Sed0011072 (gene) Chayote v1

Overview
NameSed0011072
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRNA polymerase II elongation factor ELL3 isoform 1
LocationLG08: 40135990 .. 40136820 (-)
RNA-Seq ExpressionSed0011072
SyntenySed0011072
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCAACAAATCTGAATTTCTAATGGCCGAAACCAAAGATTCAAGTGGCCACATAGTCGAAATCCCAGTAGAACAAGATAATTATCAGAATCAGAATCAAAAGCTTATGATGATCACCGTAATCCAACAGCACCCACTGAGGCAAATTTCCGAAAGCTCCGGCCATCTATTGTTGTTAAAACTCTGGCAACGAGACGAGCATCGGTTCGGCCTCCGAATCGGTTTCCAAGAGACGAAACTAGAGTCTCTAAAGCAACAAATCTTCCAACTGTGCTGCTACTTCTTCCTGTTCCACGCCCTCGCTTTAACGACATTGTTCACTTGCTCTGATCCGAATGCATGCCACAAATGGTGGGCTCCGGCAGTGTCGGTGGGGGGGACGTCGGGGGTGATGGTGGCGGCCGTGCAGGTGAAGTTGTGGGTGTATTGGAAGGCGGCAGGGGAGTTGGAGAGGGAGAAGAGTGAGAACAGAGCGCTTACAAGATGTGTTCAAGAGCTGAGAATGAAAGGGTGTTGTTTTGATTTGAGTAAAGAACCCCAAGTTGGGAACAGGATGAAGAGCTCAAGTGTGGAGATCAAATGGGGGGCCCTCACCTTCCTCTTTAGGATTCCCATTTCTCTTCTTTGCTTTTCAGGCCTTGTCTTTACTGCTTCTAACTTCATTCTTTGTGGCTTTTAGACTGACTGGTCACTGTTGTACACCACAAGACTAGTGTTGTTCAGTGTCTAATTATAACCAACACTGCTTCTGTGCCCACCTTCTTTCGTTTTTCTACCCAAAATGGATGGCCACATGTAACTTTCTGGCTTGTTACATTTATTTATACTCCA

mRNA sequence

GTCCAACAAATCTGAATTTCTAATGGCCGAAACCAAAGATTCAAGTGGCCACATAGTCGAAATCCCAGTAGAACAAGATAATTATCAGAATCAGAATCAAAAGCTTATGATGATCACCGTAATCCAACAGCACCCACTGAGGCAAATTTCCGAAAGCTCCGGCCATCTATTGTTGTTAAAACTCTGGCAACGAGACGAGCATCGGTTCGGCCTCCGAATCGGTTTCCAAGAGACGAAACTAGAGTCTCTAAAGCAACAAATCTTCCAACTGTGCTGCTACTTCTTCCTGTTCCACGCCCTCGCTTTAACGACATTGTTCACTTGCTCTGATCCGAATGCATGCCACAAATGGTGGGCTCCGGCAGTGTCGGTGGGGGGGACGTCGGGGGTGATGGTGGCGGCCGTGCAGGTGAAGTTGTGGGTGTATTGGAAGGCGGCAGGGGAGTTGGAGAGGGAGAAGAGTGAGAACAGAGCGCTTACAAGATGTGTTCAAGAGCTGAGAATGAAAGGGTGTTGTTTTGATTTGAGTAAAGAACCCCAAGTTGGGAACAGGATGAAGAGCTCAAGTGTGGAGATCAAATGGGGGGCCCTCACCTTCCTCTTTAGGATTCCCATTTCTCTTCTTTGCTTTTCAGGCCTTGTCTTTACTGCTTCTAACTTCATTCTTTGTGGCTTTTAGACTGACTGGTCACTGTTGTACACCACAAGACTAGTGTTGTTCAGTGTCTAATTATAACCAACACTGCTTCTGTGCCCACCTTCTTTCGTTTTTCTACCCAAAATGGATGGCCACATGTAACTTTCTGGCTTGTTACATTTATTTATACTCCA

Coding sequence (CDS)

ATGGCCGAAACCAAAGATTCAAGTGGCCACATAGTCGAAATCCCAGTAGAACAAGATAATTATCAGAATCAGAATCAAAAGCTTATGATGATCACCGTAATCCAACAGCACCCACTGAGGCAAATTTCCGAAAGCTCCGGCCATCTATTGTTGTTAAAACTCTGGCAACGAGACGAGCATCGGTTCGGCCTCCGAATCGGTTTCCAAGAGACGAAACTAGAGTCTCTAAAGCAACAAATCTTCCAACTGTGCTGCTACTTCTTCCTGTTCCACGCCCTCGCTTTAACGACATTGTTCACTTGCTCTGATCCGAATGCATGCCACAAATGGTGGGCTCCGGCAGTGTCGGTGGGGGGGACGTCGGGGGTGATGGTGGCGGCCGTGCAGGTGAAGTTGTGGGTGTATTGGAAGGCGGCAGGGGAGTTGGAGAGGGAGAAGAGTGAGAACAGAGCGCTTACAAGATGTGTTCAAGAGCTGAGAATGAAAGGGTGTTGTTTTGATTTGAGTAAAGAACCCCAAGTTGGGAACAGGATGAAGAGCTCAAGTGTGGAGATCAAATGGGGGGCCCTCACCTTCCTCTTTAGGATTCCCATTTCTCTTCTTTGCTTTTCAGGCCTTGTCTTTACTGCTTCTAACTTCATTCTTTGTGGCTTTTAG

Protein sequence

MAETKDSSGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFRIPISLLCFSGLVFTASNFILCGF
Homology
BLAST of Sed0011072 vs. NCBI nr
Match: XP_038905570.1 (uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 uncharacterized protein LOC120091553 [Benincasa hispida])

HSP 1 Score: 334.0 bits (855), Expect = 1.0e-87
Identity = 169/221 (76.47%), Postives = 189/221 (85.52%), Query Frame = 0

Query: 1   MAETKDSSGHIVEIPVEQDNY-QNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDE 60
           MAETKDS  HIVEIPVEQ+N+ QNQN    MI+VIQ HPLRQISESSGHLLLLKLWQRDE
Sbjct: 1   MAETKDSGAHIVEIPVEQENHTQNQNP---MISVIQHHPLRQISESSGHLLLLKLWQRDE 60

Query: 61  HRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGG 120
           H FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+T SDPN C KWW PAV++G 
Sbjct: 61  HLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGA 120

Query: 121 TSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMK 180
           TSGV V  VQ+KLW+YWKA+G+L+REK+ENRALTRCVQELRMKG CF+LSKEPQ+GNRMK
Sbjct: 121 TSGVFVIVVQLKLWLYWKASGQLQREKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMK 180

Query: 181 SSSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCGF 219
           SSSVEIKWG LT+  R  I I LL FS +VF AS FILC F
Sbjct: 181 SSSVEIKWGPLTWFSRNFITIFLLGFSAIVFAASKFILCAF 218

BLAST of Sed0011072 vs. NCBI nr
Match: XP_008449068.1 (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 325.5 bits (833), Expect = 3.6e-85
Identity = 167/221 (75.57%), Postives = 187/221 (84.62%), Query Frame = 0

Query: 1   MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDE 60
           MA+TKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDE
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENH-TQN---LMISVIQHHPLRQISESSGHLLLLKLWQRDE 60

Query: 61  HRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGG 120
           H FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+T SDP  C KWW PAV +G 
Sbjct: 61  HLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGA 120

Query: 121 TSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMK 180
           TSGV V  VQ+KLW+YWKA G+L+REKSENRALTRC QELRMKG CF+LSKEPQ+GNRMK
Sbjct: 121 TSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMK 180

Query: 181 SSSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCGF 219
           SSSVEIKWG LT+  R  I ISLL FS +VF AS FILCGF
Sbjct: 181 SSSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

BLAST of Sed0011072 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.5 bits (833), Expect = 3.6e-85
Identity = 165/219 (75.34%), Postives = 186/219 (84.93%), Query Frame = 0

Query: 3   ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEH 62
           ETKDS  + H+VEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH
Sbjct: 4   ETKDSGAAAHVVEIPAE-----NQN---VMISVIEQHPLRQISESSGHLLLLKLWQREEH 63

Query: 63  RFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGGT 122
            FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT SDPN CHKWW P V++G T
Sbjct: 64  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGAT 123

Query: 123 SGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKS 182
           SGV V  VQ+KLW+YWKA+ +L+REKSENRALTRCVQELRMKG CF+LSKEPQ+G+RMKS
Sbjct: 124 SGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKS 183

Query: 183 SSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCG 218
           SSVEIKWG LT+L R  + I LLCFSG+VF AS FILCG
Sbjct: 184 SSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

BLAST of Sed0011072 vs. NCBI nr
Match: XP_022932317.1 (uncharacterized protein LOC111438709 [Cucurbita moschata])

HSP 1 Score: 325.1 bits (832), Expect = 4.6e-85
Identity = 165/219 (75.34%), Postives = 185/219 (84.47%), Query Frame = 0

Query: 3   ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEH 62
           ETKDS  + H+VEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH
Sbjct: 4   ETKDSGAAAHVVEIPAE-----NQN---VMISVIEQHPLRQISESSGHLLLLKLWQREEH 63

Query: 63  RFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGGT 122
            FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT SDPN CHKWW P V++G T
Sbjct: 64  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGAT 123

Query: 123 SGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKS 182
           SGV V  VQ+KLW+YWKA+ +L+REKSENRALTRCVQELRMKG CF+LSKEPQ+G+RMKS
Sbjct: 124 SGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKS 183

Query: 183 SSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCG 218
           SSVEIKWG LT L R  + I LLCFSG+VF AS FILCG
Sbjct: 184 SSVEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 214

BLAST of Sed0011072 vs. NCBI nr
Match: XP_004149573.1 (uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharacterized protein LOC101219596 [Cucumis sativus] >KGN56048.1 hypothetical protein Csa_010603 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.0e-84
Identity = 165/221 (74.66%), Postives = 187/221 (84.62%), Query Frame = 0

Query: 1   MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDE 60
           MAETKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDE
Sbjct: 1   MAETKDSTAAHIVEIPVEQENH-TQN---LMISVIQHHPLRQISESSGHLLLLKLWQRDE 60

Query: 61  HRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGG 120
           H FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+T SDP  C KWW PAV +G 
Sbjct: 61  HLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGA 120

Query: 121 TSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMK 180
           TSGV V  VQ+KLW+YWKA G+L++EK+ENRALTRCVQELRMKG CF+LSKEPQ+GNRMK
Sbjct: 121 TSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMK 180

Query: 181 SSSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCGF 219
           SSSVEIKWG LT+  R  I ISLL FS ++F  S FILCGF
Sbjct: 181 SSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

BLAST of Sed0011072 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.7e-85
Identity = 167/221 (75.57%), Postives = 187/221 (84.62%), Query Frame = 0

Query: 1   MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDE 60
           MA+TKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDE
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENH-TQN---LMISVIQHHPLRQISESSGHLLLLKLWQRDE 60

Query: 61  HRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGG 120
           H FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+T SDP  C KWW PAV +G 
Sbjct: 61  HLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGA 120

Query: 121 TSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMK 180
           TSGV V  VQ+KLW+YWKA G+L+REKSENRALTRC QELRMKG CF+LSKEPQ+GNRMK
Sbjct: 121 TSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMK 180

Query: 181 SSSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCGF 219
           SSSVEIKWG LT+  R  I ISLL FS +VF AS FILCGF
Sbjct: 181 SSSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

BLAST of Sed0011072 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.2e-85
Identity = 165/219 (75.34%), Postives = 185/219 (84.47%), Query Frame = 0

Query: 3   ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEH 62
           ETKDS  + H+VEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH
Sbjct: 4   ETKDSGAAAHVVEIPAE-----NQN---VMISVIEQHPLRQISESSGHLLLLKLWQREEH 63

Query: 63  RFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGGT 122
            FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT SDPN CHKWW P V++G T
Sbjct: 64  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGAT 123

Query: 123 SGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKS 182
           SGV V  VQ+KLW+YWKA+ +L+REKSENRALTRCVQELRMKG CF+LSKEPQ+G+RMKS
Sbjct: 124 SGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKS 183

Query: 183 SSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCG 218
           SSVEIKWG LT L R  + I LLCFSG+VF AS FILCG
Sbjct: 184 SSVEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 214

BLAST of Sed0011072 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.0e-85
Identity = 165/221 (74.66%), Postives = 187/221 (84.62%), Query Frame = 0

Query: 1   MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDE 60
           MAETKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDE
Sbjct: 1   MAETKDSTAAHIVEIPVEQENH-TQN---LMISVIQHHPLRQISESSGHLLLLKLWQRDE 60

Query: 61  HRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGG 120
           H FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+T SDP  C KWW PAV +G 
Sbjct: 61  HLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGA 120

Query: 121 TSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMK 180
           TSGV V  VQ+KLW+YWKA G+L++EK+ENRALTRCVQELRMKG CF+LSKEPQ+GNRMK
Sbjct: 121 TSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMK 180

Query: 181 SSSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCGF 219
           SSSVEIKWG LT+  R  I ISLL FS ++F  S FILCGF
Sbjct: 181 SSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

BLAST of Sed0011072 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.5e-84
Identity = 165/219 (75.34%), Postives = 184/219 (84.02%), Query Frame = 0

Query: 3   ETKDSSG--HIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEH 62
           ETKDS    HIVEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH
Sbjct: 4   ETKDSGAATHIVEIPAE-----NQN---IMISVIEQHPLRQISESSGHLLLLKLWQREEH 63

Query: 63  RFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKWWAPAVSVGGT 122
            FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT SDPN CHKWW P V++G T
Sbjct: 64  LFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGAT 123

Query: 123 SGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKS 182
           SGV V  VQ+KLW+YWKA+ +L+REKSENRALTR VQELRMKG CF+LSKEPQ+G+RMKS
Sbjct: 124 SGVFVIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKS 183

Query: 183 SSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILCG 218
           SSVEIKWG LT+L R  + I LLCFSG+VF AS FILCG
Sbjct: 184 SSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

BLAST of Sed0011072 vs. ExPASy TrEMBL
Match: A0A2P6QLA8 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-62
Identity = 124/221 (56.11%), Postives = 160/221 (72.40%), Query Frame = 0

Query: 1   MAETKDSSGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEH 60
           MAE KD   H+VEIPV++++ Q  +  + +I+ IQ HPL +ISES GHLLLLKLW+R+E 
Sbjct: 1   MAEMKDCHHHVVEIPVDEEHQQKLSSSMTIISAIQHHPLMEISESPGHLLLLKLWRREED 60

Query: 61  RFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTC---SDPNACHKWWAPAVSV 120
            FG RI  +ET+++ ++++IFQLCC+F +FHA  LT LFT    S+  +C KWW P++  
Sbjct: 61  LFGRRIARRETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVNSEKGSCQKWWIPSILS 120

Query: 121 GGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNR 180
             TS V V  VQV LW YWK  G+L+REK ENRAL RC+QELRMKG  FDLSKEPQ G R
Sbjct: 121 VSTSVVFVVLVQVNLWRYWKVWGQLQREKIENRALVRCIQELRMKGASFDLSKEPQSGKR 180

Query: 181 MKSSSVEIKWGALTFLFR--IPISLLCFSGLVFTASNFILC 217
           +KSSSVEIKW  +T+  +  I I L+CF+GLVF AS  +LC
Sbjct: 181 LKSSSVEIKWKPITWCSQNLITICLVCFAGLVFPASKLMLC 221

BLAST of Sed0011072 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 223.0 bits (567), Expect = 2.3e-58
Identity = 125/238 (52.52%), Postives = 161/238 (67.65%), Query Frame = 0

Query: 1   MAETKDSSGHIVEIPVEQDNYQNQNQKLM---------MITVIQQHPLRQISESSGHLLL 60
           MA TKDS  H+VEIPV++++ + Q Q+ +         ++ VIQQHPL +ISES GHLLL
Sbjct: 1   MAGTKDS--HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLL 60

Query: 61  LKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF--TCSD------ 120
           LKLWQR+E  F  R+  +E++LES+K++IFQLCC+F +FH    T ++  +CSD      
Sbjct: 61  LKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVK 120

Query: 121 PNA-CHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMK 180
            NA C KWW P+     TS V+V  VQ KL+V+WK    + RE+++NR LTRCV ELRMK
Sbjct: 121 SNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMK 180

Query: 181 GCCFDLSKEPQVGNRMKSSSVEIKWGALTFL--FRIPISLLCFSGLVFTASNFILCGF 219
           G  FDLSKEP  G RMKSSSVEIKW  +T+   + I I LLC +GL F  S FILCGF
Sbjct: 181 GSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCGF 236

BLAST of Sed0011072 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-22
Identity = 69/192 (35.94%), Postives = 104/192 (54.17%), Query Frame = 0

Query: 36  QHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALAL 95
           +HPL QI+++  H LLLK W ++E     R+  +E++++S++++I QL  +FFLFH+++L
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 96  TTLFTCS-------DPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSE 155
             LF  S         +AC + W P++    +S  ++ AV+ K  V       LEREK +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 156 NRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEI----KWGALTFLFRIPISLLCFS 215
            + L +CV+EL+ KG  FDL KE     R KS  VE     KW A  F+     S+ C  
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESKPVKKWSARDFVTLFFFSVSC-- 196

Query: 216 GLVFTASNFILC 217
            LV      ILC
Sbjct: 197 -LVLAMIRLILC 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038905570.11.0e-8776.47uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 unchara... [more]
XP_008449068.13.6e-8575.57PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 P... [more]
KAG7015562.13.6e-8575.34hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022932317.14.6e-8575.34uncharacterized protein LOC111438709 [Cucurbita moschata][more]
XP_004149573.11.0e-8474.66uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharact... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BL811.7e-8575.57uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=... [more]
A0A6J1EWB52.2e-8575.34uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387... [more]
A0A0A0L2U75.0e-8574.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1[more]
A0A6J1HN072.5e-8475.34uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114... [more]
A0A2P6QLA82.0e-6256.11Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G56120.12.3e-5852.52unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G12870.11.6e-2235.94unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 142..162
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 23..217
NoneNo IPR availablePANTHERPTHR33287:SF3OS03G0453550 PROTEINcoord: 23..217

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011072.1Sed0011072.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane