Sed0010830 (gene) Chayote v1

Overview


Name	Sed0010830
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	LG14: 4426106 .. 4429502 (-)
RNA-Seq Expression	Sed0010830
Synteny	Sed0010830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTGCCTAATTAACAAGATTAAAAAAAAAAACAAGGTTTTCGACCGCCAGCTCAGTGGCGCTGAATCATCGATCTTCTCTTTCATCCTTCGATCTCAAGTTCTCTCATTTCCTTTTCTTCTTCTTCTTCTTCTGCGTTTTCTGTAACAATAAAACCCTAATTCGACCTCCATTGAAGCTCACAACCATGCTTCAACATCAAATCGTTCAATCCCCAGCCAGATTAGCATTAACAAACCCTAATTCCCCTTCAATTCAAAACCCTACCCCTCCAAAATTGCCCCCATCTCAACAATCCCATCACCAAAACCAACCAAATCTCTCTTCTCCGGCCCCATCCTCAACCCTTCTCCCACTCCTCCCACCTCTCCCCAGAGCTCAAGCTCTTCTCCTTCAAATGGCGTCTTTAGCTTCCAAGCTCTTCGAAGTTTCCCCCAATCGACCCCTTTGGCTCACCACATTCCGGGGTTCTCTTCCCACTTTTCTAACCTCTCAAACCCAATCCTCCCCTTCAATGCCGCTCGATTCTACGCCGGCCACGCCGAAAGAGATTCTGTCTTTGTTTAATGTTTTGCAGACCCAGTTGTTTGAAGCGGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCGAAGCAGAAGATTGCTTATGAGATAAAGGCGAAGGACGCCGCGCTTCGTGCTTTCGCTAATAAACTTAAGGATGCCGAGCAGGTACTTGATGTTTTGTTTGATGATTATGCTGATTATCAGCGTCCCAAGAGGGTTAAATCCGAGGAGGATGTCGAATGTTCGACTACGGTTGCGTCCCAGTTGAAATTGTCTGATATATTGTCGTATGCTCATAAGATTAGCTATACTACTTTTGCGCCGCCGGAATTTGGGGCGGGACAAGCTCCGTTACGTGGCGCACTTCCTCCCGCCCCGCAAGAAGAGCAATTGCGTGCTTCCCAGCTGTATAATTTCGCTGATCTTGATGTTGGGTTGCCTAAATCAGTTGAAATTACTGAGAAAACTATTGAGCCAATGATTGAGGCTCCAGCTTTGGTTCCAACTGATGCCAATTCTCTTGCTAATTTGGCTGGTATTCAAGGTTTGCTTCACCCAAATATCACTGTGCCATCTGGGTGGAAACCTGGAATGCCTGTGGAGTTGCCTAGGGATATCCCCATGCCCCCACCTGGATGGAAGCCTGGGGACCCTGTGCCGTTACCCCCATTGGACTCTCTTCCGGTTGCTAGAGTGGACGAGCCGCAATTGAGGCCGAATGTTCTTCCAGGATTACTCAGACCGTCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGATGATGATAGTAGTGATTATGCTAGCGACGATGGAAGCTCTGAAGATGATGATTGAGGAAATCGGCCTGGATTTCCAGCTAAGGCACTGGGATACGATCATACGACCCCTTAGTGACAGAAGGGGCGTGGGTGTAGAGACAATCAAAGGTTGCTGATTTGCTTAGAAGCAGTGACCCTTAATGAGTATGTAATGATCTCTTCATATGAATGCCTGAGGTTATATTTCGTACTTTCTAGGTTACATGTTACTGATGATGTGTTGTGTGCATTCATAGGGTTAACTTTGAACACAAATCTTTTCAACTTTTTAATAAGCTGTAACTTGAGTTCTTTTGCACGTTTTTGTTGATACCGAATGCATTTTAAACCTGAGTAAAGAGTGCCCTAAGACTCCTAACTTAATACCATGTCGTAGAGTCAGTGCTTTATAAGCTTCTATAGGCTGTTGAACCAATTAGTGACTATTATGATTGGAAGGCAACTGATTAGATTATTTTATGTTGGTGGCATTTAAAGATAAATCTTGAGCATAGTATAAGTTTTGATGAGATTCTGAATAATATGACCTGGTACTTGTGAAAGAGTGTGTTTCCAAATGAATATTGCTGTTGTCGAATATTTTGCTCATTTGCTGAAGAACATGTAAGGCCCTCGATAGTGCATACCTATGCAAGGAAAGGTAAGAAGATAGTGGAAGAAGAGAATGAGGTCGAAAAGGGACCACCTAACTTTCGTACCTACGAAAGGAAAAGGGGTCAGGAAGCAGAGCAGGGGATCGTGGGCAGTAATGGTCATTGGGGCCGTACCAGGGAATAAGGATTCAAATAGGGCCATCCATTGAAGGGGCCATTTTGTGCAGTTTCTAGAGAGCTTGAAGAGCAAGTCAGGAGAGACCACCACCCTCTCGAATTGGCGGGGAGCTTCTTGTTATCTTGTTCTTATTTTGGTTCTAGTATAGTTATCTACCTTTCAGTTTATTGTAAGCTAACTATCCTTATCCTGGTTATCAATATAAGTTCTCTGGTTGTTATCTTCCTTGTGCGTGTGGAGGTTGCGTGTGTTTTTGCAGGTTGGGAGCTGGATACCAAACAGAACAGTTGTACAGAAGATGAAGCTTTAGGAACTTTTTGAATAGCTATATTGCCAAGTATTTTCTGACATCCTTGGCTATTTTAGAAGAGGCTTCAGATTCTGAAGTTTTGAAGCAGCTGGAAGATGTGAACTTAAATATTTATGAGATCCATGAAATAAGTGTAAAGATGGTTGGTTGAAGAGAGAAAAAACTCAAGGACCAATAAGACCAAGAGGAATCTCTAACTTTTTCTCTTCTAAACTCTCCCAACCAAAAGTAACCCTAGCAAGAAGCCCATGCGGCTCTTCTTCCTCCGAAGTAGGGAGGATGGAGGGATACCACGGTTCTTCATCGGCTTTGCAACCGCACCACCCTTTTTCTGGGAGACCGATCTTCTCCGACTCGCACCACCCTTCATCTTTGGTGTGTTTCCCCTTTCCTGCGACTCGGGTGAACGCCGACGAAGTTTCTCCTTCAGTCAAACCAAATACAAATATATATCATACACACCCCTTTAATGCAGCAGACTTTATCAAGGTTTTCCCCTTGACGTGTCATCGATAAGACATCGATGAGGTCCCTTATTGGTGTTTCGCACTTGGTCGAGACATCACAACAACTCCTTGGTCGCAGGTCCATGTCTATTTCGGTACGATCTAGGACAAAGACACCATGAGCTCGTGTTTCGACAAAACCACTTTTCACATTGGAGAGGCACCATCAGTGCCTCAATAACTCAAATCTGACTTGCAGCGTGGTTGGGCAAAAAAACTCGAGCTGTACACACATCATCATCGACTCTTCTTTGGAAATATTGACCTACAAGTCCAGCCAGCAACCAACTTAACTGTCTTTTTGTATTTCCTATCGTTTACATGCTGGATTATATCCTTTGTTTTTTAATTTGTTGGACCATTGTTTTCGACTTTCACCATTGCTGGATTATCAATGTTTCCACAGACATTGTCCAACACTTCCAC

mRNA sequence

GTAGTGCCTAATTAACAAGATTAAAAAAAAAAACAAGGTTTTCGACCGCCAGCTCAGTGGCGCTGAATCATCGATCTTCTCTTTCATCCTTCGATCTCAAGTTCTCTCATTTCCTTTTCTTCTTCTTCTTCTTCTGCGTTTTCTGTAACAATAAAACCCTAATTCGACCTCCATTGAAGCTCACAACCATGCTTCAACATCAAATCGTTCAATCCCCAGCCAGATTAGCATTAACAAACCCTAATTCCCCTTCAATTCAAAACCCTACCCCTCCAAAATTGCCCCCATCTCAACAATCCCATCACCAAAACCAACCAAATCTCTCTTCTCCGGCCCCATCCTCAACCCTTCTCCCACTCCTCCCACCTCTCCCCAGAGCTCAAGCTCTTCTCCTTCAAATGGCGTCTTTAGCTTCCAAGCTCTTCGAAGTTTCCCCCAATCGACCCCTTTGGCTCACCACATTCCGGGGTTCTCTTCCCACTTTTCTAACCTCTCAAACCCAATCCTCCCCTTCAATGCCGCTCGATTCTACGCCGGCCACGCCGAAAGAGATTCTGTCTTTGTTTAATGTTTTGCAGACCCAGTTGTTTGAAGCGGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCGAAGCAGAAGATTGCTTATGAGATAAAGGCGAAGGACGCCGCGCTTCGTGCTTTCGCTAATAAACTTAAGGATGCCGAGCAGGTACTTGATGTTTTGTTTGATGATTATGCTGATTATCAGCGTCCCAAGAGGGTTAAATCCGAGGAGGATGTCGAATGTTCGACTACGGTTGCGTCCCAGTTGAAATTGTCTGATATATTGTCGTATGCTCATAAGATTAGCTATACTACTTTTGCGCCGCCGGAATTTGGGGCGGGACAAGCTCCGTTACGTGGCGCACTTCCTCCCGCCCCGCAAGAAGAGCAATTGCGTGCTTCCCAGCTGTATAATTTCGCTGATCTTGATGTTGGGTTGCCTAAATCAGTTGAAATTACTGAGAAAACTATTGAGCCAATGATTGAGGCTCCAGCTTTGGTTCCAACTGATGCCAATTCTCTTGCTAATTTGGCTGGTATTCAAGGTTTGCTTCACCCAAATATCACTGTGCCATCTGGGTGGAAACCTGGAATGCCTGTGGAGTTGCCTAGGGATATCCCCATGCCCCCACCTGGATGGAAGCCTGGGGACCCTGTGCCGTTACCCCCATTGGACTCTCTTCCGGTTGCTAGAGTGGACGAGCCGCAATTGAGGCCGAATGTTCTTCCAGGATTACTCAGACCGTCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGATGATGATAGTAGTGATTATGCTAGCGACGATGGAAGCTCTGAAGATGATGATTGAGGAAATCGGCCTGGATTTCCAGCTAAGGCACTGGGATACGATCATACGACCCCTTAGTGACAGAAGGGGCGTGGGTGTAGAGACAATCAAAGGTTGCTGATTTGCTTAGAAGCAGTGACCCTTAATGAGTATGTAATGATCTCTTCATATGAATGCCTGAGGTTATATTTCGTACTTTCTAGGTTACATGTTACTGATGATGTGTTGTGTGCATTCATAGGGTTAACTTTGAACACAAATCTTTTCAACTTTTTAATAAGCTGTAACTTGAGTTCTTTTGCACGTTTTTGTTGATACCGAATGCATTTTAAACCTGAGTAAAGAGTGCCCTAAGACTCCTAACTTAATACCATGTCGTAGAGTCAGTGCTTTATAAGCTTCTATAGGCTGTTGAACCAATTAGTGACTATTATGATTGGAAGGCAACTGATTAGATTATTTTATGTTGGTGGCATTTAAAGATAAATCTTGAGCATAGTATAAGTTTTGATGAGATTCTGAATAATATGACCTGGTACTTGTGAAAGAGTGTGTTTCCAAATGAATATTGCTGTTGTCGAATATTTTGCTCATTTGCTGAAGAACATGTAAGGCCCTCGATAGTGCATACCTATGCAAGGAAAGGTAAGAAGATAGTGGAAGAAGAGAATGAGGTCGAAAAGGGACCACCTAACTTTCGTACCTACGAAAGGAAAAGGGGTCAGGAAGCAGAGCAGGGGATCGTGGGCAGTAATGGTCATTGGGGCCGTACCAGGGAATAAGGATTCAAATAGGGCCATCCATTGAAGGGGCCATTTTGTGCAGTTTCTAGAGAGCTTGAAGAGCAAGTCAGGAGAGACCACCACCCTCTCGAATTGGCGGGGAGCTTCTTGTTATCTTGTTCTTATTTTGGTTCTAGTATAGTTATCTACCTTTCAGTTTATTGTAAGCTAACTATCCTTATCCTGGTTATCAATATAAGTTCTCTGGTTGTTATCTTCCTTGTGCGTGTGGAGGTTGCGTGTGTTTTTGCAGGTTGGGAGCTGGATACCAAACAGAACAGTTGTACAGAAGATGAAGCTTTAGGAACTTTTTGAATAGCTATATTGCCAAGTATTTTCTGACATCCTTGGCTATTTTAGAAGAGGCTTCAGATTCTGAAGTTTTGAAGCAGCTGGAAGATGTGAACTTAAATATTTATGAGATCCATGAAATAAGTGTAAAGATGGTTGGTTGAAGAGAGAAAAAACTCAAGGACCAATAAGACCAAGAGGAATCTCTAACTTTTTCTCTTCTAAACTCTCCCAACCAAAAGTAACCCTAGCAAGAAGCCCATGCGGCTCTTCTTCCTCCGAAGTAGGGAGGATGGAGGGATACCACGGTTCTTCATCGGCTTTGCAACCGCACCACCCTTTTTCTGGGAGACCGATCTTCTCCGACTCGCACCACCCTTCATCTTTGGTGTGTTTCCCCTTTCCTGCGACTCGGGTGAACGCCGACGAAGTTTCTCCTTCAGTCAAACCAAATACAAATATATATCATACACACCCCTTTAATGCAGCAGACTTTATCAAGGTTTTCCCCTTGACGTGTCATCGATAAGACATCGATGAGGTCCCTTATTGGTGTTTCGCACTTGGTCGAGACATCACAACAACTCCTTGGTCGCAGGTCCATGTCTATTTCGGTACGATCTAGGACAAAGACACCATGAGCTCGTGTTTCGACAAAACCACTTTTCACATTGGAGAGGCACCATCAGTGCCTCAATAACTCAAATCTGACTTGCAGCGTGGTTGGGCAAAAAAACTCGAGCTGTACACACATCATCATCGACTCTTCTTTGGAAATATTGACCTACAAGTCCAGCCAGCAACCAACTTAACTGTCTTTTTGTATTTCCTATCGTTTACATGCTGGATTATATCCTTTGTTTTTTAATTTGTTGGACCATTGTTTTCGACTTTCACCATTGCTGGATTATCAATGTTTCCACAGACATTGTCCAACACTTCCAC

Coding sequence (CDS)

ATGCTTCAACATCAAATCGTTCAATCCCCAGCCAGATTAGCATTAACAAACCCTAATTCCCCTTCAATTCAAAACCCTACCCCTCCAAAATTGCCCCCATCTCAACAATCCCATCACCAAAACCAACCAAATCTCTCTTCTCCGGCCCCATCCTCAACCCTTCTCCCACTCCTCCCACCTCTCCCCAGAGCTCAAGCTCTTCTCCTTCAAATGGCGTCTTTAGCTTCCAAGCTCTTCGAAGTTTCCCCCAATCGACCCCTTTGGCTCACCACATTCCGGGGTTCTCTTCCCACTTTTCTAACCTCTCAAACCCAATCCTCCCCTTCAATGCCGCTCGATTCTACGCCGGCCACGCCGAAAGAGATTCTGTCTTTGTTTAATGTTTTGCAGACCCAGTTGTTTGAAGCGGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCGAAGCAGAAGATTGCTTATGAGATAAAGGCGAAGGACGCCGCGCTTCGTGCTTTCGCTAATAAACTTAAGGATGCCGAGCAGGTACTTGATGTTTTGTTTGATGATTATGCTGATTATCAGCGTCCCAAGAGGGTTAAATCCGAGGAGGATGTCGAATGTTCGACTACGGTTGCGTCCCAGTTGAAATTGTCTGATATATTGTCGTATGCTCATAAGATTAGCTATACTACTTTTGCGCCGCCGGAATTTGGGGCGGGACAAGCTCCGTTACGTGGCGCACTTCCTCCCGCCCCGCAAGAAGAGCAATTGCGTGCTTCCCAGCTGTATAATTTCGCTGATCTTGATGTTGGGTTGCCTAAATCAGTTGAAATTACTGAGAAAACTATTGAGCCAATGATTGAGGCTCCAGCTTTGGTTCCAACTGATGCCAATTCTCTTGCTAATTTGGCTGGTATTCAAGGTTTGCTTCACCCAAATATCACTGTGCCATCTGGGTGGAAACCTGGAATGCCTGTGGAGTTGCCTAGGGATATCCCCATGCCCCCACCTGGATGGAAGCCTGGGGACCCTGTGCCGTTACCCCCATTGGACTCTCTTCCGGTTGCTAGAGTGGACGAGCCGCAATTGAGGCCGAATGTTCTTCCAGGATTACTCAGACCGTCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGATGATGATAGTAGTGATTATGCTAGCGACGATGGAAGCTCTGAAGATGATGATTGA

Protein sequence

MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDVECSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD

Homology

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BLAST of Sed0010830 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 691.0 bits (1782), Expect = 6.0e-195
Identity = 367/408 (89.95%), Postives = 382/408 (93.63%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQI QSPARL L NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSP PSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMA+LASKLFEVSPNR LWLT FRGSLPTFL SQTQSSPS PLD+TP+T K
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVK+++DVE    CSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA 300
           APLRGALPPAPQEEQ+RASQLYNFADLDVGLPK+VE TEKTIEPMIE PA VPTDAN LA
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           NLA IQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
            QLRPN LPGL +P EPIQVR VQLDILDQDDDSSDY SD+GSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of Sed0010830 vs. NCBI nr
Match: XP_038882754.1 (mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida])

HSP 1 Score: 688.7 bits (1776), Expect = 3.0e-194
Identity = 362/407 (88.94%), Postives = 380/407 (93.37%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL L NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSP PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEVSPNR LWLT FRGSLPTFLTSQTQSSPS  LDSTP+T K
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQ 240
           LFDDYADYQRP+RVK ++D E    CSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA 300
           APLRGALPPAPQ+EQ+RASQLYNFA+LD+GLPK+VE TEKTIEPMIE PA VPTDAN L+
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300

Query: 301 NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           N+A IQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEP
Sbjct: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360

Query: 361 QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           QLRPN  PGL +P EPIQVRHVQLDILDQDDDSSDY SD+GSSEDDD
Sbjct: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 684.9 bits (1766), Expect = 4.3e-193
Identity = 369/408 (90.44%), Postives = 380/408 (93.14%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSP PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL SQTQS+PS PLDSTP+T K
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE-----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  KRVK+ +DVE      STTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCSSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL 300
           QAPLRGALPPAPQEEQ+RASQLY+FADLDVGLPKSVE TEKTIEPMIE PA VPTDAN L
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           PQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS++GSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. NCBI nr
Match: XP_022963248.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata] >KAG7027281.1 Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 684.1 bits (1764), Expect = 7.3e-193
Identity = 370/408 (90.69%), Postives = 380/408 (93.14%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSP PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL SQTQS+PS PLDSTP+T K
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  KRVK+ +DVE    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL 300
           QAPLRGALPPAPQEEQ+RASQLY FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           PQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS++GSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. NCBI nr
Match: KAG6595269.1 (Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 682.2 bits (1759), Expect = 2.8e-192
Identity = 369/408 (90.44%), Postives = 380/408 (93.14%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL LTNPNSPSIQNPTPPKL PSQQSHHQNQ NLSSP PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLLPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL SQTQS+PS PLDSTP+T K
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  KRVK+ +DVE    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL 300
           QAPLRGALPPAPQEEQ+RASQLY FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVAR+DE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARIDE 360

Query: 361 PQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           PQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS++GSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 6.1e-134
Identity = 281/434 (64.75%), Postives = 328/434 (75.58%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARL LT P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR +WL+ FRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIK 180
           FL+S +   P    + +P++ KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EIK
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDVE--------CSTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++PKR K EED E         STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKS 300
           KL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLY FADLD+GLPK+
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMP 360
           VE  EK +E +IE P   P +A    +++ I  LL PNI VPSGWKPGMPVELPRD+P+P
Sbjct: 301 VENMEKKVEALIEPPP--PPEA---MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNVLPGLLRPSEPIQVRHVQLDILDQDDDS 404
           PPGWKPGDPV LPPL+S+   R ++ Q +RP+   GL RP + IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

[Close]

BLAST of Sed0010830 vs. ExPASy Swiss-Prot
Match: Q54D00 (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-07
Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 0


Query: 100 LTSQTQSSPSMPLD--STPATPKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIA 159
           L SQ      +P+D  S  ATP  +L L N L    ++++  + +L++   +Q    +I 
Sbjct: 44  LNSQQLQQIQLPIDQISNNATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQ 103

Query: 160 YEIKAKDAALRAFANKLKDAEQVLD------------------VLFDDYADYQRPKRVKS 219
            EI+ KD  +   A  LKD E  L+                  ++ +   D ++P    S
Sbjct: 104 KEIEEKDKLISTLALNLKDIESFLENELSQDNVNINNGNASDGIVNEVLIDLKQPDDAAS 163

Query: 220 EEDVECSTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQLRA 269
            +++     V  ++   D++SYAHKIS TT AP  FG    APL     PPAPQ+E +R+
Sbjct: 164 MDNI-----VNREVSPEDLISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMRS 223

[Close]

BLAST of Sed0010830 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 2.9e-195
Identity = 367/408 (89.95%), Postives = 382/408 (93.63%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQI QSPARL L NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSP PSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMA+LASKLFEVSPNR LWLT FRGSLPTFL SQTQSSPS PLD+TP+T K
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVK+++DVE    CSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA 300
           APLRGALPPAPQEEQ+RASQLYNFADLDVGLPK+VE TEKTIEPMIE PA VPTDAN LA
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           NLA IQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
            QLRPN LPGL +P EPIQVR VQLDILDQDDDSSDY SD+GSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of Sed0010830 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 684.1 bits (1764), Expect = 3.5e-193
Identity = 370/408 (90.69%), Postives = 380/408 (93.14%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSP PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL SQTQS+PS PLDSTP+T K
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  KRVK+ +DVE    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL 300
           QAPLRGALPPAPQEEQ+RASQLY FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           PQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS++GSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. ExPASy TrEMBL
Match: A0A6J1I9F9 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111471233 PE=3 SV=1)

HSP 1 Score: 682.2 bits (1759), Expect = 1.3e-192
Identity = 369/408 (90.44%), Postives = 380/408 (93.14%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL LTNPNSPS QNPTPPKLPPSQQSHHQ Q NLSSP PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSFQNPTPPKLPPSQQSHHQYQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL SQTQS+PS PLDSTP+T K
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  KRVK+ +DVE    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTNDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL 300
           QAPLRGALPPAPQEEQ+RASQLY+FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           PQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS++GSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.8e-190
Identity = 358/407 (87.96%), Postives = 376/407 (92.38%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS  PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEVSPNR LWLT FRGSLPTFLTSQTQSSPS  LDSTP++ K
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQ 240
           LFDDYADYQRP+RVK+E   E    CSTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA 300
           APLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPK+VE TEKTIEPMIE PA V  DAN L+
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           N+A IQGLL PNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPP+DSLPV RVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           QLRPN LPGL +P EPIQVRHVQLDILDQDDDSSDY SD+GSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.8e-190
Identity = 358/407 (87.96%), Postives = 376/407 (92.38%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPP 60
           MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS  PSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPK 120
           LPRAQALLLQMASLASKLFEVSPNR LWLT FRGSLPTFLTSQTQSSPS  LDSTP++ K
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPKRVKSEEDVE----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQ 240
           LFDDYADYQRP+RVK+E   E    CSTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA 300
           APLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPK+VE TEKTIEPMIE PA V  DAN L+
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           N+A IQGLL PNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPP+DSLPV RVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD 404
           QLRPN LPGL +P EPIQVRHVQLDILDQDDDSSDY SD+GSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Sed0010830 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 478.8 bits (1231), Expect = 4.3e-135
Identity = 281/434 (64.75%), Postives = 328/434 (75.58%), Query Frame = 0


Query: 1   MLQHQIVQSPARLALTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARL LT P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR +WL+ FRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIK 180
           FL+S +   P    + +P++ KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EIK
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDVE--------CSTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++PKR K EED E         STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKS 300
           KL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLY FADLD+GLPK+
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMP 360
           VE  EK +E +IE P   P +A    +++ I  LL PNI VPSGWKPGMPVELPRD+P+P
Sbjct: 301 VENMEKKVEALIEPPP--PPEA---MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNVLPGLLRPSEPIQVRHVQLDILDQDDDS 404
           PPGWKPGDPV LPPL+S+   R ++ Q +RP+   GL RP + IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

The following BLAST results are available for this feature:

BLAST of Sed0010830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143910.1	6.0e-195	89.95	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_038882754.1	3.0e-194	88.94	mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]	[more]
XP_023518528.1	4.3e-193	90.44	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]
XP_022963248.1	7.3e-193	90.69	mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata] >KAG7...	[more]
KAG6595269.1	2.8e-192	90.44	Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyro...	[more]

BLAST of Sed0010830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	6.1e-134	64.75	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
Q54D00	7.5e-07	29.76	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of Sed0010830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ51	2.9e-195	89.95	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A6J1HH73	3.5e-193	90.69	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]
A0A6J1I9F9	1.3e-192	90.44	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita maxima OX=366...	[more]
A0A5A7TZC1	4.8e-190	87.96	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	4.8e-190	87.96	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Sed0010830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	4.3e-135	64.75	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 129..260 e-value: 1.4E-7 score: 31.4
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 51..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 380..403

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010830.1	Sed0010830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity