Sed0010660 (gene) Chayote v1

Overview


Name	Sed0010660
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein THYLAKOID ASSEMBLY 8, chloroplastic
Location	LG07: 11152793 .. 11153828 (+)
RNA-Seq Expression	Sed0010660
Synteny	Sed0010660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGTTACTCAAAAAAGAATACCCTTAAAAAAAATTCGTCACTCATAACACAGTAAATTCGGGTAGGTTATTGGGCCGACAATTTTCCACTTATGGCCCAAGCGAATAAGTGTAGCAGCCTAGTTATAGGGCCCAATAACAAAACGCCAATGGGCCGAGCCTAAGTCCAAAGTTTGGCGAAGCAAGGGGTATAACAGTAATTGCAAAAGCACCCCACCAAAAATCCCCAATCCATTATCCCAAATCTGCACTCTGCCATGGCATCATCTCTTCGCTCCTCATTTCTCAAATCCCAAATTCCAATCCCGATTCCGATCACCGCCGTCTCCGCCACCACCGCCGTCACCATTCCGGTACGCTGCGGCCCACGCGACAACCGAGGACCACTAGTGAAAGGCAGAACCCTAAGCACGGAAGCAATCCAAGCCATCCAATCCCTGAAACGGGCCGAAAGATCCGACCCGACGAAGCTCCAGCAAGTACTCTCCAGCACTCTCTCCCGGCTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTCCTCCGGCAGGACCGTTGCGCCCTCGCCTTGGAGGTTTTCGCCGTCATCCGATCCGAGTACGACGCCGATCTCGGGCTCTACGCGGAGGTCGCGGCGGCGCTGGCCAGGAACGGGGCGGCGGAGGAGATCGACCGTCTGGTGTGCGACCTGGACGACGGTGAGAGGAAGATCGACGGCGGCGATAAGGGGTTGATTAAGCTGATGAAGGCGGTGATTGTGGGAGAGAGAAGGGAATCGACGGTCAGGATTTATCGGATGATGAGGAGGAGCGGTTGGGGGTCGGCCATGAAAACCGATGAGTATATGGTTAGGGTTTTGAGTAGGGGTTTGAAGAGGCTTGGGGAAATGGAGTTGGTGGATGAGATTAATAGGGAATTTAAAGATTTTGTTGGGAGTTATTGAAAATTTTTGTTGTATAATAAAATGACATTATGTTTCTTTCTATTTTGAATTTGTTCTAATTCTTATTTCATATATATTGTCATTTAAATGA

mRNA sequence

CTTTGTTACTCAAAAAAGAATACCCTTAAAAAAAATTCGTCACTCATAACACAGTAAATTCGGGTAGGTTATTGGGCCGACAATTTTCCACTTATGGCCCAAGCGAATAAGTGTAGCAGCCTAGTTATAGGGCCCAATAACAAAACGCCAATGGGCCGAGCCTAAGTCCAAAGTTTGGCGAAGCAAGGGGTATAACAGTAATTGCAAAAGCACCCCACCAAAAATCCCCAATCCATTATCCCAAATCTGCACTCTGCCATGGCATCATCTCTTCGCTCCTCATTTCTCAAATCCCAAATTCCAATCCCGATTCCGATCACCGCCGTCTCCGCCACCACCGCCGTCACCATTCCGGTACGCTGCGGCCCACGCGACAACCGAGGACCACTAGTGAAAGGCAGAACCCTAAGCACGGAAGCAATCCAAGCCATCCAATCCCTGAAACGGGCCGAAAGATCCGACCCGACGAAGCTCCAGCAAGTACTCTCCAGCACTCTCTCCCGGCTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTCCTCCGGCAGGACCGTTGCGCCCTCGCCTTGGAGGTTTTCGCCGTCATCCGATCCGAGTACGACGCCGATCTCGGGCTCTACGCGGAGGTCGCGGCGGCGCTGGCCAGGAACGGGGCGGCGGAGGAGATCGACCGTCTGGTGTGCGACCTGGACGACGGTGAGAGGAAGATCGACGGCGGCGATAAGGGGTTGATTAAGCTGATGAAGGCGGTGATTGTGGGAGAGAGAAGGGAATCGACGGTCAGGATTTATCGGATGATGAGGAGGAGCGGTTGGGGGTCGGCCATGAAAACCGATGAGTATATGGTTAGGGTTTTGAGTAGGGGTTTGAAGAGGCTTGGGGAAATGGAGTTGGTGGATGAGATTAATAGGGAATTTAAAGATTTTGTTGGGAGTTATTGAAAATTTTTGTTGTATAATAAAATGACATTATGTTTCTTTCTATTTTGAATTTGTTCTAATTCTTATTTCATATATATTGTCATTTAAATGA

Coding sequence (CDS)

ATGGCATCATCTCTTCGCTCCTCATTTCTCAAATCCCAAATTCCAATCCCGATTCCGATCACCGCCGTCTCCGCCACCACCGCCGTCACCATTCCGGTACGCTGCGGCCCACGCGACAACCGAGGACCACTAGTGAAAGGCAGAACCCTAAGCACGGAAGCAATCCAAGCCATCCAATCCCTGAAACGGGCCGAAAGATCCGACCCGACGAAGCTCCAGCAAGTACTCTCCAGCACTCTCTCCCGGCTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTCCTCCGGCAGGACCGTTGCGCCCTCGCCTTGGAGGTTTTCGCCGTCATCCGATCCGAGTACGACGCCGATCTCGGGCTCTACGCGGAGGTCGCGGCGGCGCTGGCCAGGAACGGGGCGGCGGAGGAGATCGACCGTCTGGTGTGCGACCTGGACGACGGTGAGAGGAAGATCGACGGCGGCGATAAGGGGTTGATTAAGCTGATGAAGGCGGTGATTGTGGGAGAGAGAAGGGAATCGACGGTCAGGATTTATCGGATGATGAGGAGGAGCGGTTGGGGGTCGGCCATGAAAACCGATGAGTATATGGTTAGGGTTTTGAGTAGGGGTTTGAAGAGGCTTGGGGAAATGGAGTTGGTGGATGAGATTAATAGGGAATTTAAAGATTTTGTTGGGAGTTATTGA

Protein sequence

MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLGLYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYRMMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY

Homology

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BLAST of Sed0010660 vs. NCBI nr
Match: XP_023522652.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548438.1 protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548440.1 protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 8.3e-93
Identity = 184/228 (80.70%), Postives = 209/228 (91.67%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SL S+FLKSQIPIPIPI+A +AT  V++PVRCGPRDNRGPLVKGRTLSTEAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA-TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAE+SDPTKL+QVLS+TLSRLLKADLVA LKELLRQDRCALALEVFAV+RSEY ADLG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYR 180
           +YAEVAAAL+RNGAAEEIDRLVCDL+D +R I   DKGLIKL+KAVI G+RRESTVRIYR
Sbjct: 121 MYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180

Query: 181 MMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY 229
           MM+RSGWGS +K D+Y VRVLS+GL+RLGEME+ DE+N +F+D VGS+
Sbjct: 181 MMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

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BLAST of Sed0010660 vs. NCBI nr
Match: XP_038898717.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 350.5 bits (898), Expect = 1.1e-92
Identity = 186/227 (81.94%), Postives = 208/227 (91.63%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MASS+ S+FLKSQI IPIP++A +A  AV++PVRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSIHSTFLKSQISIPIPVSA-AAAVAVSLPVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAERSDPTKLQQVLS+TLSRLLKADLVA+LKELLRQDRCALALEVFAVIRSEY ADLG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVASLKELLRQDRCALALEVFAVIRSEYGADLG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYR 180
           +YAEVAAAL+RNGAAEEIDRLVCDLD G+  I   DKGLIKL+KAVI G+RRESTVRIYR
Sbjct: 121 MYAEVAAALSRNGAAEEIDRLVCDLDGGDVLIQWDDKGLIKLIKAVISGDRRESTVRIYR 180

Query: 181 MMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGS 228
           MMRR+GWGS +K D+Y+VRVLS+GL+R GEMEL DEINREF+D VG+
Sbjct: 181 MMRRNGWGSTIKADDYLVRVLSKGLRRFGEMELADEINREFQDLVGN 226

[Close]

BLAST of Sed0010660 vs. NCBI nr
Match: XP_022992386.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima])

HSP 1 Score: 349.7 bits (896), Expect = 1.8e-92
Identity = 184/228 (80.70%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SL S+FLKSQIPIPIPI+A +AT  V++PVRCGPRDNRGPLVKGRTLSTEAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA-TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAE+SDPTKL+QVLS+TLSRLLKADLVA LKELLRQDRCALALEVFAV+RSEY  DLG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYR 180
           +YAEVAAAL+RNGA EEIDRLVCDL+D +R I   DKGLIKL+KAVI G+RRESTVRIYR
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180

Query: 181 MMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY 229
           MM+RSGWGS +K D+YMVRVLS+GL+RLGEME+ DEIN +F+D VGS+
Sbjct: 181 MMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF 227

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BLAST of Sed0010660 vs. NCBI nr
Match: KAG7014066.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.0 bits (894), Expect = 3.1e-92
Identity = 183/228 (80.26%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SL S+FLKSQIPIPIPI+A +AT  V++PVRCGPRDNRGPLVKGRTLSTEAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA-TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAE+SDPTKL+QVLS+TLSRLLKADLVA LKELLRQDRCALALEVFAV+RSEY ADLG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYR 180
           +YAEVAAAL+RNGA EEIDRLVCDL+D +R I   DKGLIKL+KAVI G+RRESTVRIYR
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180

Query: 181 MMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY 229
           MM+RSGWGS +K D+Y VRVLS+GL+RLGEME+ DE+N +F+D VGS+
Sbjct: 181 MMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

[Close]

BLAST of Sed0010660 vs. NCBI nr
Match: XP_022954347.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 4.1e-92
Identity = 183/228 (80.26%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SL S+FLKSQIPIPIPI+A +AT  V++PVRCGPRDNRGPLVKGRTLSTEAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA-AATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAE+SDPTKL+QVLS+TLSRLLKADLVA LKELLRQDRCALALEVFAV+RSEY ADLG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYR 180
           +YAEVAAAL+RNGA EEIDRLVCDL+D +R I   DKGLIKL+KAVI G+RRESTVRIYR
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180

Query: 181 MMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY 229
           MM+RSGWGS +K D+Y VRVLS+GL+RLGEME+ DE+N +F+D VGS+
Sbjct: 181 MMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

[Close]

BLAST of Sed0010660 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 105/208 (50.48%), Postives = 145/208 (69.71%), Query Frame = 0


Query: 19  PITAVSATTAVTIP------VRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKL 78
           P  + S T +V +P      +RCGPRDNRGPL+KGR LSTEAIQ+IQSLKRA R+  +  
Sbjct: 11  PSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVS-- 70

Query: 79  QQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEY-DADLGLYAEVAAALAR 138
             +    L RL+K+DL++ L+ELLRQD C LA+ V + +R+EY   DL LYA++  AL R
Sbjct: 71  LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVLYADIVNALTR 130

Query: 139 NGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYRMMRRSGWGS-A 198
           N   +EIDRL+ ++D  +++ D  DK L KL++AV+  ERRES VR+Y +MR SGWGS +
Sbjct: 131 NKEFDEIDRLIGEIDGIDQRSD--DKALAKLIRAVVGAERRESVVRVYTLMRESGWGSES 190

Query: 199 MKTDEYMVRVLSRGLKRLGEMELVDEIN 219
            + DEY+  VLS+GL RLGE +L  +++
Sbjct: 191 WEADEYVAEVLSKGLLRLGEPDLASQVS 214

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BLAST of Sed0010660 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 44/138 (31.88%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 50  LSTEAIQAIQSLKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFA 109
           +S E + A + LKR + +   +L + + S +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 110 VIRSE--YDADLGLYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVI 169
           V+R E  Y  D+  Y ++   LARN   +E  ++  DL   E   D    G   L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFG--DLVRGFL 120

Query: 170 VGERRESTVRIYRMMRRS 186
             E     +R+Y  MR S
Sbjct: 121 DNELPLEAMRLYGEMRES 135

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BLAST of Sed0010660 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 37/100 (37.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 41  RGPLVKGRTL-STEAIQAIQSLKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQD 100
           RGPL +G+ L   EA+  I  LKR  + D  KL + + + + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 101 RCALALEVFAVIRSE--YDADLGLYAEVAAALARNGAAEE 138
             ALA+++F VI+ +  Y  D+ +Y ++  +LA++   +E
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDE 161

[Close]

BLAST of Sed0010660 vs. ExPASy TrEMBL
Match: A0A6J1JTE8 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488709 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.9e-93
Identity = 184/228 (80.70%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SL S+FLKSQIPIPIPI+A +AT  V++PVRCGPRDNRGPLVKGRTLSTEAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA-TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAE+SDPTKL+QVLS+TLSRLLKADLVA LKELLRQDRCALALEVFAV+RSEY  DLG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYR 180
           +YAEVAAAL+RNGA EEIDRLVCDL+D +R I   DKGLIKL+KAVI G+RRESTVRIYR
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180

Query: 181 MMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY 229
           MM+RSGWGS +K D+YMVRVLS+GL+RLGEME+ DEIN +F+D VGS+
Sbjct: 181 MMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF 227

[Close]

BLAST of Sed0010660 vs. ExPASy TrEMBL
Match: A0A6J1GQS0 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456620 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92
Identity = 183/228 (80.26%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MA SL S+FLKSQIPIPIPI+A +AT  V++PVRCGPRDNRGPLVKGRTLSTEAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA-AATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAE+SDPTKL+QVLS+TLSRLLKADLVA LKELLRQDRCALALEVFAV+RSEY ADLG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYR 180
           +YAEVAAAL+RNGA EEIDRLVCDL+D +R I   DKGLIKL+KAVI G+RRESTVRIYR
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIYR 180

Query: 181 MMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY 229
           MM+RSGWGS +K D+Y VRVLS+GL+RLGEME+ DE+N +F+D VGS+
Sbjct: 181 MMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

[Close]

BLAST of Sed0010660 vs. ExPASy TrEMBL
Match: A0A5A7V0E2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002110 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.4e-90
Identity = 183/229 (79.91%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MASSLRS+FLKSQI IPIP +  +A  AV+  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAERSDPTKLQQVLS+TLSRLLKADLVA LKELLRQ+RCALALEVFAVIRSEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGG--DKGLIKLMKAVIVGERRESTVRI 180
           LYAEVAAAL+RNGAAEEIDRLVCDLD  +  I+ G  DKGLIKL+KAVI G RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGS 228
           YRMMRR+GWGS +K D+YM++V+S+GL+R+GE+EL DEINREF+D VGS
Sbjct: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 229

[Close]

BLAST of Sed0010660 vs. ExPASy TrEMBL
Match: A0A0A0K6N6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.7e-89
Identity = 182/230 (79.13%), Postives = 204/230 (88.70%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MASSL S+FLKSQI IPIP +  ++  AV+  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAERSDPTKLQQVLS+TLSRLLKADLVA LKELLRQ+RCALALEVFAVI+SEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGG--DKGLIKLMKAVIVGERRESTVRI 180
           LYAEVAAAL+RNGAAEEIDRLV DLD G+  I+ G  DKGLIKL+KAVI G RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGSY 229
           YRMMRR GWGS +K D+YM++VLS+GL+RLGE+EL DEINREF+D VGS+
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

[Close]

BLAST of Sed0010660 vs. ExPASy TrEMBL
Match: A0A1S3CGD3 (uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.7e-89
Identity = 182/229 (79.48%), Postives = 204/229 (89.08%), Query Frame = 0


Query: 1   MASSLRSSFLKSQIPIPIPITAVSATTAVTIPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60
           MASSL S+FLKSQI IPIP +  +A  AV+  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 28  MASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 87

Query: 61  LKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEYDADLG 120
           LKRAERSDPTKLQQVLS+TLSRLLKADLVA LKELLRQ+RCALALEVFAVIRSEY A+LG
Sbjct: 88  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 147

Query: 121 LYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGG--DKGLIKLMKAVIVGERRESTVRI 180
           LYAEVAAAL+RNGAAEEIDRLVCDLD  +  I+ G  DKGLIKL+KAVI G RRESTVRI
Sbjct: 148 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 207

Query: 181 YRMMRRSGWGSAMKTDEYMVRVLSRGLKRLGEMELVDEINREFKDFVGS 228
           YRMMRR+GWGS +K D+YM++V+S+GL+R+GE+EL DEINREF+D VGS
Sbjct: 208 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELADEINREFQDLVGS 256

[Close]

BLAST of Sed0010660 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-45
Identity = 105/208 (50.48%), Postives = 145/208 (69.71%), Query Frame = 0


Query: 19  PITAVSATTAVTIP------VRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKL 78
           P  + S T +V +P      +RCGPRDNRGPL+KGR LSTEAIQ+IQSLKRA R+  +  
Sbjct: 11  PSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVS-- 70

Query: 79  QQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFAVIRSEY-DADLGLYAEVAAALAR 138
             +    L RL+K+DL++ L+ELLRQD C LA+ V + +R+EY   DL LYA++  AL R
Sbjct: 71  LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVLYADIVNALTR 130

Query: 139 NGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYRMMRRSGWGS-A 198
           N   +EIDRL+ ++D  +++ D  DK L KL++AV+  ERRES VR+Y +MR SGWGS +
Sbjct: 131 NKEFDEIDRLIGEIDGIDQRSD--DKALAKLIRAVVGAERRESVVRVYTLMRESGWGSES 190

Query: 199 MKTDEYMVRVLSRGLKRLGEMELVDEIN 219
            + DEY+  VLS+GL RLGE +L  +++
Sbjct: 191 WEADEYVAEVLSKGLLRLGEPDLASQVS 214

[Close]

BLAST of Sed0010660 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-16
Identity = 67/203 (33.00%), Postives = 103/203 (50.74%), Query Frame = 0


Query: 40  NRGPLVKGRTLSTEAIQAIQSLKRAE--------------RSDPTKLQQVLSSTLSRLLK 99
           NR PL +GR LS EAIQA+Q+LKRA                S    L +V+ S   RLLK
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 100 ADLVAALKELLRQDRCALALEVFAVIRSE--YDADLGLYAEVAAALARNGAAEEIDRLVC 159
            D+VA L+ELLRQ+ C+LAL+VF  IR E  Y   + +Y ++   +A N   EE++ L  
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 614

Query: 160 DLDDGERKIDGGDKGLIKLMKAVIVGERRESTVRIYRMMRRSGWGSAMKTDEYMVRVLSR 219
            +   E+ +    +    L+  ++  +  +  +  Y  M+  G+    + D    RVL  
Sbjct: 615 AM-KSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGY----EPDRASFRVLVL 674

Query: 220 GLKRLGEMELVDEINREFKDFVG 227
           GL+  GEM L   + ++  ++ G
Sbjct: 675 GLESNGEMGLSAIVRQDAHEYYG 692

[Close]

BLAST of Sed0010660 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07
Identity = 44/138 (31.88%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 50  LSTEAIQAIQSLKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQDRCALALEVFA 109
           +S E + A + LKR + +   +L + + S +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 110 VIRSE--YDADLGLYAEVAAALARNGAAEEIDRLVCDLDDGERKIDGGDKGLIKLMKAVI 169
           V+R E  Y  D+  Y ++   LARN   +E  ++  DL   E   D    G   L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFG--DLVRGFL 120

Query: 170 VGERRESTVRIYRMMRRS 186
             E     +R+Y  MR S
Sbjct: 121 DNELPLEAMRLYGEMRES 135

[Close]

BLAST of Sed0010660 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07
Identity = 37/100 (37.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 41  RGPLVKGRTL-STEAIQAIQSLKRAERSDPTKLQQVLSSTLSRLLKADLVAALKELLRQD 100
           RGPL +G+ L   EA+  I  LKR  + D  KL + + + + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 101 RCALALEVFAVIRSE--YDADLGLYAEVAAALARNGAAEE 138
             ALA+++F VI+ +  Y  D+ +Y ++  +LA++   +E
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDE 161

The following BLAST results are available for this feature:

BLAST of Sed0010660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522652.1	8.3e-93	80.70	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >X...	[more]
XP_038898717.1	1.1e-92	81.94	protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida]	[more]
XP_022992386.1	1.8e-92	80.70	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima]	[more]
KAG7014066.1	3.1e-92	80.26	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022954347.1	4.1e-92	80.26	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata]	[more]

BLAST of Sed0010660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW6	1.5e-44	50.48	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q1PFH7	1.6e-06	31.88	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9STF9	1.6e-06	37.00	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Sed0010660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTE8	8.9e-93	80.70	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GQS0	2.0e-92	80.26	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7V0E2	5.4e-90	79.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K6N6	2.7e-89	79.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1	[more]
A0A1S3CGD3	2.7e-89	79.48	uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=...	[more]

BLAST of Sed0010660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27750.1	1.1e-45	50.48	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G09320.1	2.3e-16	33.00	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT1G62350.1	1.1e-07	31.88	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G46870.1	1.1e-07	37.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 49..225 e-value: 3.9E-29 score: 103.5
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 18..225
None	No IPR available	PANTHER	PTHR47594:SF3	PROTEIN THYLAKOID ASSEMBLY 8, CHLOROPLASTIC	coord: 18..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010660.1	Sed0010660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding