Sed0010267 (gene) Chayote v1

Overview
NameSed0010267
Typegene
OrganismSechium edule (Chayote v1)
Descriptionnuclear transport factor 2
LocationLG12: 3664718 .. 3667875 (+)
RNA-Seq ExpressionSed0010267
SyntenySed0010267
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCGACTTTCGTCTCCATTCTTCTCTCTGCAAAACTTGGCGTCGTTCTCAAGCAGGGCGGAGGGAAGCAAGTCTCTGTAAGCTCTTACCGGCGGCGAACTCGAACGTTACCGGAATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCACTACTACTCCACCTTCGACGCCAATCGAGCCGGCCTTGCTAATCTCTACCAGGATACTTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCGCGCAGAATATTGTCGCTAAGCTCACCAGCCTTCCCTTCCAGCAGTGTCAGCACTCCGTTAGCACCATCGATTCGCAGCCTTCCGGCCCCAATGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCCGGTGAACAACATGCTCTCAAATTCAGTCAGGTATTCTGTTTTCTTATTCCGATTTGTTTCGGTTTGTGAGCCTTGTGGTTGTTGATGTTATCGATCTTGGTTGGATCTAGTGTTGTCATGTAGTTAACTGATCGATCGTTCTGAGTTGGATTGTATTGATTGAATTGGTGTTGCGATTCTCTAATTTATGCGTTTGTGCGCTTGGAATATCATCAGGTTTAGGGTAATTTGAGTCGGATTTGTTCATGTAGATCTAGGAATTTTCGTCCGGATTTTCTGTATTATATTTCGACTTCGACACTGTAGATCGAAGTTGGGATCGTGAGATTATTGTTTGTGGTTTTTGGCGGTTTCGGTATATCTGCTATGATTCATGTTTTACTATGTTGGTTTTTGTTTTTGTGAAGAAATACTACGAGAAAACGTTCATTTTACCATGCGTATGATTCTCCAGCATGGGCCTAGTTAGGAAAACAACTAAATATCCACTTGATTATTTAACTCCGAAAATTTAGTGTTAATCTGCTTTATATGTTGCTGTTTTTGTTAGTGAGAGTTTGTGAAGCGACTAAAAGTTAGTGCTAATCTGTTTTTGTTTGATTACTTGATTACATACTCTGAAAAGTTAGTGCTAACCTGCTTTATACCTTTCCGTTTTTGTTCGTGAGAGTTTGTGAAGTGACTAAAAGTGAGTGTTCATCTGTTTTTGTTTGATTATTTGATTACTAAACCCTGAAAAGTTAGTGCTAATCTGCTTTATACCTTGCCGTTTTTGTTTGTGAGAGTTTGTTAAGCGACTAAAAGTTAGTGTTATTCTGTTTTTGTTTGATTCCTTGATTACTTAACTCTGAAAAGTTAGTGATAATCTGCTTTATACATTGCTGTTTTTGTTTGTGAGAGTTTGTGAAGCGACTAAAAATGTTCCTCTGTTGTTTTGTTTTAATAAAAACGTTGCCTCGTTCCCCACGTATCTTTCTTCCTATTGTATATGCATGTTATTACATCCTTGGCATATTATGATGCATCTTTGAAATGAAGTTATTATGACGTATTGAGTATGTAACCACGGTCTATATTCTCATGGAGGGTACTTTTAGATATAAATTTGTCTGGCATTGCATGAAACTCTTTTTTATGTTCTTCGTTTACTTATTCTAATTCAATGTATTTTTAAATGCCCAATGGAATGTAACCTATTTAAGAATAATGTTCATGACTGTATAGTTAAAACGACTCATGTTATGCTGGTATGTATGCTGTGTTATATTTCATATTTGTGAACCTGTGTTTTGTGTAATATAAATAATACATGTGTATATTTTAGAATTTGAGAATGCGGTGCATAGAATTTTCTTGTTTGTATTATATTATGAAACAAATTCAATTATGCTAAGAGCTTCTTGATAGAATTTAGAATTTGTTTGTACACTTGCAACTTGAAAATTTTCAAGTTTAGCCATAAACTCCTCCTGAATTTTTAATCAGTGAACTTCCTTGTTTTTTATCTGTGAATCTATGTTTTTGTAGAATTTTGATTTGTATACTTGAATAGTACTTCAGTTTCTTGGACAACCTTTCTTAGCTACTAGGGTTGAAGTTGCTTGCTATGCTGTACAACTGTGTATTTAGTTCTTTAGTTCTTAAGTACTTGACGTTGCTTAGGCCCCGTTTGATAACCATTTTGTTTTTCGTTTTTTGTTTATGAAATTTAAGCCTAAAAAAACTATCTTACTATACCTTTTTCCTTATTTGGATATCTACATCTTACCTATATTTTAATAAACAAAATCAAAATTTGGAAACAAAAAAAGTAGTTTTCAAAAGCTTGTTTTTGTTTTTGAAATTTGGTTAGTATTCACTTACTTTCTTAAGAAAATATGGATATATTGTGTGGGAAAGATGGAGCACATGGTAGGAAATTTGAGGAAATTTGAGTAGAAATAAGCTTAAATTTCATAAACAAAAAAAAAAACTAAATGGTTATCAAACGGGGTCTAAGTTTCAAACATCTTTCGTTAATTGTTTCTAACCCAAATATGTTGACTATATGTGGTTTGCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCGTGAAGTTGAGGTTTATCCATCATGGTATTGGAAGGCCTGAAATGTCAGGTTTATTCATCCAGTTTGTTTTGCCACCGTTCAGTTTTTTAGACATTTCTATTTGGAACTTGGATCATATTTTATCGTGCCTATGCTTCAATGTGTGCCTTTGCGAATTTGAATTTCTTGATTGTCATTGAAAATTGATGAAATAGAACGCTTTCTTCGAATTCAAGTGATTTGCTCAATACTAAAATTTTAAGCTATGCAATAGAGGCTTTCTTCAATAGTGGTGCGCCTATTTAAATTGCTAGTGTATTGTTATATGTACGAAAATCAATACTTTAAGCTGATTTATGACATGAAGTTTGATATAACTTCTTCTGCTCGGGGCAGTGGTTGAAGGCTTTGACTTTGAGGACATGTTCCTCTTAAGGTCTTGAGTTCGAGACTCACTTGTAACATTACTCTTTCGATGTGTTCGGTGCTGGCCTAAGGATGGATGTGATTGCCCTCCTTTAAAAAAAAAAAAAGGAGTTAATGTAACTTTTTTGGCATGAAAATTGTTGTATCTATCCAGGATTCTTCAAATAGCAAGAATTAAGGACATCTGGATTGTTCTAGCTTTATTATGTGTAATAAAAATTACAGGGTTTCAATTTCAC

mRNA sequence

CCTCGACTTTCGTCTCCATTCTTCTCTCTGCAAAACTTGGCGTCGTTCTCAAGCAGGGCGGAGGGAAGCAAGTCTCTGTAAGCTCTTACCGGCGGCGAACTCGAACGTTACCGGAATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCACTACTACTCCACCTTCGACGCCAATCGAGCCGGCCTTGCTAATCTCTACCAGGATACTTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCGCGCAGAATATTGTCGCTAAGCTCACCAGCCTTCCCTTCCAGCAGTGTCAGCACTCCGTTAGCACCATCGATTCGCAGCCTTCCGGCCCCAATGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCCGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCGTGAAGTTGAGGTTTATCCATCATGGTATTGGAAGGCCTGAAATGTCAGGTTTATTCATCCAGTTTGTTTTGCCACCGTTCAGTTTTTTAGACATTTCTATTTGGAACTTGGATCATATTTTATCGTGCCTATGCTTCAATGTGTGCCTTTGCGAATTTGAATTTCTTGATTGTCATTGAAAATTGATGAAATAGAACGCTTTCTTCGAATTCAAGTGATTTGCTCAATACTAAAATTTTAAGCTATGCAATAGAGGCTTTCTTCAATAGTGGTGCGCCTATTTAAATTGCTAGTGTATTGTTATATGTACGAAAATCAATACTTTAAGCTGATTTATGACATGAAGTTTGATATAACTTCTTCTGCTCGGGGCAGTGGTTGAAGGCTTTGACTTTGAGGACATGTTCCTCTTAAGGTCTTGAGTTCGAGACTCACTTGTAACATTACTCTTTCGATGTGTTCGGTGCTGGCCTAAGGATGGATGTGATTGCCCTCCTTTAAAAAAAAAAAAAGGAGTTAATGTAACTTTTTTGGCATGAAAATTGTTGTATCTATCCAGGATTCTTCAAATAGCAAGAATTAAGGACATCTGGATTGTTCTAGCTTTATTATGTGTAATAAAAATTACAGGGTTTCAATTTCAC

Coding sequence (CDS)

ATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCACTACTACTCCACCTTCGACGCCAATCGAGCCGGCCTTGCTAATCTCTACCAGGATACTTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCGCGCAGAATATTGTCGCTAAGCTCACCAGCCTTCCCTTCCAGCAGTGTCAGCACTCCGTTAGCACCATCGATTCGCAGCCTTCCGGCCCCAATGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCCGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCGTGA

Protein sequence

MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA
Homology
[Close]
BLAST of Sed0010267 vs. NCBI nr
Match: XP_023526029.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 118/123 (95.93%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQG+ NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]
BLAST of Sed0010267 vs. NCBI nr
Match: XP_022956152.1 (nuclear transport factor 2B [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-60
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQG+ NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHL+PTPQGSFYVLNDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGSFYVLNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]
BLAST of Sed0010267 vs. NCBI nr
Match: XP_022979987.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 241.5 bits (615), Expect = 3.8e-60
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQG+ NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]
BLAST of Sed0010267 vs. NCBI nr
Match: XP_022932693.1 (nuclear transport factor 2B-like [Cucurbita moschata] >KAG7029101.1 Nuclear transport factor 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.5 bits (615), Expect = 3.8e-60
Identity = 116/123 (94.31%), Postives = 121/123 (98.37%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANR+GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122

Query: 121 NYA 124
           NYA
Sbjct: 123 NYA 125

[Close]
BLAST of Sed0010267 vs. NCBI nr
Match: XP_022972136.1 (nuclear transport factor 2B-like [Cucurbita maxima] >XP_023539086.1 nuclear transport factor 2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.1 bits (614), Expect = 5.0e-60
Identity = 116/123 (94.31%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANR GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRGGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122

Query: 121 NYA 124
           NYA
Sbjct: 123 NYA 125

[Close]
BLAST of Sed0010267 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.1e-57
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           +H +ST+D QPSGP  GMLVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 121 NYA 124
           NYA
Sbjct: 124 NYA 126

[Close]
BLAST of Sed0010267 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-53
Identity = 101/123 (82.11%), Postives = 114/123 (92.68%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQG+QNIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           +H+++T+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHL+ + QG++YV NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 122

[Close]
BLAST of Sed0010267 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.2e-41
Identity = 81/122 (66.39%), Postives = 94/122 (77.05%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  GA  I  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
            H ++T+D QPSGP GGMLVFVSG+L+   ++H LKFSQMF L+P   G+FYV ND+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 120

Query: 121 NY 123
           NY
Sbjct: 121 NY 121

[Close]
BLAST of Sed0010267 vs. ExPASy Swiss-Prot
Match: Q75AA5 (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-33
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MD  A+A+ F + YY+ FD +R+ L NLY+D SMLTFE  ++QGA++IV KL SLPFQ+ 
Sbjct: 3   MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKV 62

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QH ++T+D+QP+ PNG +LV ++G+L +  EQ+A +FSQ+FHLMP    S+YV NDIFRL
Sbjct: 63  QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIFRL 122

Query: 121 NYA 124
           NY+
Sbjct: 123 NYS 124

[Close]
BLAST of Sed0010267 vs. ExPASy Swiss-Prot
Match: Q96VN3 (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ntf2 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.0e-33
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 0 

Query: 2   DPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQ 61
           D  ++A+ FV  YY TFD NRAGLA LY+D SMLTFE   IQG   I+ KLTSLPFQ+ Q
Sbjct: 3   DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQ 62

Query: 62  HSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 121
           H VST+D+QPSG +GG+LV V+G L +  E++ + ++Q F LMP   GS++VLND+FRL 
Sbjct: 63  HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122

Query: 122 Y 123
           Y
Sbjct: 123 Y 123

[Close]
BLAST of Sed0010267 vs. ExPASy TrEMBL
Match: A0A6J1GVJ2 (nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111457934 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQG+ NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHL+PTPQGSFYVLNDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGSFYVLNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]
BLAST of Sed0010267 vs. ExPASy TrEMBL
Match: A0A6J1IQ79 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.8e-60
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQG+ NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]
BLAST of Sed0010267 vs. ExPASy TrEMBL
Match: A0A6J1F2G7 (nuclear transport factor 2B-like OS=Cucurbita moschata OX=3662 GN=LOC111439162 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.8e-60
Identity = 116/123 (94.31%), Postives = 121/123 (98.37%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANR+GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122

Query: 121 NYA 124
           NYA
Sbjct: 123 NYA 125

[Close]
BLAST of Sed0010267 vs. ExPASy TrEMBL
Match: A0A6J1I548 (nuclear transport factor 2B-like OS=Cucurbita maxima OX=3661 GN=LOC111470768 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 116/123 (94.31%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANR GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRGGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122

Query: 121 NYA 124
           NYA
Sbjct: 123 NYA 125

[Close]
BLAST of Sed0010267 vs. ExPASy TrEMBL
Match: A0A4S4E6M5 (NTF2 domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_005919 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 114/123 (92.68%), Postives = 121/123 (98.37%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANRAGLANLYQ++SMLTFEGQKIQG+QNIVAKLTSLPFQQC
Sbjct: 98  MDPDAVAKAFVEHYYSTFDANRAGLANLYQESSMLTFEGQKIQGSQNIVAKLTSLPFQQC 157

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           QHS++T+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL
Sbjct: 158 QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 217

Query: 121 NYA 124
           NYA
Sbjct: 218 NYA 220

[Close]
BLAST of Sed0010267 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-58
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           +H +ST+D QPSGP  GMLVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 121 NYA 124
           NYA
Sbjct: 124 NYA 126

[Close]
BLAST of Sed0010267 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-55
Identity = 100/118 (84.75%), Postives = 108/118 (91.53%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIF 119
           +H +ST+D QPSGP  GMLVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIF
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]
BLAST of Sed0010267 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 210.3 bits (534), Expect = 8.8e-55
Identity = 101/123 (82.11%), Postives = 114/123 (92.68%), Query Frame = 0 

Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQG+QNIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  QHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
           +H+++T+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQMFHL+ + QG++YV NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 122

[Close]
BLAST of Sed0010267 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-37
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 0 

Query: 4   DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHS 63
           + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTIDSQPS---GPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 123
           +ST+DSQPS   G  GG+LVFVSG++QL GE H L+FSQ FHL+P  QGSF+V N++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

[Close]
BLAST of Sed0010267 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 0 

Query: 4   DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHS 63
           + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTIDSQPS---GPNGGMLVFVSGNLQLAGEQHALKFSQMFHL 104
           +ST+DSQPS   G  GG+LVFVSG++QL GE H L+FSQ++ L
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112

The following BLAST results are available for this feature:
BLAST of Sed0010267 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023526029.11.0e-6095.93nuclear transport factor 2B [Cucurbita pepo subsp. pepo][more]
XP_022956152.12.9e-6095.12nuclear transport factor 2B [Cucurbita moschata][more]
XP_022979987.13.8e-6095.12nuclear transport factor 2B [Cucurbita maxima][more]
XP_022932693.13.8e-6094.31nuclear transport factor 2B-like [Cucurbita moschata] >KAG7029101.1 Nuclear tran... [more]
XP_022972136.15.0e-6094.31nuclear transport factor 2B-like [Cucurbita maxima] >XP_023539086.1 nuclear tran... [more]
BLAST of Sed0010267 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C7F53.1e-5785.37Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1[more]
Q9FZK41.2e-5382.11Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1[more]
Q9XJ549.2e-4166.39Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2... [more]
Q75AA51.4e-3355.28Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / ... [more]
Q96VN37.0e-3357.02Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /... [more]
BLAST of Sed0010267 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GVJ21.4e-6095.12nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111457934 PE=4 S... [more]
A0A6J1IQ791.8e-6095.12nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=... [more]
A0A6J1F2G71.8e-6094.31nuclear transport factor 2B-like OS=Cucurbita moschata OX=3662 GN=LOC111439162 P... [more]
A0A6J1I5482.4e-6094.31nuclear transport factor 2B-like OS=Cucurbita maxima OX=3661 GN=LOC111470768 PE=... [more]
A0A4S4E6M51.2e-5992.68NTF2 domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=T... [more]
BLAST of Sed0010267 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27970.12.2e-5885.37nuclear transport factor 2B [more]
AT1G27970.22.3e-5584.75nuclear transport factor 2B [more]
AT1G27310.18.8e-5582.11nuclear transport factor 2A [more]
AT1G11570.24.8e-3760.66NTF2-like [more]
AT1G11570.11.2e-2758.25NTF2-like [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002075Nuclear transport factor 2PFAMPF02136NTF2coord: 6..120
e-value: 3.3E-38
score: 130.9
NoneNo IPR availableGENE3D3.10.450.50coord: 1..123
e-value: 6.3E-45
score: 154.3
NoneNo IPR availablePANTHERPTHR12612NUCLEAR TRANSPORT FACTOR 2coord: 1..123
NoneNo IPR availablePANTHERPTHR12612:SF36NUCLEAR TRANSPORT FACTOR 2Bcoord: 1..123
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 6..120
score: 34.706196
IPR018222Nuclear transport factor 2, eukaryoteCDDcd00780NTF2coord: 2..122
e-value: 1.7282E-48
score: 149.355
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 3..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010267.1Sed0010267.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006913 nucleocytoplasmic transport
cellular_component GO:0044613 nuclear pore central transport channel