Sed0010166 (gene) Chayote v1

Overview
NameSed0010166
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
LocationLG02: 48357749 .. 48359020 (+)
RNA-Seq ExpressionSed0010166
SyntenySed0010166
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAATTTTAGGTGAAAATCAACACAAACACAAAAAAAACGTTCAATTCTGAAAGAGTTCAAAATTCGAACCAAAATTCTTGAAGCCAAAGAGCCAAATCGAGACTTCTTCTTCTTCATCATCCCAACTCTCTCTTTTCAAGTTTCCAGCTCCGATTCCGGGGAACTATTCCGGCGAACTAGGGTTTCTATTCCGGTGACCTAGGGTTTCTGTTCCGGCGAATGCTGTTGCTCCTTCTACTCCGATGAATCGGCCGCACATCAACAATCCTCAATCGAATTCCATTTCTCAGTGCCGTGAATGCGGCATCTCTCAATCCGAGTGCTGGATTCTCCACAATGTTCGTCTCAAAGCGTCTCTCCGTCGTCTCTGCACCAATTGCGTCCTCAAGAACAACCTCTCCCGATTCTGTCCCGTTTGCTTCGATATCTACGACGACACGACGGCGCCGCCGTCCCACCAGCGAGTTATGTGTTTCCGATGTCCTTCGATCTCTCATCTCTCTTGTATTTCTTTTCGGTTTTCTTCTACCTTCCTGTGCCCTAGCTGCTCCGATCCTCGTTTTGCCTTCTTACACGGTTCTGAATCTGGCGGCGTTTCTCAATCGGAGTCCGTTGAGCCTGGTTTGGCCGGCGTTGATGGTGAATCGGCTAAGGCGATTGTCACTGCGGCTCGTATCGCTGCTCAATCTCTGCGGAGAGCGGCGGCTGGCGCTAGGGCTGTGGCGGAGATGAAGATTAAGAATGCTGCGTTTGCTAAGAAGCAGGCTGCTCTCGCTTTGGAGCGGCTTGCTTATCTTGTGCTACAGGAGAAAGATGGCACTGGATTTGTTAATAGCAATGGAGATGCTATTGCTGGTGAACCCTAGCTGCAGGACAAGGGAGGTAACAACTTCGATTCTGTAGCCGTAGATGTAGATTAAGCAATTGAGAGTAGGATTTTGAAACTGTCTTGTTCAATCGAATGCAGAGCGTAGAGGTACGATTAACCATCCATGGAAACTTCTGGATCCATGTTTGTGATGATTTCTCTGTGTTCATGGATGCTAGGAAAGATCAGTAGAGGGAAGTGTGTAAGGATTTTCATGTATGTTTCAACATTGTTTGTTTGTTCCTTTGGGGGATTTTCTTCATATTGTAATGCTATTGAGTATGAGGCAACTCTTTTTCTGCTTCTCTATTGATTCCAATTCTTTATTTTGCCATTTTTGTTTCTGTTTTGACTTTCTGGAGTTATTCTTCTTCATCCTGCTCTCATCTTTTGATAATTTTA

mRNA sequence

TTTAATTTTAGGTGAAAATCAACACAAACACAAAAAAAACGTTCAATTCTGAAAGAGTTCAAAATTCGAACCAAAATTCTTGAAGCCAAAGAGCCAAATCGAGACTTCTTCTTCTTCATCATCCCAACTCTCTCTTTTCAAGTTTCCAGCTCCGATTCCGGGGAACTATTCCGGCGAACTAGGGTTTCTATTCCGGTGACCTAGGGTTTCTGTTCCGGCGAATGCTGTTGCTCCTTCTACTCCGATGAATCGGCCGCACATCAACAATCCTCAATCGAATTCCATTTCTCAGTGCCGTGAATGCGGCATCTCTCAATCCGAGTGCTGGATTCTCCACAATGTTCGTCTCAAAGCGTCTCTCCGTCGTCTCTGCACCAATTGCGTCCTCAAGAACAACCTCTCCCGATTCTGTCCCGTTTGCTTCGATATCTACGACGACACGACGGCGCCGCCGTCCCACCAGCGAGTTATGTGTTTCCGATGTCCTTCGATCTCTCATCTCTCTTGTATTTCTTTTCGGTTTTCTTCTACCTTCCTGTGCCCTAGCTGCTCCGATCCTCGTTTTGCCTTCTTACACGGTTCTGAATCTGGCGGCGTTTCTCAATCGGAGTCCGTTGAGCCTGGTTTGGCCGGCGTTGATGGTGAATCGGCTAAGGCGATTGTCACTGCGGCTCGTATCGCTGCTCAATCTCTGCGGAGAGCGGCGGCTGGCGCTAGGGCTGTGGCGGAGATGAAGATTAAGAATGCTGCGTTTGCTAAGAAGCAGGCTGCTCTCGCTTTGGAGCGGCTTGCTTATCTTGTGCTACAGGAGAAAGATGGCACTGGATTTGTTAATAGCAATGGAGATGCTATTGCTGGTGAACCCTAGCTGCAGGACAAGGGAGGTAACAACTTCGATTCTGTAGCCGTAGATGTAGATTAAGCAATTGAGAGTAGGATTTTGAAACTGTCTTGTTCAATCGAATGCAGAGCGTAGAGGTACGATTAACCATCCATGGAAACTTCTGGATCCATGTTTGTGATGATTTCTCTGTGTTCATGGATGCTAGGAAAGATCAGTAGAGGGAAGTGTGTAAGGATTTTCATGTATGTTTCAACATTGTTTGTTTGTTCCTTTGGGGGATTTTCTTCATATTGTAATGCTATTGAGTATGAGGCAACTCTTTTTCTGCTTCTCTATTGATTCCAATTCTTTATTTTGCCATTTTTGTTTCTGTTTTGACTTTCTGGAGTTATTCTTCTTCATCCTGCTCTCATCTTTTGATAATTTTA

Coding sequence (CDS)

ATGAATCGGCCGCACATCAACAATCCTCAATCGAATTCCATTTCTCAGTGCCGTGAATGCGGCATCTCTCAATCCGAGTGCTGGATTCTCCACAATGTTCGTCTCAAAGCGTCTCTCCGTCGTCTCTGCACCAATTGCGTCCTCAAGAACAACCTCTCCCGATTCTGTCCCGTTTGCTTCGATATCTACGACGACACGACGGCGCCGCCGTCCCACCAGCGAGTTATGTGTTTCCGATGTCCTTCGATCTCTCATCTCTCTTGTATTTCTTTTCGGTTTTCTTCTACCTTCCTGTGCCCTAGCTGCTCCGATCCTCGTTTTGCCTTCTTACACGGTTCTGAATCTGGCGGCGTTTCTCAATCGGAGTCCGTTGAGCCTGGTTTGGCCGGCGTTGATGGTGAATCGGCTAAGGCGATTGTCACTGCGGCTCGTATCGCTGCTCAATCTCTGCGGAGAGCGGCGGCTGGCGCTAGGGCTGTGGCGGAGATGAAGATTAAGAATGCTGCGTTTGCTAAGAAGCAGGCTGCTCTCGCTTTGGAGCGGCTTGCTTATCTTGTGCTACAGGAGAAAGATGGCACTGGATTTGTTAATAGCAATGGAGATGCTATTGCTGGTGAACCCTAG

Protein sequence

MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCFDIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQSESVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALERLAYLVLQEKDGTGFVNSNGDAIAGEP
Homology
BLAST of Sed0010166 vs. NCBI nr
Match: XP_038902666.1 (uncharacterized protein LOC120089301 [Benincasa hispida])

HSP 1 Score: 317.0 bits (811), Expect = 1.2e-82
Identity = 162/208 (77.88%), Postives = 178/208 (85.58%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNR H N+ QSNS+S C+ECGISQS CWILHNVRLKAS RRLCTNCVLK+NLSRFCP+CF
Sbjct: 1   MNRSHCNHLQSNSVSHCQECGISQSACWILHNVRLKASFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQ 120
           D+YDD+T PPSHQRVMCFRCPSISHLSC SFRFSSTFLCP CSDP FAF  G +SGG+ Q
Sbjct: 61  DVYDDSTPPPSHQRVMCFRCPSISHLSCASFRFSSTFLCPLCSDPCFAFFDGFDSGGLCQ 120

Query: 121 SESVEPGLA--GVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALA 180
           SES    LA   VD +SAKAIV AAR++AQS+RRAA  ARAVAEMKIKNAAFAKKQA LA
Sbjct: 121 SESTVAFLARRNVDAKSAKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLA 180

Query: 181 LERLAYLVLQEKDGTGFVNSNGDAIAGE 207
           LERLAYLVLQEKD  G+  +NGDA+AGE
Sbjct: 181 LERLAYLVLQEKDRNGYAKTNGDAVAGE 208

BLAST of Sed0010166 vs. NCBI nr
Match: XP_022955770.1 (uncharacterized protein LOC111457661 [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 3.9e-81
Identity = 159/205 (77.56%), Postives = 173/205 (84.39%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNRPH N+ QSNSIS C ECGISQS CWILHNVR KAS RRLCTNCVLKNNLSRFCP+CF
Sbjct: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQ 120
           DIYDD+T P SHQRVMCFRCPSISH+SC SFRFSSTFLCP CSDP FAF  G +S G+ Q
Sbjct: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQ 174

Query: 121 SESVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALE 180
           SE     LAG DG+SAKAIV AAR+AAQS+RRAAA ARAVAEMKI+NA FAKKQA LALE
Sbjct: 175 SEPAVAVLAGRDGKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALE 234

Query: 181 RLAYLVLQEKDGTGFVNSNGDAIAG 206
           RLA+LVLQEKD  G+  +NG+A AG
Sbjct: 235 RLAFLVLQEKDRNGYAKTNGNAAAG 259

BLAST of Sed0010166 vs. NCBI nr
Match: KAG6582143.1 (hypothetical protein SDJN03_22145, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312.0 bits (798), Expect = 3.9e-81
Identity = 159/205 (77.56%), Postives = 173/205 (84.39%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNRPH N+ QSNSIS C ECGISQS CWILHNVR KAS RRLCTNCVLKNNLSRFCP+CF
Sbjct: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQ 120
           DIYDD+T P SHQRVMCFRCPSISH+SC SFRFSSTFLCP CSDP FAF  G +S G+ Q
Sbjct: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQ 174

Query: 121 SESVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALE 180
           SE     LAG DG+SAKAIV AAR+AAQS+RRAAA ARAVAEMKI+NA FAKKQA LALE
Sbjct: 175 SEPAVAVLAGRDGKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALE 234

Query: 181 RLAYLVLQEKDGTGFVNSNGDAIAG 206
           RLA+LVLQEKD  G+  +NG+A AG
Sbjct: 235 RLAFLVLQEKDRNGYAKTNGNAAAG 259

BLAST of Sed0010166 vs. NCBI nr
Match: KAG7018542.1 (hypothetical protein SDJN02_20411, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.0 bits (798), Expect = 3.9e-81
Identity = 159/205 (77.56%), Postives = 173/205 (84.39%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNRPH N+ QSNSIS C ECGISQS CWILHNVR KAS RRLCTNCVLKNNLSRFCP+CF
Sbjct: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQ 120
           DIYDD+T P SHQRVMCFRCPSISH+SC SFRFSSTFLCP CSDP FAF  G +S G+ Q
Sbjct: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQ 174

Query: 121 SESVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALE 180
           SE     LAG DG+SAKAIV AAR+AAQS+RRAAA ARAVAEMKI+NA FAKKQA LALE
Sbjct: 175 SEPAVAVLAGRDGKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALE 234

Query: 181 RLAYLVLQEKDGTGFVNSNGDAIAG 206
           RLA+LVLQEKD  G+  +NG+A AG
Sbjct: 235 RLAFLVLQEKDRNGYAKTNGNAAAG 259

BLAST of Sed0010166 vs. NCBI nr
Match: XP_023527750.1 (uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751.1 uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 5.0e-81
Identity = 159/205 (77.56%), Postives = 172/205 (83.90%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNRPH N+ QSNSIS C ECGISQS CWILHNVR KAS RRLCTNCVLKNNLSRFCP+CF
Sbjct: 1   MNRPHCNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 60

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQ 120
           DIYDD+T P SHQRVMCFRCPSISH+SC SFRFSSTFLCP CSDP FAF  G +SGG+ Q
Sbjct: 61  DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPICSDPCFAFFDGFDSGGLRQ 120

Query: 121 SESVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALE 180
           SE     LAG DG+SAKAIV AAR+AAQS+RRAAA ARAVAEMKI+NA FAKKQA LALE
Sbjct: 121 SEPAVAVLAGRDGKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALE 180

Query: 181 RLAYLVLQEKDGTGFVNSNGDAIAG 206
           RLAYLVL  KD  G+  +NG+A AG
Sbjct: 181 RLAYLVLHGKDRNGYAKTNGNAAAG 205

BLAST of Sed0010166 vs. ExPASy TrEMBL
Match: A0A6J1GVZ7 (uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC111457661 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 159/205 (77.56%), Postives = 173/205 (84.39%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNRPH N+ QSNSIS C ECGISQS CWILHNVR KAS RRLCTNCVLKNNLSRFCP+CF
Sbjct: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQ 120
           DIYDD+T P SHQRVMCFRCPSISH+SC SFRFSSTFLCP CSDP FAF  G +S G+ Q
Sbjct: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQ 174

Query: 121 SESVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALE 180
           SE     LAG DG+SAKAIV AAR+AAQS+RRAAA ARAVAEMKI+NA FAKKQA LALE
Sbjct: 175 SEPAVAVLAGRDGKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALE 234

Query: 181 RLAYLVLQEKDGTGFVNSNGDAIAG 206
           RLA+LVLQEKD  G+  +NG+A AG
Sbjct: 235 RLAFLVLQEKDRNGYAKTNGNAAAG 259

BLAST of Sed0010166 vs. ExPASy TrEMBL
Match: A0A6J1IXP5 (uncharacterized protein LOC111479468 OS=Cucurbita maxima OX=3661 GN=LOC111479468 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.2e-81
Identity = 158/205 (77.07%), Postives = 171/205 (83.41%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNRPH N+ QSNSIS C ECGISQS CWILHNVR KAS RRLCTNCVLKNNLSRFCP+CF
Sbjct: 1   MNRPHCNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 60

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGGVSQ 120
           DIYDD+T P SHQRVMCFRCPSISH+SC SFRFSSTFLCP CSDP FAF  G +SG + Q
Sbjct: 61  DIYDDSTPPSSHQRVMCFRCPSISHISCTSFRFSSTFLCPLCSDPCFAFFDGFDSGSLRQ 120

Query: 121 SESVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALE 180
           SE     LAG DG+SAKAIV AAR+ AQS+RRAAA ARAVAEMK +NA FAKKQA LALE
Sbjct: 121 SELAVSVLAGRDGKSAKAIVAAARVVAQSMRRAAADARAVAEMKFRNAVFAKKQATLALE 180

Query: 181 RLAYLVLQEKDGTGFVNSNGDAIAG 206
           RLAYLVLQEKD  G+  +NG+A AG
Sbjct: 181 RLAYLVLQEKDRNGYAKTNGNAAAG 205

BLAST of Sed0010166 vs. ExPASy TrEMBL
Match: A0A6J1I928 (uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.7e-79
Identity = 156/201 (77.61%), Postives = 173/201 (86.07%), Query Frame = 0

Query: 10  QSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCFDIYDDTTAP 69
           QSNSIS C+ECGI+QSECWILHNVR+KAS RRLCTNC+L+NN+SRFCPVCFD+YDD+TAP
Sbjct: 2   QSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTAP 61

Query: 70  PSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFL--HGSESGGVSQSESVEPG 129
           PSHQRVMCFRCPSISHLSCISFRFSSTFLCP CSDP F F    GS   G+ QSE     
Sbjct: 62  PSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVAT 121

Query: 130 LAG--VDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALERLAYL 189
           LAG  + G+SAKA+V AAR+AAQS+RRAAA ARAVAEMKIKNAAFAKKQA LALERLAYL
Sbjct: 122 LAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYL 181

Query: 190 VLQEKDGTGFVNSNGDAIAGE 207
            L+EKDG  + NSNGDA+AGE
Sbjct: 182 ELEEKDGNEYGNSNGDAVAGE 202

BLAST of Sed0010166 vs. ExPASy TrEMBL
Match: A0A6J1FY52 (uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC111448356 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.7e-79
Identity = 157/201 (78.11%), Postives = 172/201 (85.57%), Query Frame = 0

Query: 10  QSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCFDIYDDTTAP 69
           QSNSIS C+ECGI+QSECWILHNVR+KAS RRLCTNCVL+NN+SRFCPVCFD+YDD+TAP
Sbjct: 2   QSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAP 61

Query: 70  PSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFL--HGSESGGVSQSESVEPG 129
           PSHQRVMCFRCPSISHLSCISFRFSSTFLCP CSDP F F    GS   G+ QSE     
Sbjct: 62  PSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVAT 121

Query: 130 LAG--VDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALERLAYL 189
           LAG  + G+SAKA+V AAR+AAQS+RRAAA ARAVAEMKIKNAAFAKKQA LALERLAYL
Sbjct: 122 LAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYL 181

Query: 190 VLQEKDGTGFVNSNGDAIAGE 207
            L+EKDG    NSNGDA+AGE
Sbjct: 182 ELEEKDGNEHANSNGDAVAGE 202

BLAST of Sed0010166 vs. ExPASy TrEMBL
Match: A0A0A0L5G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.9e-78
Identity = 156/209 (74.64%), Postives = 175/209 (83.73%), Query Frame = 0

Query: 1   MNRPHINNPQSNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCF 60
           MNR H N+ QSNSIS C++CGISQS CWILHNVR KA+ RRLCTNCVLK+NLSRFCP+CF
Sbjct: 66  MNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 125

Query: 61  DIYDDTTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPSCSDPRFAFLHGSESGG-VS 120
           D+Y+D+T PPSH RVMCFRCPSISHLSC+SFRFSSTFLCP CSDPRF F  G +SGG + 
Sbjct: 126 DVYEDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGGSLC 185

Query: 121 QSESVEPGLAG--VDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAAL 180
           QSES    LAG  VD +S KAIV AAR++AQS+RRAA  ARAVAEMKIKNAAFAKKQA L
Sbjct: 186 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 245

Query: 181 ALERLAYLVLQEKDGTGFVNSNGDAIAGE 207
           ALE+LAYLVLQEKD  G+  SNGDA+  E
Sbjct: 246 ALEQLAYLVLQEKDKNGYSKSNGDAVDSE 274

BLAST of Sed0010166 vs. TAIR 10
Match: AT1G09520.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-25
Identity = 71/183 (38.80%), Postives = 106/183 (57.92%), Query Frame = 0

Query: 11  SNSISQCRECGISQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCFDIYDDTTAPP 70
           +NS  +C +CG   S+ W++H VRL+ASLR  CT+C+L+N+ + FCP CF +YD  ++PP
Sbjct: 20  ANSTERCDDCG--SSDAWVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYD--SSPP 79

Query: 71  SHQRVMCF--RCPSISHLSCISFRFSSTFLCPSCSDPR-FAFLHGSESGGVSQSESVEPG 130
           S +RV C    C S++H+ C       ++LCP C DP  F+F               E G
Sbjct: 80  SFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNSFSFFRPIVD---------ENG 139

Query: 131 LAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALERLAYLVL 190
              VD   ++A + AA+IAA S+ +A   A+   + + K AA AKK+A  ALE++  L  
Sbjct: 140 SRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRAREALEQVVMLDA 189

BLAST of Sed0010166 vs. TAIR 10
Match: AT3G17460.1 (PHD finger family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-15
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 0

Query: 18  RECGI-SQSECWILHNVRLKASLRRLCTNCVLKNNLSRFCPVCFDIYDDTTAPPSHQRVM 77
           REC +  + E   +H V    + RRLCT+C+LK     FC VCF+++D+  A P   R++
Sbjct: 8   RECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDN--AVPPQARII 67

Query: 78  CFRCPSISHLSCISFRFS--------------STFLCPSCSDPRFAFLHGSESGGVSQSE 137
           C  CPS +HLSC +   S              S+F C  CS+P F F   S       +E
Sbjct: 68  CVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFPKSR-----VNE 127

Query: 138 SVEPGLAGVDGESAKAIVTAARIAAQSLRRAAAGARAVAEMKIKNAAFAKKQAALALERL 195
            V P    +  +SA A+V A  I+  ++ +A A  +  A  KI  A  AK +A  AL  L
Sbjct: 128 DV-PDETPLTPKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGALTNL 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902666.11.2e-8277.88uncharacterized protein LOC120089301 [Benincasa hispida][more]
XP_022955770.13.9e-8177.56uncharacterized protein LOC111457661 [Cucurbita moschata][more]
KAG6582143.13.9e-8177.56hypothetical protein SDJN03_22145, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018542.13.9e-8177.56hypothetical protein SDJN02_20411, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023527750.15.0e-8177.56uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GVZ71.9e-8177.56uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC1114576... [more]
A0A6J1IXP54.2e-8177.07uncharacterized protein LOC111479468 OS=Cucurbita maxima OX=3661 GN=LOC111479468... [more]
A0A6J1I9286.7e-7977.61uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781... [more]
A0A6J1FY526.7e-7978.11uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC1114483... [more]
A0A0A0L5G41.9e-7874.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G09520.13.2e-2538.80LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12... [more]
AT3G17460.11.3e-1533.85PHD finger family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34451:SF7PHD FINGER FAMILY PROTEINcoord: 3..192
NoneNo IPR availablePANTHERPTHR34451PHD FINGER FAMILY PROTEINcoord: 3..192

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010166.1Sed0010166.1mRNA