Sed0010143 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCATGAACTTGGATTAGGAGCGGTGGTTGGATCTCAAATTTCAAAAAAACAGGAGCGTTTCAGTTTCCATTTTTCTATAAAAACCCAACACAGCTTCTGGTGTTTCCCATCTCCCTGCTGTTTCCTCTTCCTTGTCGGGTTTTCTTTGCTTCGACGAGGTCTCTCAAACCTCGCACGAACAAAGAAACCCGACAATTACAATCACAATCATGGGTCTCCAATCCTCTGTAAAAGCCAAGAGGCTTTGGAATGTTCTAAAGGTGACACTTATTCTAATGGCAAGAGAGGGTCTGGTCTCAAAGAGAAGGTTCATCATGGACATGAACTTGATGGTGAAAAGAGGCAAGCTGTTCAGAAAATCTGTCACCAACTACTTCATGTTCCATCACCAACACCGCCAATCCGATGCCCGAGATATGACACGCGGCGGTTTCGGCATACAGGATTACTACGAGTTCTCTTGCAGCAACACTCCTATTAATCCTGTTTTTTCCCACATGTCAAAGCTCAGCACCAAATACCAAACTTACTTTCCATGTATCAACCTTCCTGTGGAAATGAAAACAAAGCAAGAAGTAGAAGAAGAAGATTCAGATCCTGAGAACATATTAAATTACTTGCAGTATAATGCTCTAAGCCCTGCAATGGAGGGGAGAGGCCATCTCGTGTCGCCATTCGAGGTACGGGTATCGAACTATTCCTCGGATGAAGAAAATGAAATTCTTAGCAGTGAAAGAGGACAAGTGGATAATGAGGCTGAGGAGTTCATCAGAAGGTTCTATGAACAGCTGAAGATGCAACGACGCCTGCAACTACTTCAATATAGTTAATTTCGGCTAATTCATTCTCCTTTTTGTTGTGTGGTTTCCAGATATTCTACATGTTATTCTTTCAAACAACATAATAAATCTGTGTATGGAAAAAGGAAAAATACCGGAGCATTTTATGTATGAATGTTGATTTTTCATAAATGTTAGATGTTAGATTTGTC GCCATGAACTTGGATTAGGAGCGGTGGTTGGATCTCAAATTTCAAAAAAACAGGAGCGTTTCAGTTTCCATTTTTCTATAAAAACCCAACACAGCTTCTGGTGTTTCCCATCTCCCTGCTGTTTCCTCTTCCTTGTCGGGTTTTCTTTGCTTCGACGAGGTCTCTCAAACCTCGCACGAACAAAGAAACCCGACAATTACAATCACAATCATGGGTCTCCAATCCTCTGTAAAAGCCAAGAGGCTTTGGAATGTTCTAAAGGTGACACTTATTCTAATGGCAAGAGAGGGTCTGGTCTCAAAGAGAAGGTTCATCATGGACATGAACTTGATGGTGAAAAGAGGCAAGCTGTTCAGAAAATCTGTCACCAACTACTTCATGTTCCATCACCAACACCGCCAATCCGATGCCCGAGATATGACACGCGGCGGTTTCGGCATACAGGATTACTACGAGTTCTCTTGCAGCAACACTCCTATTAATCCTGTTTTTTCCCACATGTCAAAGCTCAGCACCAAATACCAAACTTACTTTCCATGTATCAACCTTCCTGTGGAAATGAAAACAAAGCAAGAAGTAGAAGAAGAAGATTCAGATCCTGAGAACATATTAAATTACTTGCAGTATAATGCTCTAAGCCCTGCAATGGAGGGGAGAGGCCATCTCGTGTCGCCATTCGAGGTACGGGTATCGAACTATTCCTCGGATGAAGAAAATGAAATTCTTAGCAGTGAAAGAGGACAAGTGGATAATGAGGCTGAGGAGTTCATCAGAAGGTTCTATGAACAGCTGAAGATGCAACGACGCCTGCAACTACTTCAATATAGTTAATTTCGGCTAATTCATTCTCCTTTTTGTTGTGTGGTTTCCAGATATTCTACATGTTATTCTTTCAAACAACATAATAAATCTGTGTATGGAAAAAGGAAAAATACCGGAGCATTTTATGTATGAATGTTGATTTTTCATAAATGTTAGATGTTAGATTTGTC ATGGGTCTCCAATCCTCTGTAAAAGCCAAGAGGCTTTGGAATGTTCTAAAGGTGACACTTATTCTAATGGCAAGAGAGGGTCTGGTCTCAAAGAGAAGGTTCATCATGGACATGAACTTGATGGTGAAAAGAGGCAAGCTGTTCAGAAAATCTGTCACCAACTACTTCATGTTCCATCACCAACACCGCCAATCCGATGCCCGAGATATGACACGCGGCGGTTTCGGCATACAGGATTACTACGAGTTCTCTTGCAGCAACACTCCTATTAATCCTGTTTTTTCCCACATGTCAAAGCTCAGCACCAAATACCAAACTTACTTTCCATGTATCAACCTTCCTGTGGAAATGAAAACAAAGCAAGAAGTAGAAGAAGAAGATTCAGATCCTGAGAACATATTAAATTACTTGCAGTATAATGCTCTAAGCCCTGCAATGGAGGGGAGAGGCCATCTCGTGTCGCCATTCGAGGTACGGGTATCGAACTATTCCTCGGATGAAGAAAATGAAATTCTTAGCAGTGAAAGAGGACAAGTGGATAATGAGGCTGAGGAGTTCATCAGAAGGTTCTATGAACAGCTGAAGATGCAACGACGCCTGCAACTACTTCAATATAGTTAA MGLQSSVKAKRLWNVLKVTLILMAREGLVSKRRFIMDMNLMVKRGKLFRKSVTNYFMFHHQHRQSDARDMTRGGFGIQDYYEFSCSNTPINPVFSHMSKLSTKYQTYFPCINLPVEMKTKQEVEEEDSDPENILNYLQYNALSPAMEGRGHLVSPFEVRVSNYSSDEENEILSSERGQVDNEAEEFIRRFYEQLKMQRRLQLLQYS Homology
BLAST of Sed0010143 vs. NCBI nr
Match: XP_038887134.1 (uncharacterized protein LOC120077324 [Benincasa hispida]) HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81 Identity = 168/228 (73.68%), Postives = 186/228 (81.58%), Query Frame = 0
BLAST of Sed0010143 vs. NCBI nr
Match: XP_022989722.1 (uncharacterized protein LOC111486722 [Cucurbita maxima]) HSP 1 Score: 311.6 bits (797), Expect = 5.0e-81 Identity = 166/219 (75.80%), Postives = 181/219 (82.65%), Query Frame = 0
BLAST of Sed0010143 vs. NCBI nr
Match: XP_022928225.1 (uncharacterized protein LOC111435119 [Cucurbita moschata]) HSP 1 Score: 311.2 bits (796), Expect = 6.6e-81 Identity = 167/222 (75.23%), Postives = 182/222 (81.98%), Query Frame = 0
BLAST of Sed0010143 vs. NCBI nr
Match: KAG7022606.1 (hypothetical protein SDJN02_16340, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 308.5 bits (789), Expect = 4.3e-80 Identity = 165/223 (73.99%), Postives = 180/223 (80.72%), Query Frame = 0
BLAST of Sed0010143 vs. NCBI nr
Match: KAG6588851.1 (hypothetical protein SDJN03_17416, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 306.2 bits (783), Expect = 2.1e-79 Identity = 165/227 (72.69%), Postives = 180/227 (79.30%), Query Frame = 0
BLAST of Sed0010143 vs. ExPASy TrEMBL
Match: A0A6J1JGM3 (uncharacterized protein LOC111486722 OS=Cucurbita maxima OX=3661 GN=LOC111486722 PE=4 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 2.4e-81 Identity = 166/219 (75.80%), Postives = 181/219 (82.65%), Query Frame = 0
BLAST of Sed0010143 vs. ExPASy TrEMBL
Match: A0A6J1ER45 (uncharacterized protein LOC111435119 OS=Cucurbita moschata OX=3662 GN=LOC111435119 PE=4 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 3.2e-81 Identity = 167/222 (75.23%), Postives = 182/222 (81.98%), Query Frame = 0
BLAST of Sed0010143 vs. ExPASy TrEMBL
Match: A0A5D3DYM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001870 PE=4 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 4.3e-78 Identity = 172/232 (74.14%), Postives = 185/232 (79.74%), Query Frame = 0
BLAST of Sed0010143 vs. ExPASy TrEMBL
Match: A0A1S3BNR6 (uncharacterized protein LOC103491858 OS=Cucumis melo OX=3656 GN=LOC103491858 PE=4 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 4.3e-78 Identity = 172/232 (74.14%), Postives = 185/232 (79.74%), Query Frame = 0
BLAST of Sed0010143 vs. ExPASy TrEMBL
Match: A0A0A0L6S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G251950 PE=4 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 5.6e-78 Identity = 169/228 (74.12%), Postives = 184/228 (80.70%), Query Frame = 0
BLAST of Sed0010143 vs. TAIR 10
Match: AT1G52140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-11 Identity = 66/209 (31.58%), Postives = 100/209 (47.85%), Query Frame = 0
BLAST of Sed0010143 vs. TAIR 10
Match: AT3G16330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 4.6e-08 Identity = 54/209 (25.84%), Postives = 94/209 (44.98%), Query Frame = 0
BLAST of Sed0010143 vs. TAIR 10
Match: AT4G32860.1 (unknown protein; Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06 Identity = 59/207 (28.50%), Postives = 99/207 (47.83%), Query Frame = 0
BLAST of Sed0010143 vs. TAIR 10
Match: AT5G38700.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 1.9e-06 Identity = 53/200 (26.50%), Postives = 91/200 (45.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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