Sed0009791 (gene) Chayote v1

Overview


Name	Sed0009791
Type	gene
Organism	Sechium edule (Chayote v1)
Description	extensin-like
Location	LG03: 2840580 .. 2841358 (+)
RNA-Seq Expression	Sed0009791
Synteny	Sed0009791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTAATTTACTCCTTTTTATTATTTATTTGTCGCATTTTTCATATAAAATGTGGGTGTTCGATGCCAGTTTCAAACTCACATACCTAAAACCAATCTTGAAAAGGGAAACGAAACAATGGGGTCTCTAAAATTAGCCTCCTATCTTTCATTTCTTCTCATTGCATTTCTGTCTTTAGATTTGCCTTCAACATTGACTGCATATTCTATTCGCTCATCTTCATCCCCCAAGCCTTTTCAATTCAAACCTCCGCTACCGCCGTCTAAAAGACTCACGTTCCCTCCCCCTCCTGGCTGCACGGTGGGTTCACCACCGTCAGCCGAAATAAAGTCTCCACCACTGCCTCCACCGCCGCCCAAGTTTCAATGGCCCAAGAGATTTACCCGTAAATCTCCTCCACCTCCTTTCTAAGGCATTACGAGTGAAGGTAAAAGTGATTGACCTTTTGTTTTGTTTTGTTTTTTAGTACAAATAGGGAGATGGAGACCACAAATTCTATGTAAAGGATATTGCCGCTATCAAATAAATAAAAGTTAAATATCGATTATGAGATCGAACTTATGACCGTGGCTTTGTTCTTTTGGGGAAGATGTCACGTGGGGTTTACTCAATTTGTAACGTTGGATTGAAAATTAAAATGTTTATCACAAAGAGGCTTCGTACTTACCTACCTTATTCTTTTATAAAAATTAATGTATTTCTGACTGAGCAATACTTGGTACATCCTAAACAATTTTATAAAGAGAGTTATCTGACATATTATAGATGCATGTTATGAG

mRNA sequence

TTCTAATTTACTCCTTTTTATTATTTATTTGTCGCATTTTTCATATAAAATGTGGGTGTTCGATGCCAGTTTCAAACTCACATACCTAAAACCAATCTTGAAAAGGGAAACGAAACAATGGGGTCTCTAAAATTAGCCTCCTATCTTTCATTTCTTCTCATTGCATTTCTGTCTTTAGATTTGCCTTCAACATTGACTGCATATTCTATTCGCTCATCTTCATCCCCCAAGCCTTTTCAATTCAAACCTCCGCTACCGCCGTCTAAAAGACTCACGTTCCCTCCCCCTCCTGGCTGCACGGTGGGTTCACCACCGTCAGCCGAAATAAAGTCTCCACCACTGCCTCCACCGCCGCCCAAGTTTCAATGGCCCAAGAGATTTACCCGTAAATCTCCTCCACCTCCTTTCTAAGGCATTACGAGTGAAGGTAAAAGTGATTGACCTTTTGTTTTGTTTTGTTTTTTAGTACAAATAGGGAGATGGAGACCACAAATTCTATGTAAAGGATATTGCCGCTATCAAATAAATAAAAGTTAAATATCGATTATGAGATCGAACTTATGACCGTGGCTTTGTTCTTTTGGGGAAGATGTCACGTGGGGTTTACTCAATTTGTAACGTTGGATTGAAAATTAAAATGTTTATCACAAAGAGGCTTCGTACTTACCTACCTTATTCTTTTATAAAAATTAATGTATTTCTGACTGAGCAATACTTGGTACATCCTAAACAATTTTATAAAGAGAGTTATCTGACATATTATAGATGCATGTTATGAG

Coding sequence (CDS)

ATGGGGTCTCTAAAATTAGCCTCCTATCTTTCATTTCTTCTCATTGCATTTCTGTCTTTAGATTTGCCTTCAACATTGACTGCATATTCTATTCGCTCATCTTCATCCCCCAAGCCTTTTCAATTCAAACCTCCGCTACCGCCGTCTAAAAGACTCACGTTCCCTCCCCCTCCTGGCTGCACGGTGGGTTCACCACCGTCAGCCGAAATAAAGTCTCCACCACTGCCTCCACCGCCGCCCAAGTTTCAATGGCCCAAGAGATTTACCCGTAAATCTCCTCCACCTCCTTTCTAA

Protein sequence

MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLTFPPPPGCTVGSPPSAEIKSPPLPPPPPKFQWPKRFTRKSPPPPF

Homology

[Close]

BLAST of Sed0009791 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQF-KPPLPPSKRLTFPPPPG 60
          MG   LASYL  LLIAF  L+LP+ LTA+ I  SSS   + +  PPLP       PPPP 
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLP-----PPPPI 60

Query: 61 CTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPPPPF 98
          C  G+PP A+ ++     P L PPPP F+WP+RFT KSPPPPF
Sbjct: 61 CRQGAPPPAKKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Sed0009791 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-08
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 1   MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTF 60
           MGSL L S YL  LLIA LSLDLPS L A S+  S    P Q++PP P     PSK+L +
Sbjct: 1   MGSLILPSFYLFSLLIALLSLDLPSKLAAPSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PPPPGCT-VGSPPSAEIKSPPLPPPPPKFQWPKRFTRKSPPPPF 98
           PPP  CT +  PP  + +    P PP    W ++FT KSPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPKNRHKFKPSPPHPMPWQRKFTHKSPPPPF 104

[Close]

BLAST of Sed0009791 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-07
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-PSKRLTFPPPP 60
           MGSL LAS YL  LLIA LSLDLPS L A S+  S    P +++PP P PS++L +PPP 
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPS 60

Query: 61  GCTVGSPPSAEIK-----SPPLPPPPPKFQWPKRFTRKSPPPPF 98
            CT  +PP  + +     SPP   PP    W ++FT  SPPPPF
Sbjct: 61  VCTQLAPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 100

[Close]

BLAST of Sed0009791 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-07
Identity = 57/140 (40.71%), Postives = 65/140 (46.43%), Query Frame = 0


Query: 1   MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLT----FPP 60
           MG + LASYL FLL AF SL+LPS LTA+ I  SS  K  ++KPP  P  RL      PP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  PPGCTVGSPPSA-------------------------------EIKSPPLP--------P 98
           PP      PPS                                  KSPPLP         
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

[Close]

BLAST of Sed0009791 vs. NCBI nr
Match: XP_022939147.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-07
Identity = 54/110 (49.09%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTF 60
           MGSL L+S YL  LLIA LSLDLPS L A S+  S    P Q++PP P     PSK+L +
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PPPPGCTVGSPPSAEIK-------SPPLPPPPPKFQWPKRFTRKSPPPPF 98
           PPP  CT  +PP    K       SPP   PP    W ++FT  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 106

[Close]

BLAST of Sed0009791 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12
Identity = 55/102 (53.92%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLTFPPPPGC 60
          MG   LASYL  LLIAF  L+LPS LTA+ I  SSS   +++ PP  P      PPPP C
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLP----LLPPPPIC 60

Query: 61 TVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPPPPF 98
            G+PP A+ ++     P L PPPPKF+WP+RFT KSPPPPF
Sbjct: 61 RQGAPPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Sed0009791 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQF-KPPLPPSKRLTFPPPPG 60
          MG   LASYL  LLIAF  L+LP+ LTA+ I  SSS   + +  PPLP       PPPP 
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLP-----PPPPI 60

Query: 61 CTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPPPPF 98
          C  G+PP A+ ++     P L PPPP F+WP+RFT KSPPPPF
Sbjct: 61 CRQGAPPPAKKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Sed0009791 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-PSKRLTFPPPP 60
           MGSL LAS YL  LLIA LSLDLPS L A S+  S    P +++PP P PS++L +PPP 
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPS 60

Query: 61  GCTVGSPPSAEIK-----SPPLPPPPPKFQWPKRFTRKSPPPPF 98
            CT  +PP  + +     SPP   PP    W ++FT  SPPPPF
Sbjct: 61  VCTQLAPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 100

[Close]

BLAST of Sed0009791 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-07
Identity = 57/140 (40.71%), Postives = 65/140 (46.43%), Query Frame = 0


Query: 1   MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLT----FPP 60
           MG + LASYL FLL AF SL+LPS LTA+ I  SS  K  ++KPP  P  RL      PP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  PPGCTVGSPPSA-------------------------------EIKSPPLP--------P 98
           PP      PPS                                  KSPPLP         
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

[Close]

BLAST of Sed0009791 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-07
Identity = 54/110 (49.09%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTF 60
           MGSL L+S YL  LLIA LSLDLPS L A S+  S    P Q++PP P     PSK+L +
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PPPPGCTVGSPPSAEIK-------SPPLPPPPPKFQWPKRFTRKSPPPPF 98
           PPP  CT  +PP    K       SPP   PP    W ++FT  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 106

The following BLAST results are available for this feature:

BLAST of Sed0009791 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058957.1	2.4e-09	52.43	hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK1099...	[more]
XP_023551507.1	5.9e-08	50.00	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993352.1	5.0e-07	50.00	extensin-like [Cucurbita maxima]	[more]
TYK29731.1	6.6e-07	40.71	hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]	[more]
XP_022939147.1	6.6e-07	49.09	extensin-like [Cucurbita moschata]	[more]

BLAST of Sed0009791 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI69	5.6e-12	53.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]
A0A5A7UW72	1.2e-09	52.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JSJ5	2.4e-07	50.00	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1	[more]
A0A5D3E2A1	3.2e-07	40.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FFZ9	3.2e-07	49.09	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1	[more]

BLAST of Sed0009791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009791.1	Sed0009791.1	mRNA