Sed0009630 (gene) Chayote v1

Overview
NameSed0009630
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S26
LocationLG04: 41014138 .. 41018037 (-)
RNA-Seq ExpressionSed0009630
SyntenySed0009630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGCAATCGGGTGAAGTAACATTTTTGTTTAAATTTTATTTAGATTAAAGTGAGCAAATACATTGTCTCAAAAAAAAAAAGTGAGCAAATACATAAACATACATAAGTTATTGTAATACTATAGCAACCACCAAAATAATATAATACTTATCATTATCATTATTTTTTTATATTATAGTTCATGTACTTTCAAAACATTCAAATTTAGAATATATAATTTCAAGTATTAATTTTGAATCTACAATAAAAGTCATAATTTTGAACCTTAAAGTTTGCTTCAAACAACATTTCAAAGCATTTTTTTAAAATGATGTAAAAAGACTTTAAAAGCCAAAGATTTAAAATGAATCTTTTTTAAGTTGGTACTTTATAATATATTTGTTTGTTTATTTTGAATTTAAAAGTAATGAAAAGTAAAAATCCTCAATTAATGCTATATAGGTCAAAGATGTTTTTGTGTTGAATTCAACAACAAATTCGTAATTAATTGGTTATTATATGATACATGATGTCGCATTTTATGTATAATGATTCTTTTGTACCAATTTAGTTTTATTTAATGATTTATCTAAATTGGACAGTTAGAGGTAACAAATATCATCCTCTAGTTCAGTTCATTTTTTTTTAAATTTAATTTAATTTTTTGAATAAAAATTGACAAATGAGATCTCTGCATAAAATAACTCAAAAATAAATAAAAGTTAAATATCAATTTTCATAATTAAATCGGTATAATATTGTTGAACTTTAGCATCATTAGGTTGATTTTTTGCAATTTTTTTTACTCCTTACTAAAGTATGGCATATTGATTTGAAGACTGATCGGACATATATTCCTTTTAATACTTGGGCTTCGAGACTCACCTTGTAATATTATTTATTCTTTTCTAGCCCTAACTTAGAGACCAGCGTTCTTTCTAAAAAGAAAAACTATTTAACTTTTATTGGTTTGGACTCGGCGTTGGCGGGACCGGAGATGTATTAGGCGTTTACCGGCAGAAATGTAAGAACTCTCACACTCATCACTTAAACTCAAAAACCCTAATCGGCTGCTTCAATCTGCTTCAAGATCTAAAGTTTTGAAACAATGGTAAGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGTTCTTGCTTATGATTATCTCCATAGTTTAATGGCGGGGGGCAAATCTATATGCCGTGCATATGTTTCCGGCGAAATTGGGTGCTTTTGTGTTTAATTAGGTTTTCGGGTTAATGTTAGACTACCAATATTACTGGTGTATTCATTATTTGGATGATCTAGCTAGGTATCAGTGTCCGCCAAGTTCAGGGTATGCGATTTATTATTATTATTATTATTATTGAAACAAGGTAAACTACGCCTGTCTCTAGGCCAGGCACCAGAGACATCGAAGGAGTAACGTCATTGGTGAATCCCGAACTCAAGATCTGGAAGGGAGCATACCTTCAAAACTAAGTTTTTATCCACTGCACTACTCTTTGGGGACATTTATTATTATTATTTTTTAACGTAGAATGTTGGTGTGCCCATCTATTTTGCATTTTTATTGTTGTTAAGAGATTTTCTTGATGGTTTTTGCTGAATCATATTAAATCATCGATCAATATGGATAAATTTAATTATATCAACCAATTCTCTCCTCACTTGTAGACTTGAAAATTTTAAAAATATTTCAGATAAGAATCAATATTAATTGGATAGGTTTGAACCTAGGACCCTCTTACATTGATTGATACCATGTTGAATCATGTTAAATCTGCAATTAACCAAAAGTTTAAATTATAGGTGGGAAAAAATTTAATTATATTAACCAACCATTGTTTTTATTGGTAATCAGGTTGTTTTTCAGTACTCGATCGAACAGTTTTAAGATTTGTACAATGTTTGCAATTAAATTTTGGCTTGTTCCTCATGCTGCTTTGATGGCTTAAAGCTTGCTTATTTTGTTTGAGTGGTCGTTGACTATTGATCCAGAGCTGTTCAATATTCTTTTATGCAAAGATGTGAAGAACGATGATGATTTAATCTAACTTCATGAATTTTGATTAATGAAAATAGGACGAGGCTATTAAGAGATTTCTTGTGAGGAATGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCGTTAGTTATTCTGTCCCATCCTGCTATCTTTTGGTTTCTTTATTTCAATTATCTTTATTCAGTGTCTGAAATAGATTTTTTTTTCTTCCCCAAGCTTTATGCTAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGTTAGTTGTTCCATAAAATATTTATAACTTTGATTCATAATGTAGTAAACATATTAACATTTAGCAGTGAATTTGTTTGATAAAGCGTGCCTAATTATTTGCTCTTAGTCTATTATTACTCACATATGAACATTTATAGCATTGATGCATCCTGACTGTGCATTTGGTATAGTTTGTTTATCTCTGCCTTTTCTGTAATTTGATTAGCTCAAATTTTATGATGGGGGCAGCAGATTTGCAATCATAATGTTGTGTTATGCTTCTTTATTATCATTCATTAATGTGTGAAATTCCTCGTAGGATCTGGCTACAATTTTTATAAAAAAAAAGTTAATATGGAGACTTGGGTCACTCTTGCATCTGGCACTCTGTGTTCGTATGCTTGTTATCAAAATGAATACATTCATATAACTATGTATAAGAAAGTCCCCAAGGAGTGACACGACTTGGGTTTTGAGGATATGTTCTTCTCAAGGTTCCAAATTCGAGACTCAGCTGTGACATTACTCCTTCGTTTATTTGTTCTACAATGACATTCTACGTCTTAATTATTCTTAGTTCAACTATATCTCTGTCTATCTAATACTTTGATTCAGCAGTCATATTTAGAGTGGCCTTTTGATTCATTGTTGCCCTGTTCTGTTGGTGTGTGTTTCAGGATGATCAGCCAAATCCAGGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAAAGAAACCTTTTTAGTTTTTATGGCTTCTATGAGCAATTCGTAGAGATCTTTTATCCCATAAGTTTTTTTTGTCTTGTGGATGATAGTGAATTTTTTAATCAATTCGTAAACAAACACGACAATTTTGCAACTTTGAGGGGGTGATTGGATGAGGTTTTGATGGGGAGATAGTATGAGAAGTTATTTTGAGTAGTTAACAAGTGAGAGTTGTAGTCTAAAATTGTTTGGATGTAGTTCTTTTGTAGAGGAGTTAAAGTAAGAAACTTGTTTGGATGTAGATTTTTAATTAGTAGTTATTTTGAGTAGTTAAAAAAATAATGATAAGAAACGAGTGGTTAAAAATGAGTTATTTTGAATAATTAAAAATGAATGATTAGAAATGAGTAGTTAAAAATGATTGAGTAGTTATAAATGAATGAATAGAAATAAATGGTTAAAAATGAAGAGTTGTTTTTAATAGTAAAAATGAGGACTTATATTGAGGAGTTACAAAAATTTGTTTGGTTGTAAATTTTCGAGGAGTTGGTAAATCCTCCATAAATATGGCAAACAAACACCCCCTAAGGAGCTAAGGACCAGGTTTATTGAGTTATATAATGTTTTTTTTTCAGTTTCTTGTTGAATTTGGTTGTTCACCCTTTTTTTTTTTTGATTTTTTTTTCTTTCTCTTAATTCATCATTTCTAATCATCTTGAAATCTTTGACATGTTTCCCTCCCCTCGTTCTTGTTGGCAGCAGGGAATGTAGGGATGCAGCCAAAAT

mRNA sequence

ATGGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGACGAGGCTATTAAGAGATTTCTTGTGAGGAATGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAAAGAAACCTTTTTAGTTTTTATGGCTTCTATGAGCAATTCGTAGAGATCTTTTATCCCATAAGTTTTTTTTGTCTTGTGGATGATAGTGAATTTTTTAATCAATTCGTAAACAAACACGACAATTTTGCAACTTTGAGGGGGTGATTGGATGAGGTTTTGATGGGGAGATAGTATGAGAAGTTATTTTGAGTAGTTAACAAGTGAGAGTTGTAGTCTAAAATTGTTTGGATGTAGTTCTTTTGTAGAGGAGTTAAAGTAAGAAACTTGTTTGGATGTAGATTTTTAATTAGTAGTTATTTTGAGTAGTTAAAAAAATAATGATAAGAAACGAGTGGTTAAAAATGAGTTATTTTGAATAATTAAAAATGAATGATTAGAAATGAGTAGTTAAAAATGATTGAGTAGTTATAAATGAATGAATAGAAATAAATGGTTAAAAATGAAGAGTTGTTTTTAATAGTAAAAATGAGGACTTATATTGAGGAGTTACAAAAATTTGTTTGGTTGTAAATTTTCGAGGAGTTGGTAAATCCTCCATAAATATGGCAAACAAACACCCCCTAAGGAGCTAAGGACCAGGTTTATTGAGTTATATAATGTTTTTTTTTCAGTTTCTTGTTGAATTTGGTTGTTCACCCTTTTTTTTTTTTGATTTTTTTTTCTTTCTCTTAATTCATCATTTCTAATCATCTTGAAATCTTTGACATGTTTCCCTCCCCTCGTTCTTGTTGGCAGCAGGGAATGTAGGGATGCAGCCAAAAT

Coding sequence (CDS)

ATGGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGACGAGGCTATTAAGAGATTTCTTGTGAGGAATGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAA

Protein sequence

MDHPSIKFFSESSCPKSLLFYSHFCPDEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLCYSLTCSHVVRVRSRTDRRNRQPPQRFIRQSQAPRPVGAGNPARV
Homology
[Close]
BLAST of Sed0009630 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]
BLAST of Sed0009630 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]
BLAST of Sed0009630 vs. NCBI nr
Match: XP_022996709.1 (40S ribosomal protein S26-3-like [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]
BLAST of Sed0009630 vs. NCBI nr
Match: KAG6599946.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030627.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.2 bits (287), Expect = 3.5e-22
Identity = 72/125 (57.60%), Postives = 81/125 (64.80%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------------SQAPRPVGAG 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+                 QAPRPVGAG
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQPGQAPRPVGAG 135

[Close]
BLAST of Sed0009630 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 71/119 (59.66%), Postives = 79/119 (66.39%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRP GAG PARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPAGAGIPARV 129

[Close]
BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-16
Identity = 57/110 (51.82%), Postives = 71/110 (64.55%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFL--- 65
           +K+   S+C K        CP D+AIKRF VRN+VEQAA+RDVQEACV+D  VL  L   
Sbjct: 18  VKYIRCSNCAKC-------CPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAK 77

Query: 66  ---CYSLTC-SHVVRVRSRTDRRNRQPPQRFIRQS---QAPRPVGAGNPA 105
              C S    +H+VRVRSR +RR+R+PP+RF R+    Q PRP G G PA
Sbjct: 78  VHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRREDRPQGPRP-GGGAPA 119

[Close]
BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0 

Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]
BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0 

Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]
BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-15
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G PA
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPAQPGQAPRPAG-GAPA 126

[Close]
BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: Q56JV1 (40S ribosomal protein S26 OS=Bos taurus OX=9913 GN=RPS26 PE=3 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-10
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 27  DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDR 86
           D+AIK+F++RN+VE AAVRD+ EA V+D  VL      L Y ++C   S VVR RSR  R
Sbjct: 33  DKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREAR 92

Query: 87  RNRQPPQRFIRQSQAPRP 98
           ++R PP RF     APRP
Sbjct: 93  KDRTPPPRFRPAGAAPRP 110

[Close]
BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]
BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]
BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]
BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A6J1K9H1 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111491873 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.7e-23
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]
BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A6J1FPQ0 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.7e-23
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0 

Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]
BLAST of Sed0009630 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0 

Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]
BLAST of Sed0009630 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0 

Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]
BLAST of Sed0009630 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-16
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G PA
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPAQPGQAPRPAG-GAPA 126

The following BLAST results are available for this feature:
BLAST of Sed0009630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146441.14.2e-2361.3440S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S rib... [more]
XP_022941874.11.6e-2259.0240S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S riboso... [more]
XP_022996709.11.6e-2259.0240S ribosomal protein S26-3-like [Cucurbita maxima][more]
KAG6599946.13.5e-2257.6040S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KA... [more]
XP_022943123.11.3e-2159.6640S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso... [more]
BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P492165.2e-1651.8240S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2... [more]
P492062.0e-1555.1040S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2[more]
Q8LPJ72.0e-1555.1040S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2[more]
Q9LYK94.4e-1556.1240S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1[more]
Q56JV15.5e-1051.2840S ribosomal protein S26 OS=Bos taurus OX=9913 GN=RPS26 PE=3 SV=3[more]
BLAST of Sed0009630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VIJ02.0e-2361.3440S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0KM452.0e-2361.3440S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1[more]
A0A1S3C5M12.0e-2361.3440S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1[more]
A0A6J1K9H17.7e-2359.0240S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111491873 PE=3 SV=1[more]
A0A6J1FPQ07.7e-2359.0240S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=... [more]
BLAST of Sed0009630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40510.11.4e-1655.10Ribosomal protein S26e family protein [more]
AT2G40590.11.4e-1655.10Ribosomal protein S26e family protein [more]
AT3G56340.13.1e-1656.12Ribosomal protein S26e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000892Ribosomal protein S26ePFAMPF01283Ribosomal_S26ecoord: 26..93
e-value: 1.2E-17
score: 64.3
IPR000892Ribosomal protein S26ePANTHERPTHR1253840S RIBOSOMAL PROTEIN S26coord: 24..104
IPR038551Ribosomal protein S26e superfamilyGENE3D3.30.1740.20Ribosomal protein S26ecoord: 15..100
e-value: 2.6E-20
score: 74.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..106
NoneNo IPR availablePANTHERPTHR12538:SF1640S RIBOSOMAL PROTEIN S26coord: 24..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009630.1Sed0009630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0005488 binding
molecular_function GO:0003735 structural constituent of ribosome