Sed0009630 (gene) Chayote v1

Overview


Name	Sed0009630
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S26
Location	LG04: 41014138 .. 41018037 (-)
RNA-Seq Expression	Sed0009630
Synteny	Sed0009630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGCAATCGGGTGAAGTAACATTTTTGTTTAAATTTTATTTAGATTAAAGTGAGCAAATACATTGTCTCAAAAAAAAAAAGTGAGCAAATACATAAACATACATAAGTTATTGTAATACTATAGCAACCACCAAAATAATATAATACTTATCATTATCATTATTTTTTTATATTATAGTTCATGTACTTTCAAAACATTCAAATTTAGAATATATAATTTCAAGTATTAATTTTGAATCTACAATAAAAGTCATAATTTTGAACCTTAAAGTTTGCTTCAAACAACATTTCAAAGCATTTTTTTAAAATGATGTAAAAAGACTTTAAAAGCCAAAGATTTAAAATGAATCTTTTTTAAGTTGGTACTTTATAATATATTTGTTTGTTTATTTTGAATTTAAAAGTAATGAAAAGTAAAAATCCTCAATTAATGCTATATAGGTCAAAGATGTTTTTGTGTTGAATTCAACAACAAATTCGTAATTAATTGGTTATTATATGATACATGATGTCGCATTTTATGTATAATGATTCTTTTGTACCAATTTAGTTTTATTTAATGATTTATCTAAATTGGACAGTTAGAGGTAACAAATATCATCCTCTAGTTCAGTTCATTTTTTTTTAAATTTAATTTAATTTTTTGAATAAAAATTGACAAATGAGATCTCTGCATAAAATAACTCAAAAATAAATAAAAGTTAAATATCAATTTTCATAATTAAATCGGTATAATATTGTTGAACTTTAGCATCATTAGGTTGATTTTTTGCAATTTTTTTTACTCCTTACTAAAGTATGGCATATTGATTTGAAGACTGATCGGACATATATTCCTTTTAATACTTGGGCTTCGAGACTCACCTTGTAATATTATTTATTCTTTTCTAGCCCTAACTTAGAGACCAGCGTTCTTTCTAAAAAGAAAAACTATTTAACTTTTATTGGTTTGGACTCGGCGTTGGCGGGACCGGAGATGTATTAGGCGTTTACCGGCAGAAATGTAAGAACTCTCACACTCATCACTTAAACTCAAAAACCCTAATCGGCTGCTTCAATCTGCTTCAAGATCTAAAGTTTTGAAACAATGGTAAGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGTTCTTGCTTATGATTATCTCCATAGTTTAATGGCGGGGGGCAAATCTATATGCCGTGCATATGTTTCCGGCGAAATTGGGTGCTTTTGTGTTTAATTAGGTTTTCGGGTTAATGTTAGACTACCAATATTACTGGTGTATTCATTATTTGGATGATCTAGCTAGGTATCAGTGTCCGCCAAGTTCAGGGTATGCGATTTATTATTATTATTATTATTATTGAAACAAGGTAAACTACGCCTGTCTCTAGGCCAGGCACCAGAGACATCGAAGGAGTAACGTCATTGGTGAATCCCGAACTCAAGATCTGGAAGGGAGCATACCTTCAAAACTAAGTTTTTATCCACTGCACTACTCTTTGGGGACATTTATTATTATTATTTTTTAACGTAGAATGTTGGTGTGCCCATCTATTTTGCATTTTTATTGTTGTTAAGAGATTTTCTTGATGGTTTTTGCTGAATCATATTAAATCATCGATCAATATGGATAAATTTAATTATATCAACCAATTCTCTCCTCACTTGTAGACTTGAAAATTTTAAAAATATTTCAGATAAGAATCAATATTAATTGGATAGGTTTGAACCTAGGACCCTCTTACATTGATTGATACCATGTTGAATCATGTTAAATCTGCAATTAACCAAAAGTTTAAATTATAGGTGGGAAAAAATTTAATTATATTAACCAACCATTGTTTTTATTGGTAATCAGGTTGTTTTTCAGTACTCGATCGAACAGTTTTAAGATTTGTACAATGTTTGCAATTAAATTTTGGCTTGTTCCTCATGCTGCTTTGATGGCTTAAAGCTTGCTTATTTTGTTTGAGTGGTCGTTGACTATTGATCCAGAGCTGTTCAATATTCTTTTATGCAAAGATGTGAAGAACGATGATGATTTAATCTAACTTCATGAATTTTGATTAATGAAAATAGGACGAGGCTATTAAGAGATTTCTTGTGAGGAATGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCGTTAGTTATTCTGTCCCATCCTGCTATCTTTTGGTTTCTTTATTTCAATTATCTTTATTCAGTGTCTGAAATAGATTTTTTTTTCTTCCCCAAGCTTTATGCTAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGTTAGTTGTTCCATAAAATATTTATAACTTTGATTCATAATGTAGTAAACATATTAACATTTAGCAGTGAATTTGTTTGATAAAGCGTGCCTAATTATTTGCTCTTAGTCTATTATTACTCACATATGAACATTTATAGCATTGATGCATCCTGACTGTGCATTTGGTATAGTTTGTTTATCTCTGCCTTTTCTGTAATTTGATTAGCTCAAATTTTATGATGGGGGCAGCAGATTTGCAATCATAATGTTGTGTTATGCTTCTTTATTATCATTCATTAATGTGTGAAATTCCTCGTAGGATCTGGCTACAATTTTTATAAAAAAAAAGTTAATATGGAGACTTGGGTCACTCTTGCATCTGGCACTCTGTGTTCGTATGCTTGTTATCAAAATGAATACATTCATATAACTATGTATAAGAAAGTCCCCAAGGAGTGACACGACTTGGGTTTTGAGGATATGTTCTTCTCAAGGTTCCAAATTCGAGACTCAGCTGTGACATTACTCCTTCGTTTATTTGTTCTACAATGACATTCTACGTCTTAATTATTCTTAGTTCAACTATATCTCTGTCTATCTAATACTTTGATTCAGCAGTCATATTTAGAGTGGCCTTTTGATTCATTGTTGCCCTGTTCTGTTGGTGTGTGTTTCAGGATGATCAGCCAAATCCAGGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAAAGAAACCTTTTTAGTTTTTATGGCTTCTATGAGCAATTCGTAGAGATCTTTTATCCCATAAGTTTTTTTTGTCTTGTGGATGATAGTGAATTTTTTAATCAATTCGTAAACAAACACGACAATTTTGCAACTTTGAGGGGGTGATTGGATGAGGTTTTGATGGGGAGATAGTATGAGAAGTTATTTTGAGTAGTTAACAAGTGAGAGTTGTAGTCTAAAATTGTTTGGATGTAGTTCTTTTGTAGAGGAGTTAAAGTAAGAAACTTGTTTGGATGTAGATTTTTAATTAGTAGTTATTTTGAGTAGTTAAAAAAATAATGATAAGAAACGAGTGGTTAAAAATGAGTTATTTTGAATAATTAAAAATGAATGATTAGAAATGAGTAGTTAAAAATGATTGAGTAGTTATAAATGAATGAATAGAAATAAATGGTTAAAAATGAAGAGTTGTTTTTAATAGTAAAAATGAGGACTTATATTGAGGAGTTACAAAAATTTGTTTGGTTGTAAATTTTCGAGGAGTTGGTAAATCCTCCATAAATATGGCAAACAAACACCCCCTAAGGAGCTAAGGACCAGGTTTATTGAGTTATATAATGTTTTTTTTTCAGTTTCTTGTTGAATTTGGTTGTTCACCCTTTTTTTTTTTTGATTTTTTTTTCTTTCTCTTAATTCATCATTTCTAATCATCTTGAAATCTTTGACATGTTTCCCTCCCCTCGTTCTTGTTGGCAGCAGGGAATGTAGGGATGCAGCCAAAAT

mRNA sequence

ATGGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGACGAGGCTATTAAGAGATTTCTTGTGAGGAATGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAAAGAAACCTTTTTAGTTTTTATGGCTTCTATGAGCAATTCGTAGAGATCTTTTATCCCATAAGTTTTTTTTGTCTTGTGGATGATAGTGAATTTTTTAATCAATTCGTAAACAAACACGACAATTTTGCAACTTTGAGGGGGTGATTGGATGAGGTTTTGATGGGGAGATAGTATGAGAAGTTATTTTGAGTAGTTAACAAGTGAGAGTTGTAGTCTAAAATTGTTTGGATGTAGTTCTTTTGTAGAGGAGTTAAAGTAAGAAACTTGTTTGGATGTAGATTTTTAATTAGTAGTTATTTTGAGTAGTTAAAAAAATAATGATAAGAAACGAGTGGTTAAAAATGAGTTATTTTGAATAATTAAAAATGAATGATTAGAAATGAGTAGTTAAAAATGATTGAGTAGTTATAAATGAATGAATAGAAATAAATGGTTAAAAATGAAGAGTTGTTTTTAATAGTAAAAATGAGGACTTATATTGAGGAGTTACAAAAATTTGTTTGGTTGTAAATTTTCGAGGAGTTGGTAAATCCTCCATAAATATGGCAAACAAACACCCCCTAAGGAGCTAAGGACCAGGTTTATTGAGTTATATAATGTTTTTTTTTCAGTTTCTTGTTGAATTTGGTTGTTCACCCTTTTTTTTTTTTGATTTTTTTTTCTTTCTCTTAATTCATCATTTCTAATCATCTTGAAATCTTTGACATGTTTCCCTCCCCTCGTTCTTGTTGGCAGCAGGGAATGTAGGGATGCAGCCAAAAT

Coding sequence (CDS)

ATGGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGACGAGGCTATTAAGAGATTTCTTGTGAGGAATGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAA

Protein sequence

MDHPSIKFFSESSCPKSLLFYSHFCPDEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLCYSLTCSHVVRVRSRTDRRNRQPPQRFIRQSQAPRPVGAGNPARV

Homology

[Close]

BLAST of Sed0009630 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]

BLAST of Sed0009630 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]

BLAST of Sed0009630 vs. NCBI nr
Match: XP_022996709.1 (40S ribosomal protein S26-3-like [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]

BLAST of Sed0009630 vs. NCBI nr
Match: KAG6599946.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030627.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.2 bits (287), Expect = 3.5e-22
Identity = 72/125 (57.60%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------------SQAPRPVGAG 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+                 QAPRPVGAG
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQPGQAPRPVGAG 135

[Close]

BLAST of Sed0009630 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 71/119 (59.66%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRP GAG PARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPAGAGIPARV 129

[Close]

BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-16
Identity = 57/110 (51.82%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFL--- 65
           +K+   S+C K        CP D+AIKRF VRN+VEQAA+RDVQEACV+D  VL  L   
Sbjct: 18  VKYIRCSNCAKC-------CPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAK 77

Query: 66  ---CYSLTC-SHVVRVRSRTDRRNRQPPQRFIRQS---QAPRPVGAGNPA 105
              C S    +H+VRVRSR +RR+R+PP+RF R+    Q PRP G G PA
Sbjct: 78  VHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRREDRPQGPRP-GGGAPA 119

[Close]

BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]

BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]

BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-15
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G PA
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPAQPGQAPRPAG-GAPA 126

[Close]

BLAST of Sed0009630 vs. ExPASy Swiss-Prot
Match: Q56JV1 (40S ribosomal protein S26 OS=Bos taurus OX=9913 GN=RPS26 PE=3 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-10
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 27  DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDR 86
           D+AIK+F++RN+VE AAVRD+ EA V+D  VL      L Y ++C   S VVR RSR  R
Sbjct: 33  DKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREAR 92

Query: 87  RNRQPPQRFIRQSQAPRP 98
           ++R PP RF     APRP
Sbjct: 93  KDRTPPPRFRPAGAAPRP 110

[Close]

BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]

BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]

BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPARV 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+           QAPRPVGAGNPARV
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPVGAGNPARV 129

[Close]

BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A6J1K9H1 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111491873 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.7e-23
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]

BLAST of Sed0009630 vs. ExPASy TrEMBL
Match: A0A6J1FPQ0 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.7e-23
Identity = 72/122 (59.02%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 6   IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CF 65
           +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      
Sbjct: 18  VKFIRCSNCGKC-------CPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAK 77

Query: 66  LCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ-------------SQAPRPVGAGNPA 107
           + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+              QAPRPVGAGNPA
Sbjct: 78  MQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPA 132

[Close]

BLAST of Sed0009630 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]

BLAST of Sed0009630 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 54/98 (55.10%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G  A
Sbjct: 90  TNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPAGPGAAA 127

[Close]

BLAST of Sed0009630 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-16
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 25  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSR 84
           CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSR
Sbjct: 30  CPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSR 89

Query: 85  TDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA 105
           T+RR R PP RF R+           QAPRP G G PA
Sbjct: 90  TNRRVRTPPPRFARRKEDTPKPAQPGQAPRPAG-GAPA 126

The following BLAST results are available for this feature:

BLAST of Sed0009630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146441.1	4.2e-23	61.34	40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S rib...	[more]
XP_022941874.1	1.6e-22	59.02	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S riboso...	[more]
XP_022996709.1	1.6e-22	59.02	40S ribosomal protein S26-3-like [Cucurbita maxima]	[more]
KAG6599946.1	3.5e-22	57.60	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_022943123.1	1.3e-21	59.66	40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso...	[more]

BLAST of Sed0009630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49216	5.2e-16	51.82	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
P49206	2.0e-15	55.10	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	2.0e-15	55.10	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
Q9LYK9	4.4e-15	56.12	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
Q56JV1	5.5e-10	51.28	40S ribosomal protein S26 OS=Bos taurus OX=9913 GN=RPS26 PE=3 SV=3	[more]

BLAST of Sed0009630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIJ0	2.0e-23	61.34	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KM45	2.0e-23	61.34	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1	[more]
A0A1S3C5M1	2.0e-23	61.34	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1	[more]
A0A6J1K9H1	7.7e-23	59.02	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111491873 PE=3 SV=1	[more]
A0A6J1FPQ0	7.7e-23	59.02	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=...	[more]

BLAST of Sed0009630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40510.1	1.4e-16	55.10	Ribosomal protein S26e family protein	[more]
AT2G40590.1	1.4e-16	55.10	Ribosomal protein S26e family protein	[more]
AT3G56340.1	3.1e-16	56.12	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 26..93 e-value: 1.2E-17 score: 64.3
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 24..104
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 15..100 e-value: 2.6E-20 score: 74.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..106
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 24..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009630.1	Sed0009630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005488	binding
molecular_function	GO:0003735	structural constituent of ribosome