Sed0009423 (gene) Chayote v1

Overview
NameSed0009423
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG09: 565505 .. 566674 (-)
RNA-Seq ExpressionSed0009423
SyntenySed0009423
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAACTTAATCTTAATCTCTGCAGCAAGCATGCCCTCATTGATCTTTCAATTTTGGAATCCAAGTTAGTATATATGTTTGCTTTTGGTTTCTTTACCTTTCTTAGCAACTTCTTTTGTTGAAATATCTTGAATTATGTAGTCTGCTTGGTGGGAGTTGGGGCGACGCCCCAAAACCCTAATCAAATTATATAATTGACTTTATACTTTTGTATTGGGATTTTGGACTACATGTTGTATTAGGGTTATACAAGATTTTCTTGAAATTTTTGCCTATTTTCATTAAGTATTTGTATTTTTAATTTTTCTTAATAAAATGGGTTCTCTCTTTTGGCCGTAAACGTAGTTAACACAATGTTTGTGAGCTACGTAAATCATTGTATTTCGTCTTGTGTTTTCTTTAATCTTTAACCTAAGCTTTTCTTTCTAATTTTGGTTTTGTATCATATTGTTTTAGGGGATTGGCAGTGGTTGTCGTTTCATCGTAGATTGTCATTGTTGGTGCCTTTGGAAGAGGAGGATGTTGGCCAAATCGATCCCGAAACATTTGTCTCGGTGGATTCGCAACTGTTCTTACGTGTTCGAATGGAGTTTGATGGTTACTTAGGTGATATCATCAACTCTTCTTTTTCCCCCATCACATTCTACTTGATTGGGAAAAATAAACTTAAGTATTGTTATTTTTTATACAGCTCGTATTACCATTACAAATTCACACGTCAAGTTCAACGAAGGAACAAAGGAGATTATTTTTATGAAAGAGGTACTGTTTTTTGATGTGTGGTTTTGGAAAAGTAGATTTATGGTAAATGCTAAATTAGAAAACTAGTAACAATTCAAAACTTTGCCCTTGTTTAAACATTTACTTGTATGGGGTGGTGATTGATTCTCGAGTTAGATTGAATTATAATAATTCAACCTGTGTTCGAACTATTATTTATTATAATGAATGGGTTATTATTTATTATAATGAATGGGTTATCTCATATGTGGTAATATGTGACTCTCTCAGCCACATAATTTTTCTTTTTACAAATAAAATCATTCTTTTAGAAAAATGTGTGGCTCACAAGATGCAACAAGTATGGATGAGTAGACAAGTTTTTTTAAAGGAAAAAAATAATATGTCCAATATTTTTTTAATTTTCATTCTTTTTAGTTGCAATAA

mRNA sequence

ATGATTAACTTAATCTTAATCTCTGCAGCAAGCATGCCCTCATTGATCTTTCAATTTTGGAATCCAAGGGATTGGCAGTGGTTGTCGTTTCATCGTAGATTGTCATTGTTGGTGCCTTTGGAAGAGGAGGATGTTGGCCAAATCGATCCCGAAACATTTGTCTCGGTGGATTCGCAACTGTTCTTACGTGTTCGAATGGAGTTTGATGGTTACTTAGCTCGTATTACCATTACAAATTCACACGTCAAGTTCAACGAAGGAACAAAGGAGATTATTTTTATGAAAGAGTTGCAATAA

Coding sequence (CDS)

ATGATTAACTTAATCTTAATCTCTGCAGCAAGCATGCCCTCATTGATCTTTCAATTTTGGAATCCAAGGGATTGGCAGTGGTTGTCGTTTCATCGTAGATTGTCATTGTTGGTGCCTTTGGAAGAGGAGGATGTTGGCCAAATCGATCCCGAAACATTTGTCTCGGTGGATTCGCAACTGTTCTTACGTGTTCGAATGGAGTTTGATGGTTACTTAGCTCGTATTACCATTACAAATTCACACGTCAAGTTCAACGAAGGAACAAAGGAGATTATTTTTATGAAAGAGTTGCAATAA

Protein sequence

MINLILISAASMPSLIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDGYLARITITNSHVKFNEGTKEIIFMKELQ
Homology
BLAST of Sed0009423 vs. NCBI nr
Match: XP_023514485.1 (uncharacterized protein LOC111778745 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 11  SMPSLIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDG 70
           S+  ++ QF N R  +     R+LSLL P  E+DVG+ID   FVS+DS++F R+  + + 
Sbjct: 19  SLNQMLLQFHNSRIGE--EQVRQLSLL-PSREKDVGEIDYGIFVSIDSEVFERIATDLND 78

Query: 71  YLARITITNSHVKFNEGTKEIIFMKE 97
             A +T+TNS VKF    KEI  +KE
Sbjct: 79  STALVTLTNSQVKFTMEAKEISLVKE 101

BLAST of Sed0009423 vs. NCBI nr
Match: XP_031744101.1 (uncharacterized protein LOC116404781 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 15  LIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDGYLAR 74
           L+ +F +PR+   L    R+   V   +ED+G ID ETFVS+DSQ F RV      Y  R
Sbjct: 101 LVLKFSSPRNELPLIRKFRMRCAV---KEDMGNIDLETFVSIDSQQFRRVVTGCRDYFVR 160

Query: 75  ITITNSHVKFNEGTKEIIFMKE 97
           +T T+SHV+F+   KE IF +E
Sbjct: 161 VTTTHSHVRFSNEIKEFIFARE 179

BLAST of Sed0009423 vs. NCBI nr
Match: KGN45635.1 (hypothetical protein Csa_005498 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 15  LIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDGYLAR 74
           L+ +F +PR+   L    R+   V   +ED+G ID ETFVS+DSQ F RV      Y  R
Sbjct: 99  LVLKFSSPRNELPLIRKFRMRCAV---KEDMGNIDLETFVSIDSQQFRRVVTGCRDYFVR 158

Query: 75  ITITNSHVKFNEGTKEIIFMKE 97
           +T T+SHV+F+   KE IF +E
Sbjct: 159 VTTTHSHVRFSNEIKEFIFARE 177

BLAST of Sed0009423 vs. NCBI nr
Match: XP_023006014.1 (uncharacterized protein LOC111498891 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-06
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 37  LVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDGYLARITITNSHVKFNEGTKEIIFMKE 96
           L+PLE E + QID  TFVS+DS  F RV +E + Y   +++T+S VKF+  + EI+F KE
Sbjct: 119 LLPLEVEKIEQIDYGTFVSIDSHDFRRVLLELNAYSVHVSVTDSQVKFSTSSDEIVFTKE 178

BLAST of Sed0009423 vs. NCBI nr
Match: XP_038906674.1 (uncharacterized protein LOC120092605 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-06
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 3  NLILISAASMPSLIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFL 62
          +L L     +  L+ +F +P  W  +   R+  ++  + +ED+G ID  TFVS+DS+ F 
Sbjct: 8  SLTLFVLKLVDRLLLKFSSP--WNEIPLIRKFGMMCAV-KEDMGNIDLRTFVSIDSKQFR 67

Query: 63 RVRMEFDGYLARITITNSHVKFNEGTKEIIFMKE 97
           V  E   Y  R+T T SHV+F+   KE IF KE
Sbjct: 68 HVITECRDYFVRVTPTRSHVRFSNEIKEFIFSKE 98

BLAST of Sed0009423 vs. ExPASy TrEMBL
Match: A0A0A0K7E0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 15  LIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDGYLAR 74
           L+ +F +PR+   L    R+   V   +ED+G ID ETFVS+DSQ F RV      Y  R
Sbjct: 99  LVLKFSSPRNELPLIRKFRMRCAV---KEDMGNIDLETFVSIDSQQFRRVVTGCRDYFVR 158

Query: 75  ITITNSHVKFNEGTKEIIFMKE 97
           +T T+SHV+F+   KE IF +E
Sbjct: 159 VTTTHSHVRFSNEIKEFIFARE 177

BLAST of Sed0009423 vs. ExPASy TrEMBL
Match: A0A6J1L0Z0 (uncharacterized protein LOC111498891 OS=Cucurbita maxima OX=3661 GN=LOC111498891 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 37  LVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDGYLARITITNSHVKFNEGTKEIIFMKE 96
           L+PLE E + QID  TFVS+DS  F RV +E + Y   +++T+S VKF+  + EI+F KE
Sbjct: 119 LLPLEVEKIEQIDYGTFVSIDSHDFRRVLLELNAYSVHVSVTDSQVKFSTSSDEIVFTKE 178

BLAST of Sed0009423 vs. ExPASy TrEMBL
Match: A0A6J1KGC4 (uncharacterized protein LOC111494875 OS=Cucurbita maxima OX=3661 GN=LOC111494875 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 11  SMPSLIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDG 70
           S+  ++ QF N R  +     R+LSLL P  E+DVG+ID   FVS+DS++F R+  + + 
Sbjct: 19  SLNQMLLQFHNSRIGE--EQVRQLSLL-PSREKDVGEIDYGIFVSIDSEVFERIATDLND 78

Query: 71  YLARITITNSHVKFNEGTKEIIFMKE 97
             A +T+TNS VKF+   KEI  ++E
Sbjct: 79  SNALVTLTNSQVKFSVEAKEISLVEE 101

BLAST of Sed0009423 vs. ExPASy TrEMBL
Match: A0A0A0KCY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002350 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 0

Query: 4  LILISAASMPSLIFQFWNPR--DWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLF 63
          L L     +  +  QF NPR  D Q + FH     L P  EEDVG+ID   F S+DS + 
Sbjct: 3  LFLHHQQPLNQIFLQFRNPRVVDDQDVLFHG--FPLSPSREEDVGEIDYGIFFSIDSLVL 62

Query: 64 LRVRMEFDGYLARITITNSHVKFNEGTKEIIFMKEL 98
            +  E D Y A +T+TNS VKF+   KEI   KE+
Sbjct: 63 RFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEV 96

BLAST of Sed0009423 vs. ExPASy TrEMBL
Match: A0A6J1HM25 (uncharacterized protein LOC111464210 OS=Cucurbita moschata OX=3662 GN=LOC111464210 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 11  SMPSLIFQFWNPRDWQWLSFHRRLSLLVPLEEEDVGQIDPETFVSVDSQLFLRVRMEFDG 70
           S+  ++ QF N R  +     R+LSLL P  E+DVG+ID   FVS+DS++F R+  + + 
Sbjct: 19  SLNQMLLQFHNSRIGE--EQVRQLSLL-PSREKDVGEIDYGIFVSIDSEVFERIATDLND 78

Query: 71  YLARITITNSHVKFNEGTKEIIFMKE 97
             A +T+TNS VKF+   KEI  ++E
Sbjct: 79  SNALVTLTNSQVKFSVEAKEISLVEE 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023514485.11.5e-0643.02uncharacterized protein LOC111778745 [Cucurbita pepo subsp. pepo][more]
XP_031744101.13.3e-0643.90uncharacterized protein LOC116404781 [Cucumis sativus][more]
KGN45635.13.3e-0643.90hypothetical protein Csa_005498 [Cucumis sativus][more]
XP_023006014.14.3e-0648.33uncharacterized protein LOC111498891 [Cucurbita maxima][more]
XP_038906674.14.3e-0637.23uncharacterized protein LOC120092605 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7E01.6e-0643.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002300 PE=4 SV=1[more]
A0A6J1L0Z02.1e-0648.33uncharacterized protein LOC111498891 OS=Cucurbita maxima OX=3661 GN=LOC111498891... [more]
A0A6J1KGC42.7e-0641.86uncharacterized protein LOC111494875 OS=Cucurbita maxima OX=3661 GN=LOC111494875... [more]
A0A0A0KCY32.7e-0641.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002350 PE=4 SV=1[more]
A0A6J1HM252.7e-0641.86uncharacterized protein LOC111464210 OS=Cucurbita moschata OX=3662 GN=LOC1114642... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009423.1Sed0009423.1mRNA