Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGTAGTTGGAGTCGGCGGCTCTCTTGGGGTTCCCTCATCTGGGATCCCTGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCCGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGTACCTTTTTCGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCAGGGGCCTGAGAGGCGGTGGTTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCATTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAAAGTTAAGGGCGAGGTTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAG
mRNA sequence
ATGGACGGTAGTTGGAGTCGGCGGCTCTCTTGGGGTTCCCTCATCTGGGATCCCTGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCATCGTCTCCACCCCCACCTTAGGATGGCATAGCCTTAAAAAGTTAAGGGCGAGGTTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGAGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAG
Coding sequence (CDS)
ATGGACGGTAGTTGGAGTCGGCGGCTCTCTTGGGGTTCCCTCATCTGGGATCCCTGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCATCGTCTCCACCCCCACCTTAGGATGGCATAGCCTTAAAAAGTTAAGGGCGAGGTTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGAGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAG
Protein sequence
MDGSWSRRLSWGSLIWDPWEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPIVSTPTLGWHSLKKLRARFQTKKGLRWIPRHPETRKGVVSDEMLRESTFQTAAESMGRQETTWRTETS
Homology
BLAST of Sed0008904 vs. NCBI nr
Match:
KAG2241183.1 (hypothetical protein Bca52824_096833 [Brassica carinata])
HSP 1 Score: 134.0 bits (336), Expect = 8.4e-28
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 0
Query: 18 PWEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPIVSTP------------TLGWHSL 77
P EEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRP P TLGWHSL
Sbjct: 135 PGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRTLGWHSL 194
Query: 78 KKLRARFQTKKGLRWIPRHPETRKGVVSDEMLR 99
K++ QT+KGLRWIPRHPETRKGVVSDEMLR
Sbjct: 195 -KVKGEVQTRKGLRWIPRHPETRKGVVSDEMLR 226
BLAST of Sed0008904 vs. NCBI nr
Match:
CAA9893494.1 (unnamed protein product [Spirodela intermedia])
HSP 1 Score: 107.5 bits (267), Expect = 8.4e-20
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 50 MDRPIVSTPTLGWHSLKKLRARFQTKKGLRWIPRHPETRKGVVSDEMLRESTFQTAAESM 109
+D+ + + TLGWHSL + QT+KGLRWIPRHPETRKGV SDEMLRE TF+TAAESM
Sbjct: 3 VDKILPFSSTLGWHSL-NVNGEVQTRKGLRWIPRHPETRKGVASDEMLRELTFRTAAESM 62
Query: 110 GRQETTWRTETS 122
GRQETTWRTETS
Sbjct: 63 GRQETTWRTETS 73
BLAST of Sed0008904 vs. NCBI nr
Match:
KAD3640919.1 (hypothetical protein E3N88_30142 [Mikania micrantha])
HSP 1 Score: 107.5 bits (267), Expect = 8.4e-20
Identity = 68/159 (42.77%), Postives = 72/159 (45.28%), Query Frame = 0
Query: 18 PWEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPIVSTP------------------- 77
P EEDQVGPCEQLDALSPFNPLSE+RQKEGKSMDRP P
Sbjct: 77 PGEEDQVGPCEQLDALSPFNPLSEIRQKEGKSMDRPHHLHPVGTTRLPQGRLRHPGNQSG 136
Query: 78 -----------------------------------------------------------T 99
T
Sbjct: 137 DLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGGSIYDLSFMDVDKIHPFSST 196
BLAST of Sed0008904 vs. NCBI nr
Match:
KAD6795826.1 (hypothetical protein E3N88_06722 [Mikania micrantha])
HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19
Identity = 68/152 (44.74%), Postives = 78/152 (51.32%), Query Frame = 0
Query: 1 MDGSWSRRLSWGS----LIWDPWEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPIVS 60
MD +W+ + GS L EEDQVGPCEQLDALSPFNPLSE+RQK G+ + P S
Sbjct: 1 MDRTWTAVVVGGSPRVPLSRILGEEDQVGPCEQLDALSPFNPLSEIRQK-GRKIHGPTPS 60
Query: 61 TP--------------------------------------------------TLGWHSLK 99
+P TLGWHSL
Sbjct: 61 SPPRRNYEITPRTLSASRGDTKQYDSTQFFRFGGSIYDLSFMDVDKIHPFSSTLGWHSL- 120
BLAST of Sed0008904 vs. NCBI nr
Match:
KAB1201082.1 (hypothetical protein CJ030_MR0G005138 [Morella rubra])
HSP 1 Score: 104.4 bits (259), Expect = 7.2e-19
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 0
Query: 50 MDRPIVSTPTLGWHSLKKLRARFQTKKGLRWIPRHPETRKGVVSDEMLR----------- 109
+D+ + TLGWHSL K++ QT+KGLRWIPRHPETRKGVVSDEMLR
Sbjct: 3 VDKILPFNSTLGWHSL-KVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEISVDPRFP 62
Query: 110 -ESTFQTAAESMGRQETTWRTETS 122
STFQTAAESMGRQETTWRTETS
Sbjct: 63 NRSTFQTAAESMGRQETTWRTETS 85
BLAST of Sed0008904 vs. ExPASy TrEMBL
Match:
A0A5N6MLP8 (Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 4.1e-20
Identity = 68/159 (42.77%), Postives = 72/159 (45.28%), Query Frame = 0
Query: 18 PWEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPIVSTP------------------- 77
P EEDQVGPCEQLDALSPFNPLSE+RQKEGKSMDRP P
Sbjct: 77 PGEEDQVGPCEQLDALSPFNPLSEIRQKEGKSMDRPHHLHPVGTTRLPQGRLRHPGNQSG 136
Query: 78 -----------------------------------------------------------T 99
T
Sbjct: 137 DLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGGSIYDLSFMDVDKIHPFSST 196
BLAST of Sed0008904 vs. ExPASy TrEMBL
Match:
A0A5N6PQS0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_06722 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 68/152 (44.74%), Postives = 78/152 (51.32%), Query Frame = 0
Query: 1 MDGSWSRRLSWGS----LIWDPWEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPIVS 60
MD +W+ + GS L EEDQVGPCEQLDALSPFNPLSE+RQK G+ + P S
Sbjct: 1 MDRTWTAVVVGGSPRVPLSRILGEEDQVGPCEQLDALSPFNPLSEIRQK-GRKIHGPTPS 60
Query: 61 TP--------------------------------------------------TLGWHSLK 99
+P TLGWHSL
Sbjct: 61 SPPRRNYEITPRTLSASRGDTKQYDSTQFFRFGGSIYDLSFMDVDKIHPFSSTLGWHSL- 120
BLAST of Sed0008904 vs. ExPASy TrEMBL
Match:
A0A6A1ULF3 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G005138 PE=4 SV=1)
HSP 1 Score: 104.4 bits (259), Expect = 3.5e-19
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 0
Query: 50 MDRPIVSTPTLGWHSLKKLRARFQTKKGLRWIPRHPETRKGVVSDEMLR----------- 109
+D+ + TLGWHSL K++ QT+KGLRWIPRHPETRKGVVSDEMLR
Sbjct: 3 VDKILPFNSTLGWHSL-KVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEISVDPRFP 62
Query: 110 -ESTFQTAAESMGRQETTWRTETS 122
STFQTAAESMGRQETTWRTETS
Sbjct: 63 NRSTFQTAAESMGRQETTWRTETS 85
BLAST of Sed0008904 vs. ExPASy TrEMBL
Match:
A0A4S8I540 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t17210 PE=4 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0
Query: 50 MDRPIVSTPTLGWHSLKKLRARFQTKKGLRWIPRHPETRKGVVSDEMLR-------ESTF 109
+D+ ++ + TLGWHSL + QT+KGLRWIPRHPETRKGV SDEMLR STF
Sbjct: 3 VDKILLFSSTLGWHSL-NVNGEVQTRKGLRWIPRHPETRKGVASDEMLRGIRRFPNRSTF 62
Query: 110 QTAAESMGRQETTWRTETS 122
+TAAESMGRQETTWRTETS
Sbjct: 63 RTAAESMGRQETTWRTETS 80
BLAST of Sed0008904 vs. ExPASy TrEMBL
Match:
A0A2N9I0I7 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45727 PE=3 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 0
Query: 50 MDRPIVSTPTLGWHSLKKLRARFQTKKGLRWIPRHPETRKGVVSDEMLR----------- 109
+D+ + + TLGWHSL K++ QT+KGLRWIPRHPETRKGVVSDEMLR
Sbjct: 482 VDKILPFSSTLGWHSL-KVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDS 541
Query: 110 --ESTFQTAAESMGRQE-TTWRTETS 122
STF+TAAESMGRQE TTWRTETS
Sbjct: 542 PNRSTFRTAAESMGRQETTTWRTETS 566
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG2241183.1 | 8.4e-28 | 74.19 | hypothetical protein Bca52824_096833 [Brassica carinata] | [more] |
CAA9893494.1 | 8.4e-20 | 73.61 | unnamed protein product [Spirodela intermedia] | [more] |
KAD3640919.1 | 8.4e-20 | 42.77 | hypothetical protein E3N88_30142 [Mikania micrantha] | [more] |
KAD6795826.1 | 3.2e-19 | 44.74 | hypothetical protein E3N88_06722 [Mikania micrantha] | [more] |
KAB1201082.1 | 7.2e-19 | 66.67 | hypothetical protein CJ030_MR0G005138 [Morella rubra] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5N6MLP8 | 4.1e-20 | 42.77 | Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3... | [more] |
A0A5N6PQS0 | 1.6e-19 | 44.74 | Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_06722 PE=4 SV=1 | [more] |
A0A6A1ULF3 | 3.5e-19 | 66.67 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G005138 PE=4 SV=1 | [more] |
A0A4S8I540 | 1.7e-18 | 67.09 | Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t17210 PE=4 SV=... | [more] |
A0A2N9I0I7 | 2.5e-17 | 63.95 | Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45727 PE=3... | [more] |
Match Name | E-value | Identity | Description | |