Sed0008172 (gene) Chayote v1

Overview


Name	Sed0008172
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG14: 2036477 .. 2036713 (+)
RNA-Seq Expression	Sed0008172
Synteny	Sed0008172

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGCCGGAAAGGGTCGTAGTGGTGGCAGTGACAGAGTTGCAAAGGCTGGTGATAGCAGCAGAAGCAAAGATGTCGGTGTCGGTGTCGATGCTGCTCGAAAAGAAGGCGGCAACGGTTCGATGGTTGCACCAGGGAGTGATGGAAAGGAATATATTTCACGAGTTGGATTTGAGAATAATCCAGCAGCTTATTTTGAGGACAAGCGGGCAGCTGACAAAACTGCCAAGTAG

mRNA sequence

ATGGAGGGAGCCGGAAAGGGTCGTAGTGGTGGCAGTGACAGAGTTGCAAAGGCTGGTGATAGCAGCAGAAGCAAAGATGTCGGTGTCGGTGTCGATGCTGCTCGAAAAGAAGGCGGCAACGGTTCGATGGTTGCACCAGGGAGTGATGGAAAGGAATATATTTCACGAGTTGGATTTGAGAATAATCCAGCAGCTTATTTTGAGGACAAGCGGGCAGCTGACAAAACTGCCAAGTAG

Coding sequence (CDS)

ATGGAGGGAGCCGGAAAGGGTCGTAGTGGTGGCAGTGACAGAGTTGCAAAGGCTGGTGATAGCAGCAGAAGCAAAGATGTCGGTGTCGGTGTCGATGCTGCTCGAAAAGAAGGCGGCAACGGTTCGATGGTTGCACCAGGGAGTGATGGAAAGGAATATATTTCACGAGTTGGATTTGAGAATAATCCAGCAGCTTATTTTGAGGACAAGCGGGCAGCTGACAAAACTGCCAAGTAG

Protein sequence

MEGAGKGRSGGSDRVAKAGDSSRSKDVGVGVDAARKEGGNGSMVAPGSDGKEYISRVGFENNPAAYFEDKRAADKTAK

Homology

[Close]

BLAST of Sed0008172 vs. TAIR 10
Match: AT5G61412.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33145.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 7.6e-04
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 5  GKGRSGGSDRVAKAGDSSRSKDVGVGVDAARKEGGNGSMVAPGSDGKEYISRVGFENNPA 64
          G G+SGG+    K+G   +S     G  +     G G+MVAPG++G  YISR GFE+NP 
Sbjct: 9  GGGKSGGAG--GKSGGGGQSSG---GGKSGGGGAGAGNMVAPGTNGGAYISRGGFESNPQ 68

Query: 65 AYFEDKRAADKTAK 79
           YF +   + ++ K
Sbjct: 69 GYFSNLHGSGQSKK 77

The following BLAST results are available for this feature:

BLAST of Sed0008172 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0008172 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0008172 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0008172 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61412.1	7.6e-04	39.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008172.1	Sed0008172.1	mRNA