Sed0007765 (gene) Chayote v1

Overview
NameSed0007765
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLipoxygenase
LocationLG11: 3150945 .. 3151166 (+)
RNA-Seq ExpressionSed0007765
SyntenySed0007765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTGCAATCTGGAGCAAATCTTTGATGGGGAAGTTTTAGATGCATTTTATAGATTCAAGAGAGAATTAAATAAAATTGAAGTCAATATTAAGAGAAGAAACGAAAATCACAATTTGAAAAATCGAGTTGGAGCTGTGAAGATACCATACACTTTGCTACATCCCACCAGCACAAAAGGCATTACATGTAAAGGAATTCCCAATAGCATTTCTATTTGA

mRNA sequence

ATGGACTGCAATCTGGAGCAAATCTTTGATGGGGAAGTTTTAGATGCATTTTATAGATTCAAGAGAGAATTAAATAAAATTGAAGTCAATATTAAGAGAAGAAACGAAAATCACAATTTGAAAAATCGAGTTGGAGCTGTGAAGATACCATACACTTTGCTACATCCCACCAGCACAAAAGGCATTACATGTAAAGGAATTCCCAATAGCATTTCTATTTGA

Coding sequence (CDS)

ATGGACTGCAATCTGGAGCAAATCTTTGATGGGGAAGTTTTAGATGCATTTTATAGATTCAAGAGAGAATTAAATAAAATTGAAGTCAATATTAAGAGAAGAAACGAAAATCACAATTTGAAAAATCGAGTTGGAGCTGTGAAGATACCATACACTTTGCTACATCCCACCAGCACAAAAGGCATTACATGTAAAGGAATTCCCAATAGCATTTCTATTTGA

Protein sequence

MDCNLEQIFDGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPNSISI
Homology
BLAST of Sed0007765 vs. NCBI nr
Match: PRQ42206.1 (putative linoleate 9S-lipoxygenase [Rosa chinensis])

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 4   NLEQIFDGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGIT 63
           +LE   D EVL+AF RF ++L +IE  I+ RN+N+NLKNRVG VK+PYTLL+PTS +G+T
Sbjct: 801 SLEWTTDKEVLEAFGRFGKKLAEIENGIEIRNQNNNLKNRVGPVKMPYTLLYPTSEEGLT 860

Query: 64  CKGIPNSISI 74
            KGIPNSISI
Sbjct: 861 GKGIPNSISI 870

BLAST of Sed0007765 vs. NCBI nr
Match: XP_024189367.2 (probable linoleate 9S-lipoxygenase 5 [Rosa chinensis])

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 4   NLEQIFDGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGIT 63
           +LE   D EVL+AF RF ++L +IE  I+ RN+N+NLKNRVG VK+PYTLL+PTS +G+T
Sbjct: 804 SLEWTTDKEVLEAFGRFGKKLAEIENGIEIRNQNNNLKNRVGPVKMPYTLLYPTSEEGLT 863

Query: 64  CKGIPNSISI 74
            KGIPNSISI
Sbjct: 864 GKGIPNSISI 873

BLAST of Sed0007765 vs. NCBI nr
Match: KAF4368418.1 (hypothetical protein G4B88_025480 [Cannabis sativa])

HSP 1 Score: 84.3 bits (207), Expect = 4.6e-13
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 10   DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
            +G  L AF RF ++L +IE NI RRN + NLKNRVG VK PYTLLHPTS KG+T  GIPN
Sbjct: 1646 EGHSLQAFERFGKKLIQIEDNIMRRNNDVNLKNRVGPVKFPYTLLHPTSEKGVTAMGIPN 1705

Query: 70   SISI 74
            S+SI
Sbjct: 1706 SVSI 1709

BLAST of Sed0007765 vs. NCBI nr
Match: XP_030506245.1 (probable linoleate 9S-lipoxygenase 5 isoform X2 [Cannabis sativa])

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           +G  L AF RF ++L +IE NI RRN + NLKNRVG +K PYTLLHPTS KG+T  GIPN
Sbjct: 739 EGHSLQAFERFGKKLIQIEDNIMRRNNDVNLKNRVGPIKFPYTLLHPTSEKGVTAMGIPN 798

Query: 70  SISI 74
           S+SI
Sbjct: 799 SVSI 802

BLAST of Sed0007765 vs. NCBI nr
Match: XP_030506244.1 (probable linoleate 9S-lipoxygenase 5 isoform X1 [Cannabis sativa])

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           +G  L AF RF ++L +IE NI RRN + NLKNRVG +K PYTLLHPTS KG+T  GIPN
Sbjct: 796 EGHSLQAFERFGKKLIQIEDNIMRRNNDVNLKNRVGPIKFPYTLLHPTSEKGVTAMGIPN 855

Query: 70  SISI 74
           S+SI
Sbjct: 856 SVSI 859

BLAST of Sed0007765 vs. ExPASy Swiss-Prot
Match: O24371 (Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX3.1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           D E+++AFY+F  E+ +IE  I  RN N  LKNR GA  +PY LL P+S  G+TC+G+PN
Sbjct: 851 DAEIVEAFYKFSAEIGRIEKEIDERNANTKLKNRCGAGVLPYELLAPSSGPGVTCRGVPN 910

Query: 70  SISI 74
           S+SI
Sbjct: 911 SVSI 914

BLAST of Sed0007765 vs. ExPASy Swiss-Prot
Match: R9WTS6 (Lipoxygenase 1, chloroplastic OS=Tanacetum cinerariifolium OX=118510 GN=LOX1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.3e-13
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           D E+++AFY F  E+ +IE  I++RN + +LKNR GA  +PY LL P+S  G TC+G+PN
Sbjct: 844 DAEIVEAFYAFSAEIQRIEKEIEKRNSDTSLKNRCGAGVLPYELLAPSSGPGATCRGVPN 903

Query: 70  SISI 74
           SISI
Sbjct: 904 SISI 907

BLAST of Sed0007765 vs. ExPASy Swiss-Prot
Match: P38414 (Linoleate 9S-lipoxygenase OS=Lens culinaris OX=3864 GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 33/59 (55.93%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 15  DAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPNSISI 74
           +AF RF ++L +IE  + +RN + +L+NR G VK+PYTLL+P+S +G+TC+GIPNSISI
Sbjct: 808 EAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI 866

BLAST of Sed0007765 vs. ExPASy Swiss-Prot
Match: P09439 (Seed linoleate 9S-lipoxygenase-2 OS=Glycine max OX=3847 GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           D + L AF +F  +L +IE  + R+N + +L NR+G V++PYTLLHP S +G+TC+GIPN
Sbjct: 803 DSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNS-EGLTCRGIPN 862

Query: 70  SISI 74
           SISI
Sbjct: 863 SISI 865

BLAST of Sed0007765 vs. ExPASy Swiss-Prot
Match: Q9FNX8 (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX4 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-12
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           D E++DAFY F  E+ +IE  I +RN + + +NR GA  +PY L+ P+S  G+TC+G+PN
Sbjct: 863 DAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPN 922

Query: 70  SISI 74
           S+SI
Sbjct: 923 SVSI 926

BLAST of Sed0007765 vs. ExPASy TrEMBL
Match: A0A2P6R6Y4 (Lipoxygenase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0455091 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 4   NLEQIFDGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGIT 63
           +LE   D EVL+AF RF ++L +IE  I+ RN+N+NLKNRVG VK+PYTLL+PTS +G+T
Sbjct: 801 SLEWTTDKEVLEAFGRFGKKLAEIENGIEIRNQNNNLKNRVGPVKMPYTLLYPTSEEGLT 860

Query: 64  CKGIPNSISI 74
            KGIPNSISI
Sbjct: 861 GKGIPNSISI 870

BLAST of Sed0007765 vs. ExPASy TrEMBL
Match: A0A7J6FCS8 (Lipoxygenase OS=Cannabis sativa OX=3483 GN=G4B88_025480 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 10   DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
            +G  L AF RF ++L +IE NI RRN + NLKNRVG VK PYTLLHPTS KG+T  GIPN
Sbjct: 1646 EGHSLQAFERFGKKLIQIEDNIMRRNNDVNLKNRVGPVKFPYTLLHPTSEKGVTAMGIPN 1705

Query: 70   SISI 74
            S+SI
Sbjct: 1706 SVSI 1709

BLAST of Sed0007765 vs. ExPASy TrEMBL
Match: A0A7J6FIJ4 (Lipoxygenase OS=Cannabis sativa OX=3483 GN=F8388_015786 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           +G  L AF RF ++L +IE NI RRN + NLKNRVG +K PYTLLHPTS KG+T  GIPN
Sbjct: 768 EGHSLQAFERFGKKLIQIEDNIMRRNNDVNLKNRVGPIKFPYTLLHPTSEKGVTAMGIPN 827

Query: 70  SISI 74
           S+SI
Sbjct: 828 SVSI 831

BLAST of Sed0007765 vs. ExPASy TrEMBL
Match: A0A7J6E8V3 (Lipoxygenase OS=Cannabis sativa OX=3483 GN=G4B88_009409 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           +G  L AF RF ++L +IE NI RRN + NLKNRVG +K PYTLLHPTS KG+T  GIPN
Sbjct: 768 EGHSLQAFERFGKKLIQIEDNIMRRNNDVNLKNRVGPIKFPYTLLHPTSEKGVTAMGIPN 827

Query: 70  SISI 74
           S+SI
Sbjct: 828 SVSI 831

BLAST of Sed0007765 vs. ExPASy TrEMBL
Match: A0A803PSW5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           +G  L AF RF ++L +IE NI RRN + NLKNRVG +K PYTLLHPTS KG+T  GIPN
Sbjct: 738 EGHSLQAFERFGKKLIQIEDNIMRRNNDVNLKNRVGPIKFPYTLLHPTSEKGVTAMGIPN 797

Query: 70  SISI 74
           S+SI
Sbjct: 798 SVSI 801

BLAST of Sed0007765 vs. TAIR 10
Match: AT1G72520.1 (PLAT/LH2 domain-containing lipoxygenase family protein )

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           D E++DAFY F  E+ +IE  I +RN + + +NR GA  +PY L+ P+S  G+TC+G+PN
Sbjct: 863 DAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPN 922

Query: 70  SISI 74
           S+SI
Sbjct: 923 SVSI 926

BLAST of Sed0007765 vs. TAIR 10
Match: AT1G55020.1 (lipoxygenase 1 )

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-13
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 12  EVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPNSI 71
           E L+AF +F  ++ +IE NI  RN++  LKNR G VK+PYTLL P+S  G+T +GIPNS+
Sbjct: 798 EALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIPNSV 857

Query: 72  SI 74
           SI
Sbjct: 858 SI 859

BLAST of Sed0007765 vs. TAIR 10
Match: AT3G22400.1 (PLAT/LH2 domain-containing lipoxygenase family protein )

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-13
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTK-----GITC 69
           D E L+AF RF +EL  IE NI RRN +   KNR G V IPYTLL+P +T      GIT 
Sbjct: 818 DDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITG 877

Query: 70  KGIPNSISI 74
           KGIPNS+SI
Sbjct: 878 KGIPNSVSI 886

BLAST of Sed0007765 vs. TAIR 10
Match: AT1G17420.1 (lipoxygenase 3 )

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-13
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           D E+++AFY F  E+ +IE  I++RN + + +NR GA  +PY LL P+S  G+TC+G+PN
Sbjct: 856 DAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVPN 915

Query: 70  SISI 74
           S+SI
Sbjct: 916 SVSI 919

BLAST of Sed0007765 vs. TAIR 10
Match: AT1G67560.1 (PLAT/LH2 domain-containing lipoxygenase family protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 10  DGEVLDAFYRFKRELNKIEVNIKRRNENHNLKNRVGAVKIPYTLLHPTSTKGITCKGIPN 69
           D +V+  F +F  EL KIE  I  RN++  LKNR GA   PY LL PTS  G+T +GIPN
Sbjct: 854 DEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPN 913

Query: 70  SISI 74
           SISI
Sbjct: 914 SISI 917

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PRQ42206.15.5e-1464.29putative linoleate 9S-lipoxygenase [Rosa chinensis][more]
XP_024189367.25.5e-1464.29probable linoleate 9S-lipoxygenase 5 [Rosa chinensis][more]
KAF4368418.14.6e-1365.63hypothetical protein G4B88_025480 [Cannabis sativa][more]
XP_030506245.16.0e-1364.06probable linoleate 9S-lipoxygenase 5 isoform X2 [Cannabis sativa][more]
XP_030506244.16.0e-1364.06probable linoleate 9S-lipoxygenase 5 isoform X1 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
O243711.7e-1353.13Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LO... [more]
R9WTS66.3e-1353.13Lipoxygenase 1, chloroplastic OS=Tanacetum cinerariifolium OX=118510 GN=LOX1 PE=... [more]
P384141.8e-1255.93Linoleate 9S-lipoxygenase OS=Lens culinaris OX=3864 GN=LOX1.1 PE=2 SV=1[more]
P094391.8e-1253.13Seed linoleate 9S-lipoxygenase-2 OS=Glycine max OX=3847 GN=LOX1.2 PE=2 SV=1[more]
Q9FNX83.1e-1248.44Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A2P6R6Y42.6e-1464.29Lipoxygenase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0455091 PE=3 SV=1[more]
A0A7J6FCS82.2e-1365.63Lipoxygenase OS=Cannabis sativa OX=3483 GN=G4B88_025480 PE=3 SV=1[more]
A0A7J6FIJ42.9e-1364.06Lipoxygenase OS=Cannabis sativa OX=3483 GN=F8388_015786 PE=3 SV=1[more]
A0A7J6E8V32.9e-1364.06Lipoxygenase OS=Cannabis sativa OX=3483 GN=G4B88_009409 PE=3 SV=1[more]
A0A803PSW52.9e-1364.06Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G72520.12.2e-1348.44PLAT/LH2 domain-containing lipoxygenase family protein [more]
AT1G55020.12.9e-1354.84lipoxygenase 1 [more]
AT3G22400.12.9e-1357.97PLAT/LH2 domain-containing lipoxygenase family protein [more]
AT1G17420.14.9e-1348.44lipoxygenase 3 [more]
AT1G67560.12.7e-1154.69PLAT/LH2 domain-containing lipoxygenase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.245.10coord: 2..72
e-value: 4.4E-19
score: 70.7
NoneNo IPR availablePANTHERPTHR11771:SF126LINOLEATE 9S-LIPOXYGENASE 1coord: 9..73
IPR013819Lipoxygenase, C-terminalPFAMPF00305Lipoxygenasecoord: 10..56
e-value: 2.7E-12
score: 46.0
IPR013819Lipoxygenase, C-terminalPROSITEPS51393LIPOXYGENASE_3coord: 1..73
score: 25.16209
IPR000907LipoxygenasePANTHERPTHR11771LIPOXYGENASEcoord: 9..73
IPR036226Lipoxigenase, C-terminal domain superfamilySUPERFAMILY48484Lipoxigenasecoord: 8..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007765.1Sed0007765.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0031408 oxylipin biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen