Sed0007403 (gene) Chayote v1

Overview
NameSed0007403
Typegene
OrganismSechium edule (Chayote v1)
DescriptionZinc finger, FYVE/PHD-type
LocationLG04: 2855176 .. 2856617 (+)
RNA-Seq ExpressionSed0007403
SyntenySed0007403
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAGATTGTCTTCTTTGTTCGCAAACCCTAATTTTTAATTTCTCTGCAACTTTTCCCAAACCCTAAAATCCTTCAAAACCTTCAAAAACCCCTTTTTTTTCATTCACCATCGAATCTGAATCTCTTCGATTCTTATCCGTTTAGGGTTTTCTGTGTTTCCCTTTTTCAATGAATGCGCGCCCTAATCTTCCTCCTCCGCCGCCGTCGTCGATTCCGCCGACGAGCAAATCGCCGACGGAATGTTGCAATTGCGGCAATCACAATTGCTGGGTTCTGCACAATATCCGTTTGCGAGCCGCCAATCGCCGCCTCTGCACATCGTGCGTTCTTCGTCTTCATCCTGCTTCGTTTTGCCCTTCTTGTTTTCAGTTTTACGATCCCTCTGTTTCTCCTCACCCTTCCAATCGCTTAGCTTGTGTTAAGTGTTCTTCCATTACGCATTCCCACTGTGTGGTCAACTCTGCTAGTTCTTCTTCTTCTTCTTCCGATCCTCAGATGTTGTCTTCCTCTTATCTCTGCCCTCCCTGCGCCAATCCCAATTTCTGCTTCTTCGAATTGGACTCCGGTCCTCGGGGTTCTACTGTGACTGTTGATAGGAAGATTTCTGTTGTGTTGCTCTGTGCGGCGAAGATTGCTTCTGCGTCGATGGCGAAGGCGCTGGCTCTGGCGCGGGCGGATGCCGATAGGAAGGTTCGGGAGGCGGCCGTGGCGAAGAAGAGGGCTAGAGAAGCTATTGAGCATGTTGGGTTTGTGATGGCTAGAGAAAGGGCTAGGCGTATGGAGGAGGAGGCGGCGGCTATGGAGGTTTCGGGTTCTGGGAGTGTTGGGGTTAAGGAGAATGAGAGGAATAGGAATGTGGGTTCTATGGTGAAAGTTGAGAATTCTGTTGAGGCCCCTGTTGTGCCATGTTTAAATGCTGGTTGTAGTAGTAGTGGGTTGTCTCAGAGAAGGGAGAGCTTGAATGGGTTTGTGAGACAGATTTCTATGGTGAAGAATGAGGGAGCTGTTTCCATGGAAGAAGATGTGAGGCAGAAAAATGTTGAGGCTGATCGGTTACAGAGGAACAATAACATTGCTGATAATGGGAATGACAATGGGGAAGTTGAGAATGTGCAAAATGATCATATTGGAGGAAATGTTAATACCACAAGTTAGCTTTTTGAAGTTGTTCTCATGGCATCATTATATCCTTGGTCTTTTGCTAAATGAAAAGTATGGAAATTTATTCAGTTATTTTTCTTGGTCTTTAGGAATTAATTCATGTTGTGAGGATAGCACAATGCCTGTGAGTTTTTCCAGATATTCCTTGTTGAGATTTGGCTAGTTTAGAGTTTATCCGAATTCTCATTTTAAGGTCCTTGCATGGTGTAATGGTGTAAAAAATGTAGATTAATTGAAGTTTAACATTATTTTGTGTACCTGTCACACTGTTACTTTGCAC

mRNA sequence

ATTAGATTGTCTTCTTTGTTCGCAAACCCTAATTTTTAATTTCTCTGCAACTTTTCCCAAACCCTAAAATCCTTCAAAACCTTCAAAAACCCCTTTTTTTTCATTCACCATCGAATCTGAATCTCTTCGATTCTTATCCGTTTAGGGTTTTCTGTGTTTCCCTTTTTCAATGAATGCGCGCCCTAATCTTCCTCCTCCGCCGCCGTCGTCGATTCCGCCGACGAGCAAATCGCCGACGGAATGTTGCAATTGCGGCAATCACAATTGCTGGGTTCTGCACAATATCCGTTTGCGAGCCGCCAATCGCCGCCTCTGCACATCGTGCGTTCTTCGTCTTCATCCTGCTTCGTTTTGCCCTTCTTGTTTTCAGTTTTACGATCCCTCTGTTTCTCCTCACCCTTCCAATCGCTTAGCTTGTGTTAAGTGTTCTTCCATTACGCATTCCCACTGTGTGGTCAACTCTGCTAGTTCTTCTTCTTCTTCTTCCGATCCTCAGATGTTGTCTTCCTCTTATCTCTGCCCTCCCTGCGCCAATCCCAATTTCTGCTTCTTCGAATTGGACTCCGGTCCTCGGGGTTCTACTGTGACTGTTGATAGGAAGATTTCTGTTGTGTTGCTCTGTGCGGCGAAGATTGCTTCTGCGTCGATGGCGAAGGCGCTGGCTCTGGCGCGGGCGGATGCCGATAGGAAGGTTCGGGAGGCGGCCGTGGCGAAGAAGAGGGCTAGAGAAGCTATTGAGCATGTTGGGTTTGTGATGGCTAGAGAAAGGGCTAGGCGTATGGAGGAGGAGGCGGCGGCTATGGAGGTTTCGGGTTCTGGGAGTGTTGGGGTTAAGGAGAATGAGAGGAATAGGAATGTGGGTTCTATGGTGAAAGTTGAGAATTCTGTTGAGGCCCCTGTTGTGCCATGTTTAAATGCTGGTTGTAGTAGTAGTGGGTTGTCTCAGAGAAGGGAGAGCTTGAATGGGTTTGTGAGACAGATTTCTATGGTGAAGAATGAGGGAGCTGTTTCCATGGAAGAAGATGTGAGGCAGAAAAATGTTGAGGCTGATCGGTTACAGAGGAACAATAACATTGCTGATAATGGGAATGACAATGGGGAAGTTGAGAATGTGCAAAATGATCATATTGGAGGAAATGTTAATACCACAAGTTAGCTTTTTGAAGTTGTTCTCATGGCATCATTATATCCTTGGTCTTTTGCTAAATGAAAAGTATGGAAATTTATTCAGTTATTTTTCTTGGTCTTTAGGAATTAATTCATGTTGTGAGGATAGCACAATGCCTGTGAGTTTTTCCAGATATTCCTTGTTGAGATTTGGCTAGTTTAGAGTTTATCCGAATTCTCATTTTAAGGTCCTTGCATGGTGTAATGGTGTAAAAAATGTAGATTAATTGAAGTTTAACATTATTTTGTGTACCTGTCACACTGTTACTTTGCAC

Coding sequence (CDS)

ATGAATGCGCGCCCTAATCTTCCTCCTCCGCCGCCGTCGTCGATTCCGCCGACGAGCAAATCGCCGACGGAATGTTGCAATTGCGGCAATCACAATTGCTGGGTTCTGCACAATATCCGTTTGCGAGCCGCCAATCGCCGCCTCTGCACATCGTGCGTTCTTCGTCTTCATCCTGCTTCGTTTTGCCCTTCTTGTTTTCAGTTTTACGATCCCTCTGTTTCTCCTCACCCTTCCAATCGCTTAGCTTGTGTTAAGTGTTCTTCCATTACGCATTCCCACTGTGTGGTCAACTCTGCTAGTTCTTCTTCTTCTTCTTCCGATCCTCAGATGTTGTCTTCCTCTTATCTCTGCCCTCCCTGCGCCAATCCCAATTTCTGCTTCTTCGAATTGGACTCCGGTCCTCGGGGTTCTACTGTGACTGTTGATAGGAAGATTTCTGTTGTGTTGCTCTGTGCGGCGAAGATTGCTTCTGCGTCGATGGCGAAGGCGCTGGCTCTGGCGCGGGCGGATGCCGATAGGAAGGTTCGGGAGGCGGCCGTGGCGAAGAAGAGGGCTAGAGAAGCTATTGAGCATGTTGGGTTTGTGATGGCTAGAGAAAGGGCTAGGCGTATGGAGGAGGAGGCGGCGGCTATGGAGGTTTCGGGTTCTGGGAGTGTTGGGGTTAAGGAGAATGAGAGGAATAGGAATGTGGGTTCTATGGTGAAAGTTGAGAATTCTGTTGAGGCCCCTGTTGTGCCATGTTTAAATGCTGGTTGTAGTAGTAGTGGGTTGTCTCAGAGAAGGGAGAGCTTGAATGGGTTTGTGAGACAGATTTCTATGGTGAAGAATGAGGGAGCTGTTTCCATGGAAGAAGATGTGAGGCAGAAAAATGTTGAGGCTGATCGGTTACAGAGGAACAATAACATTGCTGATAATGGGAATGACAATGGGGAAGTTGAGAATGTGCAAAATGATCATATTGGAGGAAATGTTAATACCACAAGTTAG

Protein sequence

MNARPNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPSCFQFYDPSVSPHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQMLSSSYLCPPCANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAVAKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSVEAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVEADRLQRNNNIADNGNDNGEVENVQNDHIGGNVNTTS
Homology
BLAST of Sed0007403 vs. NCBI nr
Match: XP_038878318.1 (uncharacterized protein LOC120070585 [Benincasa hispida])

HSP 1 Score: 406.4 bits (1043), Expect = 2.4e-109
Identity = 232/333 (69.67%), Postives = 265/333 (79.58%), Query Frame = 0

Query: 5   PNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPS 64
           P+LPPPP +  PPT K   EC NCG+   W+LH++R+R  NRRLCTSCVLRLHP+SFCPS
Sbjct: 4   PHLPPPPSTPNPPT-KMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPS 63

Query: 65  CFQFYDPSVSPHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQMLS---SSYLCPPCA 124
           CFQFYD SVSPHP NR  C KCSSITHSHCVVN A       DPQ+LS   SSYLCPPCA
Sbjct: 64  CFQFYDLSVSPHPVNRFTCSKCSSITHSHCVVNPA-----CPDPQLLSSTTSSYLCPPCA 123

Query: 125 NPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAVA 184
            PNF FF+LDS PR S  ++DRK +VVLLCAAKIASASM KA+ +ARADA+RKVREAA+A
Sbjct: 124 KPNFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMA 183

Query: 185 KKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSVE 244
           +KRAREA+EHVGF++ARERARR EE  A+MEVSGSG++ +KENERNRN+GSMVKVEN  E
Sbjct: 184 RKRAREALEHVGFLLARERARRKEE--ASMEVSGSGNLVMKENERNRNLGSMVKVENPFE 243

Query: 245 APVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVEADRLQRNNN 304
            P V  LN   + S L+QRRESLNGFVRQ+SMVKNE A SMEE VRQKNVEADRLQ NNN
Sbjct: 244 VPAVSTLNN--TGSALTQRRESLNGFVRQMSMVKNEVAASMEEAVRQKNVEADRLQSNNN 303

Query: 305 I-------ADNGNDNGEVENVQNDHIGGNVNTT 328
           I       + N N+NGEVE+VQ+D IGG VNTT
Sbjct: 304 IGLNEKEKSGNENENGEVEHVQHDRIGGIVNTT 326

BLAST of Sed0007403 vs. NCBI nr
Match: XP_022155464.1 (uncharacterized protein LOC111022599 [Momordica charantia])

HSP 1 Score: 399.1 bits (1024), Expect = 3.8e-107
Identity = 227/344 (65.99%), Postives = 266/344 (77.33%), Query Frame = 0

Query: 8   PPPPPSSIP---------PTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHP 67
           PPPPPS +P         P +K P+EC NCG+ + W+LH++RLR  NRRLCTSCVLRLHP
Sbjct: 6   PPPPPSVVPAMVNNPNPNPPTKMPSECGNCGSQSRWMLHHVRLRGVNRRLCTSCVLRLHP 65

Query: 68  ASFCPSCFQFYDPSVSPH--PSNRLACVKCSSITHSHCVVNSASSSSSSSDPQML---SS 127
            SFCPSCFQFYDPS SPH  PSNR  CVKCSSI+HSHCV+     S SSSDP  L   SS
Sbjct: 66  TSFCPSCFQFYDPSASPHPQPSNRFTCVKCSSISHSHCVL-----SPSSSDPHPLSSSSS 125

Query: 128 SYLCPPCANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADR 187
           SYLCPPCA PNF FF+LDS PR S  ++DRK++VVLLCAAKIASASM KA+ +ARADA+R
Sbjct: 126 SYLCPPCAKPNFSFFDLDSKPRISDKSIDRKMAVVLLCAAKIASASMGKAVIVARADAER 185

Query: 188 KVREAAVAKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSM 247
           KVREAA+A+KRAREA+EHVGFV+ARERARR EE  A++EVSGSGS+G+KE ERNRN+GSM
Sbjct: 186 KVREAAIARKRAREALEHVGFVVARERARRKEE--ASVEVSGSGSIGIKEKERNRNLGSM 245

Query: 248 VKVENSVEAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVEA 307
           VK+ENS E   V   N   +SS L+ RRESLNGFVRQ+SMVKN+ A S+EE +RQKNVEA
Sbjct: 246 VKMENSCEGSAVANSN---TSSALTHRRESLNGFVRQMSMVKNDVAASLEEALRQKNVEA 305

Query: 308 DRLQRNN-----------NIADNGNDNGEVENVQNDHIGGNVNT 327
           DRLQ +N           N  D+G++NGEV+ V ND IGGNVNT
Sbjct: 306 DRLQSSNNNTLNEKEKSGNFGDSGHENGEVKRVHNDQIGGNVNT 339

BLAST of Sed0007403 vs. NCBI nr
Match: XP_011659447.1 (uncharacterized protein LOC105436183 [Cucumis sativus] >KGN65987.1 hypothetical protein Csa_007541 [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 6.5e-107
Identity = 228/332 (68.67%), Postives = 259/332 (78.01%), Query Frame = 0

Query: 5   PNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPS 64
           P LPPPP +  PPT K   EC NCG+   W+LH++R+R  NRRLCTSCVLRLHP+SFCPS
Sbjct: 4   PPLPPPPSTPNPPT-KMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPS 63

Query: 65  CFQFYDPSVSPHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQML----SSSYLCPPC 124
           CFQFYD SVSPHPSNR  C KCSSITHSHCVVN A       DPQ+L    SSSYLCPPC
Sbjct: 64  CFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPA-----CPDPQLLSSTTSSSYLCPPC 123

Query: 125 ANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAV 184
           A PNF FF+ DS PR S  ++DRK +VVLLCAAKIASASMAKA+ +ARADA+RKVREAA+
Sbjct: 124 AKPNFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAM 183

Query: 185 AKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSV 244
           A+KRAREA+EHVGFV+ARERARR EE  A++EVSGSG++GVKE ERNR +G  VK EN+ 
Sbjct: 184 ARKRAREALEHVGFVVARERARRKEE--ASVEVSGSGNLGVKEKERNRTLGPTVKAENAF 243

Query: 245 EAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVE-ADRLQRN 304
           E P V  LN G   S L+QRRESLNGFVRQ+SMVKNE A SMEE  R KNVE A+RLQ N
Sbjct: 244 EMPAVSTLNTG---SALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSN 303

Query: 305 NNIA----DNGNDNGEVENVQNDHIGGNVNTT 328
           NNI        N+NGEVE+V+NDHIGG VNTT
Sbjct: 304 NNIGLLNEKEKNENGEVEHVKNDHIGGTVNTT 324

BLAST of Sed0007403 vs. NCBI nr
Match: XP_008450515.1 (PREDICTED: uncharacterized protein LOC103492096 [Cucumis melo] >KAA0050965.1 putative DNA binding protein [Cucumis melo var. makuwa] >TYK10311.1 putative DNA binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.1 bits (1019), Expect = 1.4e-106
Identity = 226/332 (68.07%), Postives = 259/332 (78.01%), Query Frame = 0

Query: 5   PNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPS 64
           P+LPPPP +  PPT K   EC NCG+   W+LH++R+R  NRRLCTSCVLRLHP+SFCPS
Sbjct: 4   PHLPPPPSTPNPPT-KMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPS 63

Query: 65  CFQFYDPSVSPHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQML----SSSYLCPPC 124
           CFQFYD SVSPHPSNR  C KCSSITHSHCVVN A       DPQ+L    SSSYLCPPC
Sbjct: 64  CFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPA-----CPDPQLLSSTSSSSYLCPPC 123

Query: 125 ANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAV 184
           A PNF FF+LDS PR S  ++DRK +VVLLCAAKIAS SM KA  +ARADA+RKVREAA+
Sbjct: 124 AKPNFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASTSMGKAAIVARADAERKVREAAM 183

Query: 185 AKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSV 244
           A+KRAREA+EHVGFV+ARERARR EE  A++EVSGSG++G+KE ERNRN+G  VK EN+ 
Sbjct: 184 ARKRAREALEHVGFVLARERARRKEE--ASVEVSGSGNLGMKEKERNRNLGPTVKAENAF 243

Query: 245 EAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVE-ADRLQRN 304
           E P V  LN G   + L+QRRESLNGFVRQ+SMVKNE A SMEE  R KNVE A+RLQ N
Sbjct: 244 EIPAVSTLNTG---TALTQRRESLNGFVRQMSMVKNEVAASMEESARHKNVEVAERLQSN 303

Query: 305 NNIA----DNGNDNGEVENVQNDHIGGNVNTT 328
           NNI        N+NGEVE+V+NDHIGG VNTT
Sbjct: 304 NNIGLLNEKEKNENGEVEHVKNDHIGGTVNTT 324

BLAST of Sed0007403 vs. NCBI nr
Match: KAG7024046.1 (hypothetical protein SDJN02_15075, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.5 bits (1007), Expect = 3.6e-105
Identity = 220/318 (69.18%), Postives = 253/318 (79.56%), Query Frame = 0

Query: 5   PNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPS 64
           P+LPPPPP      +K  TEC NCG+H  W+LH++RLR  NRRLCTSCVLRLHP SFCPS
Sbjct: 4   PHLPPPPP------TKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPS 63

Query: 65  CFQFYDPSVS-PHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQMLSS--SYLCPPCA 124
           CF FYDP+VS PHPSNRL C+KCSSITHSHCV+N A     SSDP +LSS  SYLCPPCA
Sbjct: 64  CFHFYDPAVSPPHPSNRLTCLKCSSITHSHCVLNPA-----SSDPHLLSSSTSYLCPPCA 123

Query: 125 NPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAVA 184
            PNF FF+LDS PR S  ++DRK +VVLLCAAKIASASM KA+ +ARADA+RKVRE AVA
Sbjct: 124 KPNFSFFDLDSLPRNSHKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREVAVA 183

Query: 185 KKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSVE 244
           +KRAREA+EHVGF++ARERARR EE  A+MEVSGSG++  K+ ERNRN+GSMVK ENS+E
Sbjct: 184 RKRAREALEHVGFLLARERARRKEE--ASMEVSGSGNMETKDKERNRNLGSMVKTENSLE 243

Query: 245 APVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVEADRLQRNNN 304
            P VP LN G +   L+QRRESLNGFVRQ+SMVKNE A S++E       EADRLQ NNN
Sbjct: 244 TPAVPTLNTGTT---LTQRRESLNGFVRQMSMVKNEAAASVQE-----TAEADRLQSNNN 296

Query: 305 IADNGNDNGEVENVQNDH 320
           IA    DNG+VENVQNDH
Sbjct: 304 IA----DNGDVENVQNDH 296

BLAST of Sed0007403 vs. ExPASy TrEMBL
Match: A0A6J1DQC5 (uncharacterized protein LOC111022599 OS=Momordica charantia OX=3673 GN=LOC111022599 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.8e-107
Identity = 227/344 (65.99%), Postives = 266/344 (77.33%), Query Frame = 0

Query: 8   PPPPPSSIP---------PTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHP 67
           PPPPPS +P         P +K P+EC NCG+ + W+LH++RLR  NRRLCTSCVLRLHP
Sbjct: 6   PPPPPSVVPAMVNNPNPNPPTKMPSECGNCGSQSRWMLHHVRLRGVNRRLCTSCVLRLHP 65

Query: 68  ASFCPSCFQFYDPSVSPH--PSNRLACVKCSSITHSHCVVNSASSSSSSSDPQML---SS 127
            SFCPSCFQFYDPS SPH  PSNR  CVKCSSI+HSHCV+     S SSSDP  L   SS
Sbjct: 66  TSFCPSCFQFYDPSASPHPQPSNRFTCVKCSSISHSHCVL-----SPSSSDPHPLSSSSS 125

Query: 128 SYLCPPCANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADR 187
           SYLCPPCA PNF FF+LDS PR S  ++DRK++VVLLCAAKIASASM KA+ +ARADA+R
Sbjct: 126 SYLCPPCAKPNFSFFDLDSKPRISDKSIDRKMAVVLLCAAKIASASMGKAVIVARADAER 185

Query: 188 KVREAAVAKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSM 247
           KVREAA+A+KRAREA+EHVGFV+ARERARR EE  A++EVSGSGS+G+KE ERNRN+GSM
Sbjct: 186 KVREAAIARKRAREALEHVGFVVARERARRKEE--ASVEVSGSGSIGIKEKERNRNLGSM 245

Query: 248 VKVENSVEAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVEA 307
           VK+ENS E   V   N   +SS L+ RRESLNGFVRQ+SMVKN+ A S+EE +RQKNVEA
Sbjct: 246 VKMENSCEGSAVANSN---TSSALTHRRESLNGFVRQMSMVKNDVAASLEEALRQKNVEA 305

Query: 308 DRLQRNN-----------NIADNGNDNGEVENVQNDHIGGNVNT 327
           DRLQ +N           N  D+G++NGEV+ V ND IGGNVNT
Sbjct: 306 DRLQSSNNNTLNEKEKSGNFGDSGHENGEVKRVHNDQIGGNVNT 339

BLAST of Sed0007403 vs. ExPASy TrEMBL
Match: A0A0A0LYS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560710 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 3.1e-107
Identity = 228/332 (68.67%), Postives = 259/332 (78.01%), Query Frame = 0

Query: 5   PNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPS 64
           P LPPPP +  PPT K   EC NCG+   W+LH++R+R  NRRLCTSCVLRLHP+SFCPS
Sbjct: 4   PPLPPPPSTPNPPT-KMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPS 63

Query: 65  CFQFYDPSVSPHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQML----SSSYLCPPC 124
           CFQFYD SVSPHPSNR  C KCSSITHSHCVVN A       DPQ+L    SSSYLCPPC
Sbjct: 64  CFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPA-----CPDPQLLSSTTSSSYLCPPC 123

Query: 125 ANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAV 184
           A PNF FF+ DS PR S  ++DRK +VVLLCAAKIASASMAKA+ +ARADA+RKVREAA+
Sbjct: 124 AKPNFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAM 183

Query: 185 AKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSV 244
           A+KRAREA+EHVGFV+ARERARR EE  A++EVSGSG++GVKE ERNR +G  VK EN+ 
Sbjct: 184 ARKRAREALEHVGFVVARERARRKEE--ASVEVSGSGNLGVKEKERNRTLGPTVKAENAF 243

Query: 245 EAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVE-ADRLQRN 304
           E P V  LN G   S L+QRRESLNGFVRQ+SMVKNE A SMEE  R KNVE A+RLQ N
Sbjct: 244 EMPAVSTLNTG---SALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSN 303

Query: 305 NNIA----DNGNDNGEVENVQNDHIGGNVNTT 328
           NNI        N+NGEVE+V+NDHIGG VNTT
Sbjct: 304 NNIGLLNEKEKNENGEVEHVKNDHIGGTVNTT 324

BLAST of Sed0007403 vs. ExPASy TrEMBL
Match: A0A5D3CEV9 (Putative DNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004650 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 7.0e-107
Identity = 226/332 (68.07%), Postives = 259/332 (78.01%), Query Frame = 0

Query: 5   PNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPS 64
           P+LPPPP +  PPT K   EC NCG+   W+LH++R+R  NRRLCTSCVLRLHP+SFCPS
Sbjct: 4   PHLPPPPSTPNPPT-KMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPS 63

Query: 65  CFQFYDPSVSPHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQML----SSSYLCPPC 124
           CFQFYD SVSPHPSNR  C KCSSITHSHCVVN A       DPQ+L    SSSYLCPPC
Sbjct: 64  CFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPA-----CPDPQLLSSTSSSSYLCPPC 123

Query: 125 ANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAV 184
           A PNF FF+LDS PR S  ++DRK +VVLLCAAKIAS SM KA  +ARADA+RKVREAA+
Sbjct: 124 AKPNFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASTSMGKAAIVARADAERKVREAAM 183

Query: 185 AKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSV 244
           A+KRAREA+EHVGFV+ARERARR EE  A++EVSGSG++G+KE ERNRN+G  VK EN+ 
Sbjct: 184 ARKRAREALEHVGFVLARERARRKEE--ASVEVSGSGNLGMKEKERNRNLGPTVKAENAF 243

Query: 245 EAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVE-ADRLQRN 304
           E P V  LN G   + L+QRRESLNGFVRQ+SMVKNE A SMEE  R KNVE A+RLQ N
Sbjct: 244 EIPAVSTLNTG---TALTQRRESLNGFVRQMSMVKNEVAASMEESARHKNVEVAERLQSN 303

Query: 305 NNIA----DNGNDNGEVENVQNDHIGGNVNTT 328
           NNI        N+NGEVE+V+NDHIGG VNTT
Sbjct: 304 NNIGLLNEKEKNENGEVEHVKNDHIGGTVNTT 324

BLAST of Sed0007403 vs. ExPASy TrEMBL
Match: A0A1S3BQ20 (uncharacterized protein LOC103492096 OS=Cucumis melo OX=3656 GN=LOC103492096 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 7.0e-107
Identity = 226/332 (68.07%), Postives = 259/332 (78.01%), Query Frame = 0

Query: 5   PNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPS 64
           P+LPPPP +  PPT K   EC NCG+   W+LH++R+R  NRRLCTSCVLRLHP+SFCPS
Sbjct: 4   PHLPPPPSTPNPPT-KMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPS 63

Query: 65  CFQFYDPSVSPHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQML----SSSYLCPPC 124
           CFQFYD SVSPHPSNR  C KCSSITHSHCVVN A       DPQ+L    SSSYLCPPC
Sbjct: 64  CFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPA-----CPDPQLLSSTSSSSYLCPPC 123

Query: 125 ANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAV 184
           A PNF FF+LDS PR S  ++DRK +VVLLCAAKIAS SM KA  +ARADA+RKVREAA+
Sbjct: 124 AKPNFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASTSMGKAAIVARADAERKVREAAM 183

Query: 185 AKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENSV 244
           A+KRAREA+EHVGFV+ARERARR EE  A++EVSGSG++G+KE ERNRN+G  VK EN+ 
Sbjct: 184 ARKRAREALEHVGFVLARERARRKEE--ASVEVSGSGNLGMKEKERNRNLGPTVKAENAF 243

Query: 245 EAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVSMEEDVRQKNVE-ADRLQRN 304
           E P V  LN G   + L+QRRESLNGFVRQ+SMVKNE A SMEE  R KNVE A+RLQ N
Sbjct: 244 EIPAVSTLNTG---TALTQRRESLNGFVRQMSMVKNEVAASMEESARHKNVEVAERLQSN 303

Query: 305 NNIA----DNGNDNGEVENVQNDHIGGNVNTT 328
           NNI        N+NGEVE+V+NDHIGG VNTT
Sbjct: 304 NNIGLLNEKEKNENGEVEHVKNDHIGGTVNTT 324

BLAST of Sed0007403 vs. ExPASy TrEMBL
Match: A0A2P5A8B4 (Zinc finger, FYVE/PHD-type OS=Trema orientale OX=63057 GN=TorRG33x02_355940 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.3e-51
Identity = 116/229 (50.66%), Postives = 169/229 (73.80%), Query Frame = 0

Query: 2   NARPNLPPPPPSSIPPTSKSPTECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASF 61
           N  P+L P P ++   T+ S  EC NCG+   WVLH++R+R  +RRLCTSCVLRLHP+SF
Sbjct: 8   NPNPSLSPSPYNNARLTAPSSGECGNCGSQKRWVLHHVRIRGIHRRLCTSCVLRLHPSSF 67

Query: 62  CPSCFQFYDPSVS-PHPSNRLACVKCSSITHSHCVVNSASSSSSSSDPQMLSSSYLCPPC 121
           CP+CFQFYD + + P  S RL C KCSS THSHC       SSSSS     +S+YLCPPC
Sbjct: 68  CPTCFQFYDSNNNVPPSSKRLTCSKCSSFTHSHCAPTPQPPSSSSS-----ASAYLCPPC 127

Query: 122 ANPNFCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAV 181
           A+P+F FF++DS P  +   +D++++++LLCAAKI++ASM+KA+ LAR +A+R+VREAA+
Sbjct: 128 ASPSFVFFDIDSDPNRA---IDKRLALILLCAAKISAASMSKAVILARGEAERRVREAAL 187

Query: 182 AKKRAREAIEHVGFVMARERARRMEEEAA--AMEVSGSGSVGVKENERN 228
           A+KRAREA++++  +++    + + ++AA  + EVSGSG+VG ++ E++
Sbjct: 188 ARKRAREALDNLAVLVSGRGDKAVRKDAAEGSAEVSGSGNVGSRQKEKS 228

BLAST of Sed0007403 vs. TAIR 10
Match: AT1G09520.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 142.9 bits (359), Expect = 4.6e-34
Identity = 108/282 (38.30%), Postives = 147/282 (52.13%), Query Frame = 0

Query: 12  PSSIPPTSKSPT---------ECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFC 71
           PSS   TS S T          C +CG+ + WV+H +RLRA+ R  CT C+LR HPASFC
Sbjct: 4   PSSTTATSTSATSDAAANSTERCDDCGSSDAWVIHTVRLRASLRFFCTHCLLRNHPASFC 63

Query: 72  PSCFQFYDPSVSPHPSNRLAC-VK-CSSITHSHCVVNSASSSSSSSDPQMLSSSYLCPPC 131
           P CF  YD   SP    R++C +K C S+TH HC          + D   L  SYLCPPC
Sbjct: 64  PGCFALYDS--SPPSFRRVSCSIKGCHSLTHIHC----------AGDESHL--SYLCPPC 123

Query: 132 ANPN-FCFFELDSGPRGSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAA 191
            +PN F FF       GS   VD+ +S   LCAAKIA++SM KA+  A+ + DR+ +EAA
Sbjct: 124 RDPNSFSFFRPIVDENGSRF-VDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAA 183

Query: 192 VAKKRAREAIEHVGFVMARERARRMEEEAAAMEVSGSGSVGVKENERNRNVGSMVKVENS 251
           +AKKRAREA+E V  + A+E+AR +  +     V     +    N      G+ VK   S
Sbjct: 184 LAKKRAREALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASN------GATVKETES 243

Query: 252 VEAPVVPCLNAGCSSSGLSQRRESLNGFVRQISMVKNEGAVS 282
            +    P      ++ G  ++  +      Q++ VK E   S
Sbjct: 244 SDTTTTPTTTTTKNNGGTEKQNPA-----TQLAKVKQEADAS 259

BLAST of Sed0007403 vs. TAIR 10
Match: AT3G17460.1 (PHD finger family protein )

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-18
Identity = 70/195 (35.90%), Postives = 106/195 (54.36%), Query Frame = 0

Query: 24  ECCNCGNHNCWVLHNIRLRAANRRLCTSCVLRLHPASFCPSCFQFYDPSVSPHPSNRLAC 83
           EC  C       +H +    A RRLCT C+L+ +   FC  CF  +D +V P    R+ C
Sbjct: 9   ECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDNAVPPQA--RIIC 68

Query: 84  VKCSSITHSHCVV----NSASSSSSSSDPQMLSSSYLCPPCANPNFCFFEL----DSGPR 143
           V C S TH  C      +SA+SSSSS+ P   +SS+ C PC+NPNF FF      +  P 
Sbjct: 69  VNCPSSTHLSCSTQPPSSSAASSSSSAPPP--ASSFTCQPCSNPNFTFFPKSRVNEDVPD 128

Query: 144 GSTVTVDRKISVVLLCAAKIASASMAKALALARADADRKVREAAVAKKRAREAIEHVGFV 203
            + +T   K ++ L+ A  I+ A+M KA+AL + +A +K+  A  AK RA+ A+ ++  +
Sbjct: 129 ETPLT--PKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGALTNLQDI 188

Query: 204 MARE---RARRMEEE 208
           + R+     +R E+E
Sbjct: 189 VIRQSKVTGKRKEDE 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038878318.12.4e-10969.67uncharacterized protein LOC120070585 [Benincasa hispida][more]
XP_022155464.13.8e-10765.99uncharacterized protein LOC111022599 [Momordica charantia][more]
XP_011659447.16.5e-10768.67uncharacterized protein LOC105436183 [Cucumis sativus] >KGN65987.1 hypothetical ... [more]
XP_008450515.11.4e-10668.07PREDICTED: uncharacterized protein LOC103492096 [Cucumis melo] >KAA0050965.1 put... [more]
KAG7024046.13.6e-10569.18hypothetical protein SDJN02_15075, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DQC51.8e-10765.99uncharacterized protein LOC111022599 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A0A0LYS33.1e-10768.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560710 PE=4 SV=1[more]
A0A5D3CEV97.0e-10768.07Putative DNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BQ207.0e-10768.07uncharacterized protein LOC103492096 OS=Cucumis melo OX=3656 GN=LOC103492096 PE=... [more]
A0A2P5A8B49.3e-5150.66Zinc finger, FYVE/PHD-type OS=Trema orientale OX=63057 GN=TorRG33x02_355940 PE=4... [more]
Match NameE-valueIdentityDescription
AT1G09520.14.6e-3438.30LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12... [more]
AT3G17460.12.7e-1835.90PHD finger family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 279..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..328
NoneNo IPR availablePANTHERPTHR34451PHD FINGER FAMILY PROTEINcoord: 1..273
NoneNo IPR availablePANTHERPTHR34451:SF15DNA-BINDING PROTEINcoord: 1..273
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 49..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007403.1Sed0007403.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding