Sed0007102 (gene) Chayote v1

Overview
NameSed0007102
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG12: 31469408 .. 31469902 (-)
RNA-Seq ExpressionSed0007102
SyntenySed0007102
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCATTTCTCTTTACCAACTTTATATTCCCCATTAATAATTCCCATCTCCCTTCGATTATGAAATTTTCTTATTTCTTTTTCTTATCTTGAAATCTTTTTGCACATAGTAAAATATTTAAAATGAGAAAAGAAAAGAGAAAGGGGCTGCCGGAGGACGGCGGCGGAATTTGTGAAAAGAAGGCTAAAAAGGATAAGACGACGGCGGAGGAGCCGACCGACGCGGAGGTGGAGGAGTTCTACGTCATACTCCGGCGGATGAAGCAAGCGGCGGAGTATTTTGGCGTGAAAAAGGGGATGCTAACGAGGAAATACATAAGAGCGGCGGTTGCCACGGCGGCGATACAAAATGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACGGCGGTGGTGGTGAAGATCGATGAGGCGGCGCCGGCGGTGGTGAAGAAAAATGGGTTGCGGTTGGATTTGAATATTGCGGCGGCGGTGGAGAGCGATGGCCGGTGA

mRNA sequence

TTTTCATTTCTCTTTACCAACTTTATATTCCCCATTAATAATTCCCATCTCCCTTCGATTATGAAATTTTCTTATTTCTTTTTCTTATCTTGAAATCTTTTTGCACATAGTAAAATATTTAAAATGAGAAAAGAAAAGAGAAAGGGGCTGCCGGAGGACGGCGGCGGAATTTGTGAAAAGAAGGCTAAAAAGGATAAGACGACGGCGGAGGAGCCGACCGACGCGGAGGTGGAGGAGTTCTACGTCATACTCCGGCGGATGAAGCAAGCGGCGGAGTATTTTGGCGTGAAAAAGGGGATGCTAACGAGGAAATACATAAGAGCGGCGGTTGCCACGGCGGCGATACAAAATGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACGGCGGTGGTGGTGAAGATCGATGAGGCGGCGCCGGCGGTGGTGAAGAAAAATGGGTTGCGGTTGGATTTGAATATTGCGGCGGCGGTGGAGAGCGATGGCCGGTGA

Coding sequence (CDS)

ATGAGAAAAGAAAAGAGAAAGGGGCTGCCGGAGGACGGCGGCGGAATTTGTGAAAAGAAGGCTAAAAAGGATAAGACGACGGCGGAGGAGCCGACCGACGCGGAGGTGGAGGAGTTCTACGTCATACTCCGGCGGATGAAGCAAGCGGCGGAGTATTTTGGCGTGAAAAAGGGGATGCTAACGAGGAAATACATAAGAGCGGCGGTTGCCACGGCGGCGATACAAAATGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACGGCGGTGGTGGTGAAGATCGATGAGGCGGCGCCGGCGGTGGTGAAGAAAAATGGGTTGCGGTTGGATTTGAATATTGCGGCGGCGGTGGAGAGCGATGGCCGGTGA

Protein sequence

MRKEKRKGLPEDGGGICEKKAKKDKTTAEEPTDAEVEEFYVILRRMKQAAEYFGVKKGMLTRKYIRAAVATAAIQNEKEEEEEEEEEETAVVVKIDEAAPAVVKKNGLRLDLNIAAAVESDGR
Homology
BLAST of Sed0007102 vs. NCBI nr
Match: KAG6589551.1 (hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 77/130 (59.23%), Postives = 89/130 (68.46%), Query Frame = 0

Query: 1   MRKEKRKGLPEDGGGICEKKAKKDKTTA---EEPTDAEVEEFYVILRRMKQAAEYFGVKK 60
           M + KRK   E+ G  CEKK K D+TTA   +EPTD EVEEFY ILRRMK+AAEYFGV+K
Sbjct: 1   MVRGKRKCQSENDGKFCEKKTKNDETTAAAEKEPTDEEVEEFYSILRRMKRAAEYFGVEK 60

Query: 61  GMLTRKYIRAAVATAAIQNEKEEEE---EEEEEETAVV-VKIDEAAPAVVKKNGLRLDLN 120
           GMLT K +R   A AA + EKEEE+   +  E ET V  +K       VV +NGLRLDLN
Sbjct: 61  GMLT-KSLRDVAAAAADREEKEEEKKGVKRAEAETDVARMKQGGKGKEVVAENGLRLDLN 120

Query: 121 IAAAVESDGR 124
           IA AVESDGR
Sbjct: 121 IAVAVESDGR 129

BLAST of Sed0007102 vs. NCBI nr
Match: KAE8652459.1 (hypothetical protein Csa_013196 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 75/132 (56.82%), Postives = 88/132 (66.67%), Query Frame = 0

Query: 1   MRKEKRKGLPEDGGGICEKKAKKDKT---TAEEPTDAEVEEFYVILRRMKQAAEYFGVKK 60
           M KEKRK   E+   I EKK K D T    AEEPTD EVEEFY+ILRRMKQ AEYFGV++
Sbjct: 1   MGKEKRKRQMENRAEIHEKKTKNDDTPTPAAEEPTDEEVEEFYMILRRMKQMAEYFGVER 60

Query: 61  GMLTRKYIRAAVATAAIQNEKEEEEEEEEEETAVV------VKIDEAAPAVVKKNGLRLD 120
           GML  K + A VA AA Q EK+EEEEEE++  ++       V        VV++NGLRLD
Sbjct: 61  GMLA-KSLSAVVAAAADQQEKKEEEEEEKKGLSMAAPSPAEVSRRGKGKEVVEENGLRLD 120

Query: 121 LNIAAAV-ESDG 123
           LNIA AV +SDG
Sbjct: 121 LNIALAVQQSDG 131

BLAST of Sed0007102 vs. NCBI nr
Match: KAA0058070.1 (hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0

Query: 1   MRKEKRKGLPEDGGGICEKKAKKDKTT----AEEPTDAEVEEFYVILRRMKQAAEYFGVK 60
           M KEKRK   E    I EKK + D +T    AEEPTD EVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGMLTRKYIRAAVATAAIQNEKEEEEEEEEEETAVVVKIDEAA---PAVVKKNGLR-LDL 120
           +GMLT K + A VA AA Q EK+EEE+          + ++       VV++NGLR LDL
Sbjct: 61  RGMLT-KSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAAAVESDG 123
           NIA AV+SDG
Sbjct: 121 NIAVAVQSDG 129

BLAST of Sed0007102 vs. NCBI nr
Match: TYK28420.1 (hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0

Query: 1   MRKEKRKGLPEDGGGICEKKAKKDKTT----AEEPTDAEVEEFYVILRRMKQAAEYFGVK 60
           M KEKRK   E    I EKK + D +T    AEEPTD EVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGMLTRKYIRAAVATAAIQNEKEEEEEEEEEETAVVVKIDEAA---PAVVKKNGLR-LDL 120
           +GMLT K + A VA AA Q EK+EEE+          + ++       VV++NGLR LDL
Sbjct: 61  RGMLT-KSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAAAVESDG 123
           NIA AV+SDG
Sbjct: 121 NIAVAVQSDG 129

BLAST of Sed0007102 vs. ExPASy TrEMBL
Match: A0A5D3DYW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00500 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0

Query: 1   MRKEKRKGLPEDGGGICEKKAKKDKTT----AEEPTDAEVEEFYVILRRMKQAAEYFGVK 60
           M KEKRK   E    I EKK + D +T    AEEPTD EVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGMLTRKYIRAAVATAAIQNEKEEEEEEEEEETAVVVKIDEAA---PAVVKKNGLR-LDL 120
           +GMLT K + A VA AA Q EK+EEE+          + ++       VV++NGLR LDL
Sbjct: 61  RGMLT-KSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAAAVESDG 123
           NIA AV+SDG
Sbjct: 121 NIAVAVQSDG 129

BLAST of Sed0007102 vs. ExPASy TrEMBL
Match: A0A5A7USD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003770 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0

Query: 1   MRKEKRKGLPEDGGGICEKKAKKDKTT----AEEPTDAEVEEFYVILRRMKQAAEYFGVK 60
           M KEKRK   E    I EKK + D +T    AEEPTD EVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGMLTRKYIRAAVATAAIQNEKEEEEEEEEEETAVVVKIDEAA---PAVVKKNGLR-LDL 120
           +GMLT K + A VA AA Q EK+EEE+          + ++       VV++NGLR LDL
Sbjct: 61  RGMLT-KSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLDL 120

Query: 121 NIAAAVESDG 123
           NIA AV+SDG
Sbjct: 121 NIAVAVQSDG 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589551.11.3e-2059.23hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652459.11.6e-1856.82hypothetical protein Csa_013196 [Cucumis sativus][more]
KAA0058070.12.6e-1654.62hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa][more]
TYK28420.12.6e-1654.62hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DYW71.3e-1654.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7USD11.3e-1654.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
IPR034577Protein NIM1-INTERACTING 2PANTHERPTHR35735PROTEIN NIM1-INTERACTING 2coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007102.1Sed0007102.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010112 regulation of systemic acquired resistance