Sed0006832 (gene) Chayote v1

Overview


Name	Sed0006832
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein DCL homolog, chloroplastic
Location	LG13: 22454561 .. 22458776 (+)
RNA-Seq Expression	Sed0006832
Synteny	Sed0006832

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGGATTGAAGAGAAAATCTTGCAGAATCTCCAAAATCCAAAATCCATGAGAGATTGATGATAATATGAGTGACAGTTAACTGTTCTTCTTCTTCTTCCAATTTCTCTGAAAAAATTTGCAGAAAATCATGCTCAGAAATCGCAGCCTACAATCTCATTCTCAATAGTTCCAAATCCAAGCTCAAGGGCATGGCCATGGCCATGGCGTCCGTTCTGAAGCCACCGCCATTTGTGCCCTATCACTCCCCAAATCCAAGCTTCTTCAACTCGTCGTCGCTGATCTTATGTTTTCCTGCTATGAATTCGTTTCACCCGTCCATTCGTGCCCTGAGGACTGGCCCTGATGGCACTCGAATTCGGAGCCTCGAAGAATATAGCTCCGATTTGCTGCGGAAACCGGTTGTTCCGCCGGCGAAGGATTTGGCCGGATTATCGGAGGTTGAGGAGAGTGGAAATGACGATGACGGCGAGGAAGAGGATTGGGTTGATTGGGAGGACAAGATTTTGGAGGATACTGTTCCGCTTGTTGGCTTTGTTAGGATGATTCTTCACTCTGATAAGTAAGCTTTCATTCGTTTCCGTTTATGCTCTATAACTGAATTTTTTAGCTTCTTCATTGTTAAATAGAAATTATGCTGCCCTGTTGTTGCTGTTATGTGATGTTTGAGATTGTTTTGGCTCTAATGGAAACCTTGTTACTTGATAACGAACAGAACTATGTAGCTTGTGATTGAAATTCTAGAATTTTGAGGGAACTTTCTTCAATTTCCATGCCAGGCAAGAACAGTAGTCAAGGGTCCTGGCAATTACTCTCTTAAAAGTTCATTGATTTTAGAATCAATTTTTTCGAATTTTATTGACTTGACGTACCTAAAGACTCTTCATCCAATAAATTGAAACAAAAAGACTCTTGCAACAGTACATACTCAACCTATGGCCCTTGGCATATGGATATTACTTAAATTACTCACAGTATGATATGAATGAAAGGGGGTTTTGCGATAAGAATGGTTAACTTAAGATGAGTCCTTTATCAATATGGAGCCTTATTTGTTCCTTATCCAAAAAGAACTATTGAGGTTTATGATAGGACTTATATGGGGAGGGTATAGTAGTAATTAGATTAGGAGTTTGTTAGGCATTTTGAATTCAACACATGAGGGGTTTCAAACCTGTAGCCTCTTATTACTAGGCCGTACATGATGCCACTGTAGTTATGCTCCTTTTGGTGTTTTTTAAGCTTTTTGATTATAAAGAGAGGGTGTGGGCAGTGAGGATAGAGTATCAAATATTTTGGCAGACTCTTCTTTCTTTGACCATTTTTTTTCATTTCAATTGAAACAATTTGAGAAGCGAATTGAAATGGTTGAAATTTTTTTGCAACTCTCCCATTGCATCTAACTTCTTGACCACGATCGACTAATGGCCAGAACTTAGCTCTAATACCAATTGATAGACCCAGTACCAAAATAGTCAAAATATTTGATATTTCTCCTCATTGCTCACATCCTCTATTTATATTATAAATGCCTAACAGTCCCCGAGTGGTGACACAGTGGTTGAAGACTTAGGCTTTGAAGGTATGTTCTCTTCAAGGTCCCAGGTTCGAGACTCACCTGTGATATTACTCTTTCGATATCTCCTGGTGCCTAGTTTAGGGACGGGCGTGTTGTTTCAAAAAAAAAATTTAAATGCCTAACAAACTCTGAATCTTATTACTACTACCTCCAATCTATCCTATCAGCTTATTCGTTAGTTTACTCAATATATATTCTATCCTACTTTTCATATATTTCATCGATCAGGTATTCGTAACATGTATGCTGTTAGTTATCTTCGAGTAAGAGTTTCAAGTTGCTATCATTTCAGCATATCTCCTTACAGACAAAAAAAAAACATTTTGTAGTTGTTTGTCTTCTCTAGGACGTCTGAGGTATCTTGACTGTGTGTTTTGATTGTGTAAATGTCAACTAATGGAGCACCTATGGTTATTATCGAAGAGACTATGTTGTATTTCAAATTCATTAGCATGATGAGGTAGAGTTTAATTTCTATTTGTTAATCATCTTTAATCAAACATGTGCAGATATGGAAGTGGGGATAGGTTAAGCCCAGAGCACGAGAAAACAATTCTTGACAGGTTGCTTCCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGGTATGTCTCTCTTCATATGTGTTATGCCTCATGGTTTTTAGCCTGTTTTTAGAATTTAAATGTGCATAAAAAAGAACTAATTAAATACTCTAGCCTTTTTTTCTGTTTCGTTGAATGAAAGAAAGTTTTTGTGATGAACCTGGTAAAGGAATTAAACGTTCACAATCTAAGTTTATTTTGTTTTTTATTTGTTTGTTTTTTTAACTACTTCTGATGAAACATTTAGCTTGTAGTTATTGATGAGATTGACTTCAATTAGTCATTAATGATCACTGAAACATTTGACTAGCTTGTAATCTTAAAGGGTTCATTAAGTAACTAAGAGATGATTAATTCAATCCATGATGACCACCTACCTAGGAATTAATTTCCTACGAGTTTCCTAGACATGCAAATGTTGTAGGATCAGGTGGTAATGTATGCCCCATGACCTCGACGTGTAAGCTGGCATGCCCAATCATAAATATCATAAAAGAAAACTTAAAAGGATGCATTTGAGGCAACAGTTGAGTTATGTTATTATAAACCGTGGATTATTATAATAGAAGAGATTATGATGGCATGTATTTGAGGTGCAAATTATTAGAATAGGAATCATGATAACTTGGATTGGTGGTGCATATTATTATAACAAGGCTAGGGGTTAATACAGTTGGGATGGTGAGTTATGGACTAACCTGCTGGTCGCCCATGTTCAATTTATTATAACCTAACTTTACCCACACTTAAACGCCCCAAAATATGTGTCTATAATGTTTGACTTGAAAAGATATGAATAGTTGCGGAACAGAAAGCTTTTGTGGTGACCTCAATAAATACTCTTGATCTATATTAACTGTGTAGATTATTGGTAAAAAAAAACGAATCTCTTTTTTGTGATTTAATTGAAGACACTTCACGTTCCCAATGTGCATAGTGAATTTCGGGCCTAACCCAACGCTGGCCCAAACATTGGTTATTATTTGTTGAAAGTTTGAAACATTGTATCATTCACTTGATTGTATATTTGTGATGCTGGCAAAAGGGTGTTATACCTTGACTTGACTCCAAGATCTTGCTATCAAAAAAATGATTTTGTCTCTTGTTTTAGGAAATTGGAAAGCAGGAAAAACTTAGGCATGTTGATAGCCATTTGATTTTTTGTTTTTGGTTTTTGAAACTTAAGCGTATTTTTACTCAAATTCCTATCATGTATTCCATTTTTTCCTAAGAAAGTAGGTCAATATTAACCAAATTTTAAAAACCAATACAAAATTTTAGAAGCTACTTTTTTTGTTTTCAAATTTTAGTTTAGTTTTCAACAACATAGATTAGAAGACGTAGATATACAAGTAAGAAAAAATATATAGTAAAGTAGTTGTAGGCTTAAATTTCAAAAACAAAAAACAAAAAATAAAATTGTTATCAAACGGGCCTTAATCAATGTGCAGTTGCATTTTCACTTTTGAACCATTTTCTTTGAAATCATTTTGATCAGTGGATACTGTCTTTGTCAACTTAAAAGATCATAGCAATGATGTATTGGTGTTGTTGTGGTTGGCAGGTGGGATATCATCCTGATTTTGAAAGCTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAATTAGTTGATTTTTCATATTGGAAGTGCATCAAGGGTCTGATCAGAAAGAACTATCCTCTTCATGCAGAAAGCTTCATTCTTAGACATTTTCGGAAGCGTAGAAACAATTTTCGCCGGTAACGCGTGCAAGATCGGTTAATCATACTATTGTATCATTCTATTTCAGGAACTTCTTGAATAACAAAGCTTGAAATTAACCTACCAAGCTTGTGTGGTTCTCTTGCGTGTAATGATTTGAAATGTGCGATTAAATATGGATATAGGGTGAATGTATTAGATTTTTGCTTGAGGAAAGTGCTAGTAAAATTCAATTTTGTAAATCCTAATAGTACCTCTGGATTTCTTTAATCCATTTTTACAATCTAAATTATGGCTTAAGGTTTGGTTAGGGGTGTTAATTGATCGGTG

mRNA sequence

TACGGATTGAAGAGAAAATCTTGCAGAATCTCCAAAATCCAAAATCCATGAGAGATTGATGATAATATGAGTGACAGTTAACTGTTCTTCTTCTTCTTCCAATTTCTCTGAAAAAATTTGCAGAAAATCATGCTCAGAAATCGCAGCCTACAATCTCATTCTCAATAGTTCCAAATCCAAGCTCAAGGGCATGGCCATGGCCATGGCGTCCGTTCTGAAGCCACCGCCATTTGTGCCCTATCACTCCCCAAATCCAAGCTTCTTCAACTCGTCGTCGCTGATCTTATGTTTTCCTGCTATGAATTCGTTTCACCCGTCCATTCGTGCCCTGAGGACTGGCCCTGATGGCACTCGAATTCGGAGCCTCGAAGAATATAGCTCCGATTTGCTGCGGAAACCGGTTGTTCCGCCGGCGAAGGATTTGGCCGGATTATCGGAGGTTGAGGAGAGTGGAAATGACGATGACGGCGAGGAAGAGGATTGGGTTGATTGGGAGGACAAGATTTTGGAGGATACTGTTCCGCTTGTTGGCTTTGTTAGGATGATTCTTCACTCTGATAAATATGGAAGTGGGGATAGGTTAAGCCCAGAGCACGAGAAAACAATTCTTGACAGGTTGCTTCCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGGTGGGATATCATCCTGATTTTGAAAGCTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAATTAGTTGATTTTTCATATTGGAAGTGCATCAAGGGTCTGATCAGAAAGAACTATCCTCTTCATGCAGAAAGCTTCATTCTTAGACATTTTCGGAAGCGTAGAAACAATTTTCGCCGGTAACGCGTGCAAGATCGGTTAATCATACTATTGTATCATTCTATTTCAGGAACTTCTTGAATAACAAAGCTTGAAATTAACCTACCAAGCTTGTGTGGTTCTCTTGCGTGTAATGATTTGAAATGTGCGATTAAATATGGATATAGGGTGAATGTATTAGATTTTTGCTTGAGGAAAGTGCTAGTAAAATTCAATTTTGTAAATCCTAATAGTACCTCTGGATTTCTTTAATCCATTTTTACAATCTAAATTATGGCTTAAGGTTTGGTTAGGGGTGTTAATTGATCGGTG

Coding sequence (CDS)

ATGGCCATGGCCATGGCGTCCGTTCTGAAGCCACCGCCATTTGTGCCCTATCACTCCCCAAATCCAAGCTTCTTCAACTCGTCGTCGCTGATCTTATGTTTTCCTGCTATGAATTCGTTTCACCCGTCCATTCGTGCCCTGAGGACTGGCCCTGATGGCACTCGAATTCGGAGCCTCGAAGAATATAGCTCCGATTTGCTGCGGAAACCGGTTGTTCCGCCGGCGAAGGATTTGGCCGGATTATCGGAGGTTGAGGAGAGTGGAAATGACGATGACGGCGAGGAAGAGGATTGGGTTGATTGGGAGGACAAGATTTTGGAGGATACTGTTCCGCTTGTTGGCTTTGTTAGGATGATTCTTCACTCTGATAAATATGGAAGTGGGGATAGGTTAAGCCCAGAGCACGAGAAAACAATTCTTGACAGGTTGCTTCCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGGTGGGATATCATCCTGATTTTGAAAGCTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAATTAGTTGATTTTTCATATTGGAAGTGCATCAAGGGTCTGATCAGAAAGAACTATCCTCTTCATGCAGAAAGCTTCATTCTTAGACATTTTCGGAAGCGTAGAAACAATTTTCGCCGGTAA

Protein sequence

MAMAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPAMNSFHPSIRALRTGPDGTRIRSLEEYSSDLLRKPVVPPAKDLAGLSEVEESGNDDDGEEEDWVDWEDKILEDTVPLVGFVRMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR

Homology

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BLAST of Sed0006832 vs. NCBI nr
Match: XP_038897137.1 (protein DCL homolog, chloroplastic [Benincasa hispida])

HSP 1 Score: 394.4 bits (1012), Expect = 6.3e-106
Identity = 194/228 (85.09%), Postives = 206/228 (90.35%), Query Frame = 0


Query: 1   MAMAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRS 60
           M MAMAS+LKPPPFVP HS NP+FFNSS +ILCFP   M SFH S RAL+TGP+G+RIRS
Sbjct: 1   MLMAMASILKPPPFVPSHSLNPNFFNSSPVILCFPTQPMTSFHLSTRALKTGPEGSRIRS 60

Query: 61  LEEYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVG 120
            EEYSSDLLRKPVVPPA+DLA LSE     EESGNDD+ EEEDWVDWEDKILEDTVPLVG
Sbjct: 61  HEEYSSDLLRKPVVPPARDLARLSEDDDSSEESGNDDE-EEEDWVDWEDKILEDTVPLVG 120

Query: 121 FVRMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRC 180
           FVRM+LHS KYGSGDRL+PEHEKTILDRLLPYHPE EKKIGCGIDYIT+GYHPDFESSRC
Sbjct: 121 FVRMVLHSGKYGSGDRLNPEHEKTILDRLLPYHPESEKKIGCGIDYITIGYHPDFESSRC 180

Query: 181 LFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR 223
           LFIVRKDGELVDFSYWKCIKGLIRK YPLHAESFILRHFR+RR NFRR
Sbjct: 181 LFIVRKDGELVDFSYWKCIKGLIRKKYPLHAESFILRHFRRRRRNFRR 227

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BLAST of Sed0006832 vs. NCBI nr
Match: XP_022133006.1 (protein DCL homolog, chloroplastic [Momordica charantia])

HSP 1 Score: 387.1 bits (993), Expect = 1.0e-103
Identity = 190/225 (84.44%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFP--AMNSFHPSIRALRTGPDGTRIRSLE 62
           MAMASV KPPPF P+HS NPSF NSS +ILCFP   M S HPSIRAL+TGP+G+RIRS E
Sbjct: 1   MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPMHPMTSLHPSIRALKTGPEGSRIRSHE 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPVVPPAKD A +SE     EESG D + EEEDWVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGE-EEEDWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LHS KYGSGDRLS EHEKTILDRLLPYHPECEKKIGCGIDYIT+GYHPDFESSRCLF
Sbjct: 121 RMVLHSGKYGSGDRLSLEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFR 222
           IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFR+RR N+R
Sbjct: 181 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRRRRRNYR 224

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BLAST of Sed0006832 vs. NCBI nr
Match: XP_008452556.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 3.1e-100
Identity = 185/226 (81.86%), Postives = 201/226 (88.94%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRSLE 62
           MAMAS+L   PF P+HS NP+FFNSS LILCFP   +NSFHPS RAL+TGP+G+RIRS +
Sbjct: 1   MAMASILTLLPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGSRIRSHQ 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPVVPPAKDLAG SE     EESGND++ EE DWVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVVPPAKDLAGPSEDDDSSEESGNDEE-EEVDWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LH+ KY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYITVGYHPDFESSRCLF
Sbjct: 121 RMVLHTGKYESGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR 223
           IVRKDGELVDFSYWKCIKGLIRKNYPL+AESFILRHFR+RR N RR
Sbjct: 181 IVRKDGELVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRNLRR 225

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BLAST of Sed0006832 vs. NCBI nr
Match: KAA0064386.1 (protein DCL [Cucumis melo var. makuwa] >TYK20201.1 protein DCL [Cucumis melo var. makuwa])

HSP 1 Score: 375.6 bits (963), Expect = 3.1e-100
Identity = 185/226 (81.86%), Postives = 201/226 (88.94%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRSLE 62
           MAMAS+L   PF P+HS NP+FFNSS LILCFP   +NSFHPS RAL+TGP+G+RIRS +
Sbjct: 1   MAMASILTLLPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGSRIRSHQ 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPVVPPAKDLAG SE     EESGND++ EE DWVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVVPPAKDLAGPSEDDDSSEESGNDEE-EEVDWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LH+ KY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYITVGYHPDFESSRCLF
Sbjct: 121 RMVLHTGKYESGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR 223
           IVRKDGELVDFSYWKCIKGLIRKNYPL+AESFILRHFR+RR N RR
Sbjct: 181 IVRKDGELVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRNLRR 225

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BLAST of Sed0006832 vs. NCBI nr
Match: XP_004141259.1 (protein DCL homolog, chloroplastic [Cucumis sativus] >KGN55194.1 hypothetical protein Csa_011993 [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 8.9e-100
Identity = 182/226 (80.53%), Postives = 201/226 (88.94%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRSLE 62
           MAMAS+LKPPPF P+HS NP+FFNSS LILCFP   +NSFHPS RAL+TGP+G R+RS +
Sbjct: 1   MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRLRSHQ 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPV P AKDLAG SE     EESGN+D+ EE +WVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVGPSAKDLAGPSEDDDSSEESGNEDE-EEVEWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LH+ KY +GDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYITVGYHPDFESSRCLF
Sbjct: 121 RMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR 223
           IVRKDGE+VDFSYWKCIKGLIRKNYPL+AESFILRHFR+RR N RR
Sbjct: 181 IVRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRNSRR 225

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BLAST of Sed0006832 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.1e-72
Identity = 138/222 (62.16%), Postives = 165/222 (74.32%), Query Frame = 0


Query: 3   MAMASVLKPPPFV-PYHSPNPSFFNSSSLILC--FPA--MNSFHPSIRALRTGPDGTRIR 62
           M++AS+    P   PY       F+ SS  LC  FP     S  P +RALRT  DG +I 
Sbjct: 1   MSLASIPSSSPVASPYFRCRTYIFSFSSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIG 60

Query: 63  SLEEYSSDLLRKPVVPPAKDLAGLSEVEESGNDDDGEEEDWVDWEDKILEDTVPLVGFVR 122
           + E Y S+LLR+P +   +     SE EE   +++ E +++VDWEDKILE TVPLVGFVR
Sbjct: 61  NSESYGSELLRRPRIASEES----SEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVR 120

Query: 123 MILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLFI 182
           MILHS KY + DRLSPEHE+TI++ LLPYHPECEKKIGCGIDYI VG+HPDFESSRC+FI
Sbjct: 121 MILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFI 180

Query: 183 VRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNN 220
           VRKDGE+VDFSYWKCIKGLI+K YPL+A+SFILRHFRKRR N
Sbjct: 181 VRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218

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BLAST of Sed0006832 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 9.3e-68
Identity = 126/180 (70.00%), Postives = 147/180 (81.67%), Query Frame = 0


Query: 46  ALRTGPDGTRIRSLEEYSSDLLRKPVVPPAKDLAGLSE--VEESGNDD----DGEEEDWV 105
           A++TG +G  IRS    +++LLRKPV+    +    SE  V+E  +D+     G+ E WV
Sbjct: 47  AVKTGSEGGGIRS---DNAELLRKPVISTELETTSESEELVKEESDDEVGKKSGDGEGWV 106

Query: 106 DWEDKILEDTVPLVGFVRMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGID 165
           DWED+ILEDTVPLVGFVRMILHS KY  GDRLSP+H++TIL RLLPYHPEC+KKIG G+D
Sbjct: 107 DWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVD 166

Query: 166 YITVGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNN 220
           YITVGYHPDFE+SRCLFIVRKDGE VDFSYWKCIKGLIRKNYPL+A+SFILRHFRKRR N
Sbjct: 167 YITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRRRN 223

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BLAST of Sed0006832 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-21
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 102  EDKILEDTVPLVGFVRMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYI 161
            E ++L D  P++  +R I+H   Y  GD +S + +  +L+++L +HP+ E K+G G+D+I
Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFI 1795

Query: 162  TVGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFR 221
            TV  H  F  SRC F+V  DG   DFSY K +   + K YP  AE FI ++F K R +  
Sbjct: 1796 TVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSGN 1855

Query: 222  R 223
            R
Sbjct: 1856 R 1856

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BLAST of Sed0006832 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-06
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 139 ILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI 198
           +LD +   H E EKKIG GI    V  HP ++ SRC F+VR+D    DFS+ KC+  ++
Sbjct: 105 LLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWK-SRCFFLVREDDTADDFSFRKCVDQIL 162

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BLAST of Sed0006832 vs. ExPASy Swiss-Prot
Match: P85936 (Protein DCL, chloroplastic (Fragment) OS=Pseudotsuga menziesii OX=3357 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.3e-04
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 98  WVDWEDKILEDTVPLVGFVRMI 120
           WVDWED+IL+DTVPLV FVRMI
Sbjct: 2   WVDWEDQILQDTVPLVNFVRMI 23

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BLAST of Sed0006832 vs. ExPASy TrEMBL
Match: A0A6J1BTU2 (protein DCL homolog, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005680 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.9e-104
Identity = 190/225 (84.44%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFP--AMNSFHPSIRALRTGPDGTRIRSLE 62
           MAMASV KPPPF P+HS NPSF NSS +ILCFP   M S HPSIRAL+TGP+G+RIRS E
Sbjct: 1   MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPMHPMTSLHPSIRALKTGPEGSRIRSHE 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPVVPPAKD A +SE     EESG D + EEEDWVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGE-EEEDWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LHS KYGSGDRLS EHEKTILDRLLPYHPECEKKIGCGIDYIT+GYHPDFESSRCLF
Sbjct: 121 RMVLHSGKYGSGDRLSLEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFR 222
           IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFR+RR N+R
Sbjct: 181 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRRRRRNYR 224

[Close]

BLAST of Sed0006832 vs. ExPASy TrEMBL
Match: A0A5A7VDC9 (Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003370 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100
Identity = 185/226 (81.86%), Postives = 201/226 (88.94%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRSLE 62
           MAMAS+L   PF P+HS NP+FFNSS LILCFP   +NSFHPS RAL+TGP+G+RIRS +
Sbjct: 1   MAMASILTLLPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGSRIRSHQ 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPVVPPAKDLAG SE     EESGND++ EE DWVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVVPPAKDLAGPSEDDDSSEESGNDEE-EEVDWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LH+ KY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYITVGYHPDFESSRCLF
Sbjct: 121 RMVLHTGKYESGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR 223
           IVRKDGELVDFSYWKCIKGLIRKNYPL+AESFILRHFR+RR N RR
Sbjct: 181 IVRKDGELVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRNLRR 225

[Close]

BLAST of Sed0006832 vs. ExPASy TrEMBL
Match: A0A1S3BVA4 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493543 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100
Identity = 185/226 (81.86%), Postives = 201/226 (88.94%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRSLE 62
           MAMAS+L   PF P+HS NP+FFNSS LILCFP   +NSFHPS RAL+TGP+G+RIRS +
Sbjct: 1   MAMASILTLLPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGSRIRSHQ 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPVVPPAKDLAG SE     EESGND++ EE DWVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVVPPAKDLAGPSEDDDSSEESGNDEE-EEVDWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LH+ KY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYITVGYHPDFESSRCLF
Sbjct: 121 RMVLHTGKYESGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR 223
           IVRKDGELVDFSYWKCIKGLIRKNYPL+AESFILRHFR+RR N RR
Sbjct: 181 IVRKDGELVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRNLRR 225

[Close]

BLAST of Sed0006832 vs. ExPASy TrEMBL
Match: A0A0A0L2D0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639820 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.3e-100
Identity = 182/226 (80.53%), Postives = 201/226 (88.94%), Query Frame = 0


Query: 3   MAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRSLE 62
           MAMAS+LKPPPF P+HS NP+FFNSS LILCFP   +NSFHPS RAL+TGP+G R+RS +
Sbjct: 1   MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRLRSHQ 60

Query: 63  EYSSDLLRKPVVPPAKDLAGLSE----VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFV 122
           EYSSDLLRKPV P AKDLAG SE     EESGN+D+ EE +WVDWEDKILEDTVPLVGFV
Sbjct: 61  EYSSDLLRKPVGPSAKDLAGPSEDDDSSEESGNEDE-EEVEWVDWEDKILEDTVPLVGFV 120

Query: 123 RMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLF 182
           RM+LH+ KY +GDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYITVGYHPDFESSRCLF
Sbjct: 121 RMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLF 180

Query: 183 IVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFRR 223
           IVRKDGE+VDFSYWKCIKGLIRKNYPL+AESFILRHFR+RR N RR
Sbjct: 181 IVRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRNSRR 225

[Close]

BLAST of Sed0006832 vs. ExPASy TrEMBL
Match: A0A6J1FJS0 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445979 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.8e-98
Identity = 181/223 (81.17%), Postives = 194/223 (87.00%), Query Frame = 0


Query: 1   MAMAMASVLKPPPFVPYHSPNPSFFNSSSLILCFPA--MNSFHPSIRALRTGPDGTRIRS 60
           M MA+AS+LKPPP VP+HS NPSFF SS +ILCFP   M SFHPS RAL TGP+G+RIRS
Sbjct: 1   MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRS 60

Query: 61  LEEYSSDLLRKPVVPPAKDLAGLSEVEES---GNDDDGEEEDWVDWEDKILEDTVPLVGF 120
            EE SSDLLRKPVVPPAKDLAGLSE EES     DDD EEEDWVDWE+ ILEDTVPLV F
Sbjct: 61  HEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEEDWVDWENIILEDTVPLVTF 120

Query: 121 VRMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCL 180
           VRM+LHS KY  GDRLSPEHEKTIL+RLLPYHP+ EKK+GCGIDYITV YHPD+ESSRCL
Sbjct: 121 VRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCL 180

Query: 181 FIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRN 219
           FIVRKDGELVDFSYWKCIK LIRK YPLHAESFILRHFR+RRN
Sbjct: 181 FIVRKDGELVDFSYWKCIKSLIRKKYPLHAESFILRHFRRRRN 223

[Close]

BLAST of Sed0006832 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 271.6 bits (693), Expect = 5.8e-73
Identity = 138/222 (62.16%), Postives = 165/222 (74.32%), Query Frame = 0


Query: 3   MAMASVLKPPPFV-PYHSPNPSFFNSSSLILC--FPA--MNSFHPSIRALRTGPDGTRIR 62
           M++AS+    P   PY       F+ SS  LC  FP     S  P +RALRT  DG +I 
Sbjct: 1   MSLASIPSSSPVASPYFRCRTYIFSFSSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIG 60

Query: 63  SLEEYSSDLLRKPVVPPAKDLAGLSEVEESGNDDDGEEEDWVDWEDKILEDTVPLVGFVR 122
           + E Y S+LLR+P +   +     SE EE   +++ E +++VDWEDKILE TVPLVGFVR
Sbjct: 61  NSESYGSELLRRPRIASEES----SEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVR 120

Query: 123 MILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLFI 182
           MILHS KY + DRLSPEHE+TI++ LLPYHPECEKKIGCGIDYI VG+HPDFESSRC+FI
Sbjct: 121 MILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFI 180

Query: 183 VRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNN 220
           VRKDGE+VDFSYWKCIKGLI+K YPL+A+SFILRHFRKRR N
Sbjct: 181 VRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218

[Close]

BLAST of Sed0006832 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 268.5 bits (685), Expect = 4.9e-72
Identity = 137/222 (61.71%), Postives = 164/222 (73.87%), Query Frame = 0


Query: 3   MAMASVLKPPPFV-PYHSPNPSFFNSSSLILC--FPA--MNSFHPSIRALRTGPDGTRIR 62
           M++AS+    P   PY       F+ SS  LC  FP     S  P +RALRT  DG +I 
Sbjct: 1   MSLASIPSSSPVASPYFRCRTYIFSFSSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIG 60

Query: 63  SLEEYSSDLLRKPVVPPAKDLAGLSEVEESGNDDDGEEEDWVDWEDKILEDTVPLVGFVR 122
           + E Y S+LLR+P +   +     SE EE   +++ E +++VDWEDKILE TVPLVGFVR
Sbjct: 61  NSESYGSELLRRPRIASEES----SEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVR 120

Query: 123 MILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLFI 182
           MILHS KY + DRLSPEHE+TI++ LLPYHPECEKKIGCGIDYI V +HPDFESSRC+FI
Sbjct: 121 MILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFI 180

Query: 183 VRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNN 220
           VRKDGE+VDFSYWKCIKGLI+K YPL+A+SFILRHFRKRR N
Sbjct: 181 VRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218

[Close]

BLAST of Sed0006832 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-33
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 84  VEESGNDDDGEEEDWVDWEDKILEDTVPLVGFVRMILHSDKYGSGDRLSPEHEKTILDRL 143
           V+ S   +D +   W + E +IL D  P+    + ILHSD+Y  G+RL  E EK ++++L
Sbjct: 73  VDNSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKL 132

Query: 144 LPYHPECEKKIGCGIDYITVGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPL 203
           LPYHP  + KIGCG+D+I V  HP F  SRCLF+VR DG  +DFSY KC++  +R  YP 
Sbjct: 133 LPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPS 192

Query: 204 HAESFILRHFRK 216
           HAE FI  HF++
Sbjct: 193 HAERFIREHFKR 204

[Close]

BLAST of Sed0006832 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 102  EDKILEDTVPLVGFVRMILHSDKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYI 161
            E ++L D  P++  +R I+H   Y  GD +S + +  +L+++L +HP+ E K+G G+D+I
Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFI 1795

Query: 162  TVGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRKRRNNFR 221
            TV  H  F  SRC F+V  DG   DFSY K +   + K YP  AE FI ++F K R +  
Sbjct: 1796 TVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSGN 1855

Query: 222  R 223
            R
Sbjct: 1856 R 1856

[Close]

BLAST of Sed0006832 vs. TAIR 10
Match: AT5G62440.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-07
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 139 ILDRLLPYHPECEKKIGCGIDYITVGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI 198
           +LD +   H E EKKIG GI    V  HP ++ SRC F+VR+D    DFS+ KC+  ++
Sbjct: 105 LLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWK-SRCFFLVREDDTADDFSFRKCVDQIL 162

The following BLAST results are available for this feature:

BLAST of Sed0006832 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897137.1	6.3e-106	85.09	protein DCL homolog, chloroplastic [Benincasa hispida]	[more]
XP_022133006.1	1.0e-103	84.44	protein DCL homolog, chloroplastic [Momordica charantia]	[more]
XP_008452556.1	3.1e-100	81.86	PREDICTED: protein DCL, chloroplastic [Cucumis melo]	[more]
KAA0064386.1	3.1e-100	81.86	protein DCL [Cucumis melo var. makuwa] >TYK20201.1 protein DCL [Cucumis melo var...	[more]
XP_004141259.1	8.9e-100	80.53	protein DCL homolog, chloroplastic [Cucumis sativus] >KGN55194.1 hypothetical pr...	[more]

BLAST of Sed0006832 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C642	8.1e-72	62.16	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	9.3e-68	70.00	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	1.7e-21	39.67	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q8L557	7.8e-06	44.07	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]
P85936	4.3e-04	86.36	Protein DCL, chloroplastic (Fragment) OS=Pseudotsuga menziesii OX=3357 PE=1 SV=1	[more]

BLAST of Sed0006832 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BTU2	4.9e-104	84.44	protein DCL homolog, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11100568...	[more]
A0A5A7VDC9	1.5e-100	81.86	Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003370 P...	[more]
A0A1S3BVA4	1.5e-100	81.86	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493543 PE=4 SV=1	[more]
A0A0A0L2D0	4.3e-100	80.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639820 PE=4 SV=1	[more]
A0A6J1FJS0	1.8e-98	81.17	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Sed0006832 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45230.1	5.8e-73	62.16	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	4.9e-72	61.71	Protein of unknown function (DUF3223)	[more]
AT3G46630.1	1.5e-33	47.73	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	1.2e-22	39.67	nuclear RNA polymerase D1B	[more]
AT5G62440.1	5.5e-07	44.07	Protein of unknown function (DUF3223)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.40		coord: 107..196 e-value: 2.0E-26 score: 94.3
None	No IPR available	PFAM	PF11523	DUF3223	coord: 118..193 e-value: 2.9E-29 score: 101.6
None	No IPR available	PANTHER	PTHR33415:SF15	PROTEIN DCL HOMOLOG, CHLOROPLASTIC	coord: 21..219
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 21..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006832.1	Sed0006832.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding