Sed0006310 (gene) Chayote v1

Overview
NameSed0006310
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCytochrome b6
LocationContig00297: 118736 .. 120144 (-)
RNA-Seq ExpressionSed0006310
SyntenySed0006310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGTGACTTGTTAGAATTGATCCTATGGATACGACAGAGAAGAAGTCGGTCATCTTGATCAAGATGATTTTATCTCGTTGGATATTCAGTCTAGGCTAGTATCTGGAGCACAGAATTTATGAAATAGATTACAAAATATTAGAACTATGATTCATACTTATTAGACCTCGTGGCCGGACTCCGAAAAAAGAGTTAGAAGTGATAAATTCAAAAAATTTTATTCTTTCATTTATACTTATTTTGGTTAAAGGATAAACGTTTCTTTGTCTTTTTTTTCATTATATTAAGTCATTGAATAAGTGATAATCCAAGGGTTCTTACTCAGGGAATTTTTGAACTTTTTTGGAAGGTTTTATTGAATCATCGTGGTTCTAGTATGAATCTAAGGTTTTAATTGATTCATAGGGTCTTAACAAGAGAATTCCTATCAATAATAAAGAAAACAAGAGTAAAGTCGCATTACACATCAATCAAAGAAAAAAATAGGTAATATAGAAGATTCAAGAGGCCCCTAATGATCAATAGAAATACGAATGAGCCGACTTGATATTTGGGCATTATAACTATAAAGAAGACTTTTCGGATTTTGATTCTTTCGTATCTTCAGAGAAAAAATAGAATCATAGCATTAAGAAGTTTGAAACTTTTTAGTACACATATCCGTTACGAGGGGTATTTGGGTGTTTCTGTTTGAGCCGTACGAGACGAAATTCTCATATACGGTTCTCAGAGGGGGATCCCCTTGGTTTACCTATCTCAATAAAGTGTACGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACTGGTGGGTTTAAAAAACCTCGTGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTTGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGAGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

mRNA sequence

ATGAGTGTAGGGGGATCCCCTTGGTTTACCTATCTCAATAAAGTGTACGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACTGGTGGGTTTAAAAAACCTCGTGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTTGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGAGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

Coding sequence (CDS)

ATGAGTGTAGGGGGATCCCCTTGGTTTACCTATCTCAATAAAGTGTACGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACTGGTGGGTTTAAAAAACCTCGTGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTTGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGAGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

Protein sequence

MSVGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Homology
BLAST of Sed0006310 vs. NCBI nr
Match: QHB75994.1 (cytochrome b6 [Cucumis melo subsp. melo])

HSP 1 Score: 454.5 bits (1168), Expect = 5.3e-124
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 183
           PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGS
Sbjct: 131 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGS 190

Query: 184 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Sed0006310 vs. NCBI nr
Match: YP_009627421.1 (cytochrome b6 [Tinospora cordifolia] >QCC70850.1 cytochrome b6 [Tinospora cordifolia] >QJF59505.1 cytochrome b6 [Tinospora sinensis])

HSP 1 Score: 451.4 bits (1160), Expect = 4.5e-123
Identity = 222/225 (98.67%), Postives = 222/225 (98.67%), Query Frame = 0

Query: 2   SVGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 61
           S G  PWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT
Sbjct: 4   SEGEFPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 63

Query: 62  GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 121
           GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF
Sbjct: 64  GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 123

Query: 122 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 181
           KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR
Sbjct: 124 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 183

Query: 182 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 184 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 228

BLAST of Sed0006310 vs. NCBI nr
Match: QUV73617.1 (cytochrome b6 [Euphorbia hirta])

HSP 1 Score: 451.4 bits (1160), Expect = 4.5e-123
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGS WFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 8   GGSFWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 67

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 68  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 127

Query: 124 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 183
           PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS
Sbjct: 128 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 187

Query: 184 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 188 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230

BLAST of Sed0006310 vs. NCBI nr
Match: ABI97446.1 (cytochrome b6, partial [Cucumis sativus] >AHM91224.1 cytochrome b6, partial [Lagenaria siceraria] >ARQ16108.1 cytochrome b6, partial [Cucumis sativus] >ARQ16191.1 cytochrome b6, partial [Cucumis sativus] >ARQ16274.1 cytochrome b6, partial [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 9.9e-123
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 9   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 68

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 69  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 128

Query: 124 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 183
           PRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS
Sbjct: 129 PRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 188

Query: 184 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 189 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 231

BLAST of Sed0006310 vs. NCBI nr
Match: YP_004841813.1 (cytochrome b6 [Cucumis melo subsp. melo] >YP_009860103.1 cytochrome b6 [Cucumis melo subsp. agrestis] >AHM88691.1 cytochrome b6 [Lagenaria siceraria] >QJF46414.1 cytochrome b6 [Cucumis melo] >AEM76922.1 cytochrome b6 [Cucumis melo subsp. melo] >AHM88750.1 cytochrome b6 [Lagenaria siceraria] >AHM88808.1 cytochrome b6 [Lagenaria siceraria])

HSP 1 Score: 450.3 bits (1157), Expect = 9.9e-123
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 183
           PRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS
Sbjct: 131 PRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 190

Query: 184 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Sed0006310 vs. ExPASy Swiss-Prot
Match: Q8S8W0 (Cytochrome b6 OS=Atropa belladonna OX=33113 GN=petB PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 8.2e-120
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 132 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 191
           GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTL 180

Query: 192 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Sed0006310 vs. ExPASy Swiss-Prot
Match: Q6L372 (Cytochrome b6 OS=Saccharum hybrid OX=15819 GN=petB PE=3 SV=2)

HSP 1 Score: 431.0 bits (1107), Expect = 8.2e-120
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 131
           TVTEAF+SVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 132 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 191
           GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 180

Query: 192 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Sed0006310 vs. ExPASy Swiss-Prot
Match: Q6ENT4 (Cytochrome b6 OS=Saccharum officinarum OX=4547 GN=petB PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 8.2e-120
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 131
           TVTEAF+SVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 132 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 191
           GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 180

Query: 192 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Sed0006310 vs. ExPASy Swiss-Prot
Match: Q2MIF8 (Cytochrome b6 OS=Solanum bulbocastanum OX=147425 GN=petB PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 8.2e-120
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 132 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 191
           GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTL 180

Query: 192 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Sed0006310 vs. ExPASy Swiss-Prot
Match: Q2MI71 (Cytochrome b6 OS=Solanum lycopersicum OX=4081 GN=petB PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 8.2e-120
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 132 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 191
           GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTL 180

Query: 192 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Sed0006310 vs. ExPASy TrEMBL
Match: A0A6B9M993 (Cytochrome b6 OS=Cucumis melo subsp. melo OX=412675 GN=petB PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 2.5e-124
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 183
           PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGS
Sbjct: 131 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGS 190

Query: 184 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Sed0006310 vs. ExPASy TrEMBL
Match: A0A4D6IX91 (Cytochrome b6 OS=Tinospora cordifolia OX=285590 GN=petB PE=3 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.2e-123
Identity = 222/225 (98.67%), Postives = 222/225 (98.67%), Query Frame = 0

Query: 2   SVGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 61
           S G  PWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT
Sbjct: 4   SEGEFPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 63

Query: 62  GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 121
           GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF
Sbjct: 64  GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 123

Query: 122 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 181
           KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR
Sbjct: 124 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 183

Query: 182 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 184 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 228

BLAST of Sed0006310 vs. ExPASy TrEMBL
Match: A0A6M3WFA2 (Cytochrome b6 OS=Tinospora sinensis OX=152349 GN=petB PE=3 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.2e-123
Identity = 222/225 (98.67%), Postives = 222/225 (98.67%), Query Frame = 0

Query: 2   SVGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 61
           S G  PWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT
Sbjct: 4   SEGEFPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 63

Query: 62  GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 121
           GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF
Sbjct: 64  GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 123

Query: 122 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 181
           KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR
Sbjct: 124 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 183

Query: 182 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 184 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 228

BLAST of Sed0006310 vs. ExPASy TrEMBL
Match: A0A1X9Q1E4 (Cytochrome b6 (Fragment) OS=Cucumis sativus OX=3659 GN=petB PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 4.8e-123
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 9   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 68

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 69  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 128

Query: 124 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 183
           PRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS
Sbjct: 129 PRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 188

Query: 184 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 189 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 231

BLAST of Sed0006310 vs. ExPASy TrEMBL
Match: A0A1S4EU38 (Cytochrome b6 OS=Cucumis melo OX=3656 GN=petB PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 4.8e-123
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 183
           PRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS
Sbjct: 131 PRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 190

Query: 184 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Sed0006310 vs. TAIR 10
Match: ATCG00720.1 (photosynthetic electron transfer B )

HSP 1 Score: 425.6 bits (1093), Expect = 2.4e-119
Identity = 210/215 (97.67%), Postives = 213/215 (99.07%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 132 GVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 191
           GVVL VLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTL 180

Query: 192 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 227
           TRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

BLAST of Sed0006310 vs. TAIR 10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal )

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-32
Identity = 67/189 (35.45%), Postives = 106/189 (56.08%), Query Frame = 0

Query: 38  PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVH 97
           P +++ ++  G +   C ++Q+ TG  +  +Y P V  AF SV++IM +   GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 98  RWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYW 157
              ASM ++++ LH+FR      +  PRE  W  GVV+ +L       GY LPW Q+ +W
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFW 148

Query: 158 AVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 217
              ++T +  AIPV+G  +V  L G  SV  +TL RF+SLH  +LP +     L+H   +
Sbjct: 149 GATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HLLPFILVGASLLHLAAL 208

Query: 218 RKQGISGPL 227
            + G + PL
Sbjct: 209 HQYGSNNPL 216

BLAST of Sed0006310 vs. TAIR 10
Match: ATMG00220.1 (apocytochrome b )

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-32
Identity = 67/189 (35.45%), Postives = 106/189 (56.08%), Query Frame = 0

Query: 38  PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVH 97
           P +++ ++  G +   C ++Q+ TG  +  +Y P V  AF SV++IM +   GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 98  RWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYW 157
              ASM ++++ LH+FR      +  PRE  W  GVV+ +L       GY LPW Q+ +W
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFW 148

Query: 158 AVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 217
              ++T +  AIPV+G  +V  L G  SV  +TL RF+SLH  +LP +     L+H   +
Sbjct: 149 GATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HLLPFILVGASLLHLAAL 208

Query: 218 RKQGISGPL 227
            + G + PL
Sbjct: 209 HQYGSNNPL 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QHB75994.15.3e-12499.55cytochrome b6 [Cucumis melo subsp. melo][more]
YP_009627421.14.5e-12398.67cytochrome b6 [Tinospora cordifolia] >QCC70850.1 cytochrome b6 [Tinospora cordif... [more]
QUV73617.14.5e-12399.55cytochrome b6 [Euphorbia hirta][more]
ABI97446.19.9e-12399.55cytochrome b6, partial [Cucumis sativus] >AHM91224.1 cytochrome b6, partial [Lag... [more]
YP_004841813.19.9e-12399.55cytochrome b6 [Cucumis melo subsp. melo] >YP_009860103.1 cytochrome b6 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Q8S8W08.2e-12098.60Cytochrome b6 OS=Atropa belladonna OX=33113 GN=petB PE=3 SV=1[more]
Q6L3728.2e-12098.60Cytochrome b6 OS=Saccharum hybrid OX=15819 GN=petB PE=3 SV=2[more]
Q6ENT48.2e-12098.60Cytochrome b6 OS=Saccharum officinarum OX=4547 GN=petB PE=3 SV=1[more]
Q2MIF88.2e-12098.60Cytochrome b6 OS=Solanum bulbocastanum OX=147425 GN=petB PE=3 SV=1[more]
Q2MI718.2e-12098.60Cytochrome b6 OS=Solanum lycopersicum OX=4081 GN=petB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6B9M9932.5e-12499.55Cytochrome b6 OS=Cucumis melo subsp. melo OX=412675 GN=petB PE=3 SV=1[more]
A0A4D6IX912.2e-12398.67Cytochrome b6 OS=Tinospora cordifolia OX=285590 GN=petB PE=3 SV=1[more]
A0A6M3WFA22.2e-12398.67Cytochrome b6 OS=Tinospora sinensis OX=152349 GN=petB PE=3 SV=1[more]
A0A1X9Q1E44.8e-12399.55Cytochrome b6 (Fragment) OS=Cucumis sativus OX=3659 GN=petB PE=3 SV=1[more]
A0A1S4EU384.8e-12399.55Cytochrome b6 OS=Cucumis melo OX=3656 GN=petB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00720.12.4e-11997.67photosynthetic electron transfer B [more]
AT2G07727.13.0e-3235.45Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [more]
ATMG00220.13.0e-3235.45apocytochrome b [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027387Cytochrome b/b6-like domain superfamilyGENE3D1.20.810.10Cytochrome Bc1 Complex; Chain Ccoord: 8..226
e-value: 1.2E-93
score: 315.8
NoneNo IPR availablePIRSFPIRSF000032Cytochrome_b6coord: 12..226
e-value: 8.0E-122
score: 402.7
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 22..226
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 33..221
e-value: 2.7E-86
score: 288.2
IPR005797Cytochrome b/b6, N-terminalPROSITEPS51002CYTB_NTERcoord: 15..226
score: 37.358341
IPR005797Cytochrome b/b6, N-terminalCDDcd00284Cytochrome_b_Ncoord: 25..223
e-value: 2.37942E-93
score: 270.008
IPR023530Cytochrome b6, PetBPANTHERPTHR19271:SF20SUBFAMILY NOT NAMEDcoord: 22..226
IPR023530Cytochrome b6, PetBHAMAPMF_00633Cytb6_f_cytb6coord: 12..226
score: 45.627724
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILY81342Transmembrane di-heme cytochromescoord: 16..226

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0006310.1Sed0006310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016020 membrane
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0016491 oxidoreductase activity