Sed0006095 (gene) Chayote v1

Overview
NameSed0006095
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG11: 24878125 .. 24880158 (+)
RNA-Seq ExpressionSed0006095
SyntenySed0006095
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTCCCGAGGTCCGAGAAAGTCGCAATCAATAGGATTTTCTTAATCCTCGCTTCCCGAAAGCGAAAGGAAGAACTTGAAATTCTTTTTCCTTTCTTCCGTAGGGACCAGGAGATTGGATCTAGCCGTAAGAAGAATGTTTGGCTAATAAATAACTCACTTCTTGGTCGTCGACCCCCTCAGTCACTTGAACACCCCGATCAAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGTTTGAAAAAGATCTTAGAGTGTCTAGGGTTGGGCAGGAGGGTTTCTTAACGCCTTCTTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGAACAAACACACTTGGAGAGCGCAGACAATGGAGAGTTGTATGTTGCGTTCGGGAAGGATGAATCGCTCTCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGATGGCCCGGCCACGCTAAGTAAAAGAATAAAAGAATAGAAGAAGCATCCGACTCCTTCATGCAGCCCCACTTGGCTCTGGGGATATAACTCAGATTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTCTGAGTTGGATGTCTAGTTGTCCAGTGGTAATGATAGTATCTTGTACCAGAACCAGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGTTTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCGATCTAGTATGGATCGTACATGGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCTCATTTGGGATCCACGGGGAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGTGAAATGAGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGTGTGGGTCGCAGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCCTATCTGCTCTCCGGTTGGGGCGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAAAGATTCTTAAGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTTCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGTACCTTTTTCGATTTTGAGAAGAGTTGCAGTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGCACTCCTATGGTACTTAAAAATTAATATCTATTTCAATGGAAGATGCTTTTAATATCTATTTCAATTCCACTCTCATGAATTCGAACTCGAAAATTAATTTTTTGTTTCCCTCTTCCAACTTGTACTTAAAAAAAAAAATCCTTCAAAAATGTATTTTCTTTTTATAGAGATAGAGGTGGAATAAACAAACTAATGCCACGTTCGAGTGGAAATCGAACAGCACTGTACTACCAAAAAAAAAAAACAAGTTGAGGTTGAAGAATGGCGTTGGATTGGAACGGGCATCTCCATTAGCCTTTTCATAGCAGCACAATTACTGGATCTCTTCAATCCCTTCGGTCCGTTTCTTTACTTGGGCTTATTATGAGCCTTTCTTCAAGTCCAGCAATTTGTTCATCTTGTTCGGTCATCTTGTTCAGCTGCTAAAGTTGCAGGTAAGTTAATGGCGCACCCACTTGCTTTCTAGATCTAGATTCTCCTCAATTTCGAATTTCTCTGCAATTTGTTCTTGCCAGCTCTTCTTCCTTGGATCAAATTTCTGGTGGTTTTCTCTTACTCCGTTTTCTTGCTCTCTCACCCGATTTCAGCTCGCATTTCGATCTTCTAG

mRNA sequence

ATGTTTTTCCCGAGGTCCGAGAAAGTCGCAATCAATAGGATTTTCTTAATCCTCGCTTCCCGAAAGCGAAAGGAAGAACTTGAAATTCTTTTTCCTTTCTTCCGTAGGGACCAGGAGATTGGATCTAGCCGTAAGAAGAATGTTTGGCTAATAAATAACTCACTTCTTGGTCGTCGACCCCCTCAGTCACTTGAACACCCCGATCAAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGTTTGAAAAAGATCTTAGAGTGTCTAGGGTTGGGCAGGAGGGTTTCTTAACGCCTTCTTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGCAATTTGTTCATCTTGTTCGGTCATCTTGTTCAGCTGCTAAAGTTGCAGCTCGCATTTCGATCTTCTAG

Coding sequence (CDS)

ATGTTTTTCCCGAGGTCCGAGAAAGTCGCAATCAATAGGATTTTCTTAATCCTCGCTTCCCGAAAGCGAAAGGAAGAACTTGAAATTCTTTTTCCTTTCTTCCGTAGGGACCAGGAGATTGGATCTAGCCGTAAGAAGAATGTTTGGCTAATAAATAACTCACTTCTTGGTCGTCGACCCCCTCAGTCACTTGAACACCCCGATCAAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGTTTGAAAAAGATCTTAGAGTGTCTAGGGTTGGGCAGGAGGGTTTCTTAACGCCTTCTTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGCAATTTGTTCATCTTGTTCGGTCATCTTGTTCAGCTGCTAAAGTTGCAGCTCGCATTTCGATCTTCTAG

Protein sequence

MFFPRSEKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEHPDQVQWDVSIYLSLDSKWEQFEKDLRVSRVGQEGFLTPSFFLLIGVISQRLAMQFVHLVRSSCSAAKVAARISIF
Homology
[Close]
BLAST of Sed0006095 vs. NCBI nr
Match: YP_009540593.1 (hypothetical protein [Ricotia isatoides] >YP_009540605.1 hypothetical protein [Ricotia isatoides] >AYQ22596.1 hypothetical protein [Ricotia isatoides] >AYQ22608.1 hypothetical protein [Ricotia isatoides])

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-24
Identity = 66/80 (82.50%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEH 66
           EK AINRIFLIL S  RKEE EILFP FRRDQEIGSSRKKN WLINNSLLG RPP   E 
Sbjct: 41  EKAAINRIFLILPS--RKEEREILFP-FRRDQEIGSSRKKNAWLINNSLLGLRPPH--ER 100

Query: 67  PDQVQWDVSIYLSLDSKWEQ 87
           P  VQWDVSIYLSLDSKWEQ
Sbjct: 101 PRSVQWDVSIYLSLDSKWEQ 115

[Close]
BLAST of Sed0006095 vs. NCBI nr
Match: PPS03373.1 (hypothetical protein GOBAR_AA17289 [Gossypium barbadense])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-20
Identity = 72/111 (64.86%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEH 66
           EK AINRIFLIL S  RKEE EILFPF  RDQEIGSSRKKN WLINNSLLG RPPQSL  
Sbjct: 691 EKAAINRIFLILPS--RKEEREILFPFC-RDQEIGSSRKKNAWLINNSLLGLRPPQSLRT 750

Query: 67  PDQVQWDVSIYLSLDS--KWEQFEKDLRVSRVGQEG-FLTPSFFLLIGVIS 115
           P  +     +YLS+ S       +KDLRV RVG  G F    FFL IGVIS
Sbjct: 751 P-PISAMGCVYLSISSLEMGAGLKKDLRVFRVGPRGSFNALVFFLPIGVIS 797

[Close]
BLAST of Sed0006095 vs. NCBI nr
Match: KZM80789.1 (hypothetical protein DCAR_031655 [Daucus carota subsp. sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-18
Identity = 54/70 (77.14%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 51  INNSLLGRRPPQSLEHPDQVQWDVSIYLSLDSKWEQ-FEKDLRVSRVGQEGFLTPSFFLL 110
           INNSLLG RPPQSL  P  VQWDVSIYLSLDSKWE   +KDLRVSRVG  G L   FFLL
Sbjct: 4   INNSLLGLRPPQSLRAPRSVQWDVSIYLSLDSKWEPGLKKDLRVSRVGPGGSLNAFFFLL 63

Query: 111 IGVISQRLAM 120
           IGV+SQRLAM
Sbjct: 64  IGVLSQRLAM 73

[Close]
BLAST of Sed0006095 vs. NCBI nr
Match: KZM87441.1 (hypothetical protein DCAR_024575 [Daucus carota subsp. sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-18
Identity = 54/70 (77.14%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 51  INNSLLGRRPPQSLEHPDQVQWDVSIYLSLDSKWEQ-FEKDLRVSRVGQEGFLTPSFFLL 110
           INNSLLG RPPQSL  P  VQWDVSIYLSLDSKWE   +KDLRVSRVG  G L   FFLL
Sbjct: 130 INNSLLGLRPPQSLRAPRSVQWDVSIYLSLDSKWEPGLKKDLRVSRVGPGGSLNAFFFLL 189

Query: 111 IGVISQRLAM 120
           IGV+SQRLAM
Sbjct: 190 IGVLSQRLAM 199

[Close]
BLAST of Sed0006095 vs. NCBI nr
Match: QRM91310.1 (hypothetical protein RF68 [Phalaenopsis wilsonii] >QRM91316.1 hypothetical protein RF68 [Phalaenopsis wilsonii])

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-16
Identity = 68/108 (62.96%), Postives = 76/108 (70.37%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRK-KNVWLINNSLLGRRPPQSLE 66
           +K AINRI  IL S  RKEE EILFP FRRDQEIGSS   + +  INNSLLG RPPQSL 
Sbjct: 89  KKAAINRISRILPS--RKEEREILFP-FRRDQEIGSSHNIRRMLGINNSLLGFRPPQSLR 148

Query: 67  H-PDQVQ-WDVSIY-LSLDSKWEQ---FEKDLRVSRVGQEGFLTPSFF 108
              DQ     + IY L+LDSKWE+    +KDLRVSRVGQ+G LT SFF
Sbjct: 149 ALLDQCNGMCLFIYLLTLDSKWEERAGLKKDLRVSRVGQKGLLTLSFF 193

[Close]
BLAST of Sed0006095 vs. ExPASy TrEMBL
Match: A0A3S5H4C9 (Uncharacterized protein ycf68 OS=Ricotia isatoides OX=1822402 GN=orf133 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.2e-24
Identity = 66/80 (82.50%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEH 66
           EK AINRIFLIL S  RKEE EILFP FRRDQEIGSSRKKN WLINNSLLG RPP   E 
Sbjct: 41  EKAAINRIFLILPS--RKEEREILFP-FRRDQEIGSSRKKNAWLINNSLLGLRPPH--ER 100

Query: 67  PDQVQWDVSIYLSLDSKWEQ 87
           P  VQWDVSIYLSLDSKWEQ
Sbjct: 101 PRSVQWDVSIYLSLDSKWEQ 115

[Close]
BLAST of Sed0006095 vs. ExPASy TrEMBL
Match: A0A6N2MWA8 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS430134 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 72/113 (63.72%), Postives = 77/113 (68.14%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEH 66
           EK AINRIFL L S  RKEE EILFP FRRDQEIGSS KKN WLINNSLLG RPPQSL  
Sbjct: 261 EKAAINRIFLTLPS--RKEEREILFP-FRRDQEIGSSHKKNTWLINNSLLGLRPPQSLRT 320

Query: 67  PDQVQWDVSIYLSLDSKWEQFEKDLRVSRVGQEGFLTPSFFLLIGVISQRLAM 120
           P            + +     +KDLRVS+VG  G L   FFLLIGVIS+RLAM
Sbjct: 321 P-----------PISAMGSGLKKDLRVSKVGPGGSLNAFFFLLIGVISKRLAM 359

[Close]
BLAST of Sed0006095 vs. ExPASy TrEMBL
Match: A0A2P5XJ56 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17289 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 9.6e-21
Identity = 72/111 (64.86%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEH 66
           EK AINRIFLIL S  RKEE EILFPF  RDQEIGSSRKKN WLINNSLLG RPPQSL  
Sbjct: 691 EKAAINRIFLILPS--RKEEREILFPFC-RDQEIGSSRKKNAWLINNSLLGLRPPQSLRT 750

Query: 67  PDQVQWDVSIYLSLDS--KWEQFEKDLRVSRVGQEG-FLTPSFFLLIGVIS 115
           P  +     +YLS+ S       +KDLRV RVG  G F    FFL IGVIS
Sbjct: 751 P-PISAMGCVYLSISSLEMGAGLKKDLRVFRVGPRGSFNALVFFLPIGVIS 797

[Close]
BLAST of Sed0006095 vs. ExPASy TrEMBL
Match: A0A2N9GIA5 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.8e-20
Identity = 68/113 (60.18%), Postives = 71/113 (62.83%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEH 66
           EK AINRIFLIL    RKEE+EILFP FRRDQEIGSS KKN WLINNSLLG RPPQSL  
Sbjct: 671 EKAAINRIFLILPF--RKEEVEILFP-FRRDQEIGSSHKKNAWLINNSLLGLRPPQSLRM 730

Query: 67  PDQVQWDVSIYLSLDSKWEQFEKDLRVSRVGQEGFLTPSFFLLIGVISQRLAM 120
           P                         +S +G EG L   FFLLIGVISQRLAM
Sbjct: 731 PP------------------------ISAMGCEGPLNAFFFLLIGVISQRLAM 756

[Close]
BLAST of Sed0006095 vs. ExPASy TrEMBL
Match: A0A2N9HP93 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.8e-20
Identity = 68/113 (60.18%), Postives = 71/113 (62.83%), Query Frame = 0 

Query: 7   EKVAINRIFLILASRKRKEELEILFPFFRRDQEIGSSRKKNVWLINNSLLGRRPPQSLEH 66
           EK AINRIFLIL    RKEE+EILFP FRRDQEIGSS KKN WLINNSLLG RPPQSL  
Sbjct: 420 EKAAINRIFLILPF--RKEEVEILFP-FRRDQEIGSSHKKNAWLINNSLLGLRPPQSLRM 479

Query: 67  PDQVQWDVSIYLSLDSKWEQFEKDLRVSRVGQEGFLTPSFFLLIGVISQRLAM 120
           P                         +S +G EG L   FFLLIGVISQRLAM
Sbjct: 480 PP------------------------ISAMGCEGPLNAFFFLLIGVISQRLAM 505

The following BLAST results are available for this feature:
BLAST of Sed0006095 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009540593.18.6e-2482.50hypothetical protein [Ricotia isatoides] >YP_009540605.1 hypothetical protein [R... [more]
PPS03373.12.0e-2064.86hypothetical protein GOBAR_AA17289 [Gossypium barbadense][more]
KZM80789.13.2e-1877.14hypothetical protein DCAR_031655 [Daucus carota subsp. sativus][more]
KZM87441.13.2e-1877.14hypothetical protein DCAR_024575 [Daucus carota subsp. sativus][more]
QRM91310.12.3e-1662.96hypothetical protein RF68 [Phalaenopsis wilsonii] >QRM91316.1 hypothetical prote... [more]
BLAST of Sed0006095 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0006095 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3S5H4C94.2e-2482.50Uncharacterized protein ycf68 OS=Ricotia isatoides OX=1822402 GN=orf133 PE=3 SV=... [more]
A0A6N2MWA81.2e-2363.72Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS430134 PE... [more]
A0A2P5XJ569.6e-2164.86Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17289 P... [more]
A0A2N9GIA54.8e-2060.18Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3... [more]
A0A2N9HP934.8e-2060.18Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=3... [more]
BLAST of Sed0006095 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0006095.1Sed0006095.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane