Sed0005610 (gene) Chayote v1

Overview


Name	Sed0005610
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG10: 35353813 .. 35356183 (+)
RNA-Seq Expression	Sed0005610
Synteny	Sed0005610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATTCTCATCAACAACACATGGCTCCATTTAAACCCACAATATATTTCACCATATTTCCCACAGACCCTTCTCATAAAATCATAAAAAATAGTTGATTACGTACCTGAAACTTCCCATCTCAGTAGAAAGCCATGGCTGCAACTTCTGGCGCTCTGCTTAATGGATTAGGCTCAACTTTCCTCTGTGGAGGTAGCAGAAGCCAAACCTTGCTGGCCAGAGCCAGAGGCAGTGTCAATGTCGTAAGCGGCTCTCGTAAACTTGTCATTGTCGCTGCTGCTGCTGCCAAGAAGTCTTGGCTCCCTGGCGTTAGGGGCGGCGGCAACCTCATCAACCCCGAATGGCTCGATGGCTCGTATGTCTCTCTCTCTAACTTTTTTCATGCTGTTGTTGACAAATTTTCAGTTAATGTTTTGAACCGGCTCATCGAAGAGGCATTCAATCAAACACTCAGTTTCAGTAATTACTGTTTTAGTTTAGAAGAGGCATTTTATTGCACTTTCTAAGCATTAAATCACACTTTGGGCAAGTTATTATTGCTAGATTAGAACATGGTATAGGCATTTTTATCCAACATATTCTAAGAAATTACTGTCTACGATCTGGTTCAGACATTTTATCAAAACTTCCTAAGCAATTACTGTTTACAATCTGGTATATGCGTTTTTATCAAACACTTCCTAAGAAATTAGTGTCTTAAATCTGTCATAGGCATTTCATAGAATACTTTGTAAGCAATTACTGTTTACAATCTGGTATATGCAATCTATCAAACACTTAGGGTGTGTTTGGATCCCCATTTATGTAAAGAGCTGAGTTGGTTATAATAACATAACTCATGTTTACCCCATTGTTTATTATAGTCGGTGGTTACCTAAATCTGGATGCCCGTTCATCAAAACCTTACATATATTATTTTTGTTACAATAACCAATCTCTCAAACATCATTTATTATAACTCCGGTTATAACCTGCCTCAAACACCGTATATATTAATCACCACTTATCATAACCCTTCGTCTATCCCACATTGGTGCCCCCAAACACACCCAAATACTAACAAAAATCTGGCTTAGGCATTTCATCGAACATTTTCACGGCAGTTACTCTTCAAAAATATAGAAGAGGCATTTAATCAAACACTTTCTAAGCCAATCACAGTTCAAAACTCTGCAAAAGGCATTTCATCAAACAGTTCATAAGCAATTAATTACCTGTTTCGATTACACAGCCTTCCAGGCGACTACGGCTTCGACCCACTGGGATTAGGGAAGGACCCAGCATTTCTAAAATGGTACAGAGAAGCAGAGCTAATCCACGGCCGGTGGGCAATGGCAGCCGTGCTGGGAATCTTCATCGGCCAGGCCTGGAGTGGGATCCCATGGTTCGCAGCCGGAGCCGAGCCATCCGCAATCGCTCCATTCTCCTTCGGATCACTGCTCGGAACCCAGCTTCTGCTAATGGGGTGGGTCGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCCCAATCCGTGGAATGGGCAACGCCATGGTCGAGAACGGCGGAGAACTTCGCGAATGCAACCGGAGAACAGGGGTACCCCGGTGGGAAATTCTTCGATCCGTTGGGATTTGCCGGAAGTTTGAAGGATGGAGAGTACATACCGGACACGGAGAAGTTGGAGAGATTGAAGCTGGCTGAGATTAAGCATTCTAGAATCGCCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAAACGCCGTTGGGTGCTCTTGGATTGTAAAAATGAATTCTCGATGTGAATGATAAAAATTGTTCATATTTTCACTCTTGGAGATGGATTTTGAATGGGTTTTTTTTGTTGAAGCCCTAAATCAGAATTCAAAATTTCAGTGTGTGTTTTGATTTCTTTTAATTTGTTAGTTGTTAACATATAACTGAACAAATCCAACAAAATTTGGAATATGATTTTGCTGGATATAACGGCTATATTTTGCTAGATAATGTATAGTTATTAGTGGAGTTGAAATGAATTAACACCAAACAAGATACTCAGTTGTGACACTGACCTATTCGATGGAAGAATCGAAAAAACTTTCTTCATTGATAAAAGAAAAGGTCAACATTTTGGTTTATGGTCAATTTGGTTAGTGAAATCAAAAAGATATTTTGTCTATAGTTTGTGGAAGTTGTTGCATGTGTTTGTTGTAATGTCTTGCCATATTAATAGGTTTATTGTCATTTTCTTTTCGTCCTTCAATATGTAAACGGTCGTTATTCTTGTTTATGAGTTTGTTGTTATGAAAGAATGGATTTCCAAACTGGAGCAACAATCAAGCCCGAAAATGGATCTACTTATCCCAAGGAATCCCA

mRNA sequence

CAGATTCTCATCAACAACACATGGCTCCATTTAAACCCACAATATATTTCACCATATTTCCCACAGACCCTTCTCATAAAATCATAAAAAATAGTTGATTACGTACCTGAAACTTCCCATCTCAGTAGAAAGCCATGGCTGCAACTTCTGGCGCTCTGCTTAATGGATTAGGCTCAACTTTCCTCTGTGGAGGTAGCAGAAGCCAAACCTTGCTGGCCAGAGCCAGAGGCAGTGTCAATGTCGTAAGCGGCTCTCGTAAACTTGTCATTGTCGCTGCTGCTGCTGCCAAGAAGTCTTGGCTCCCTGGCGTTAGGGGCGGCGGCAACCTCATCAACCCCGAATGGCTCGATGGCTCCCTTCCAGGCGACTACGGCTTCGACCCACTGGGATTAGGGAAGGACCCAGCATTTCTAAAATGGTACAGAGAAGCAGAGCTAATCCACGGCCGGTGGGCAATGGCAGCCGTGCTGGGAATCTTCATCGGCCAGGCCTGGAGTGGGATCCCATGGTTCGCAGCCGGAGCCGAGCCATCCGCAATCGCTCCATTCTCCTTCGGATCACTGCTCGGAACCCAGCTTCTGCTAATGGGGTGGGTCGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCCCAATCCGTGGAATGGGCAACGCCATGGTCGAGAACGGCGGAGAACTTCGCGAATGCAACCGGAGAACAGGGGTACCCCGGTGGGAAATTCTTCGATCCGTTGGGATTTGCCGGAAGTTTGAAGGATGGAGAGTACATACCGGACACGGAGAAGTTGGAGAGATTGAAGCTGGCTGAGATTAAGCATTCTAGAATCGCCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAAACGCCGTTGGGTGCTCTTGGATTGTAAAAATGAATTCTCGATGTGAATGATAAAAATTGTTCATATTTTCACTCTTGGAGATGGATTTTGAATGGGTTTTTTTTGTTGAAGCCCTAAATCAGAATTCAAAATTTCAGTGTGTGTTTTGATTTCTTTTAATTTGTTAGTTGTTAACATATAACTGAACAAATCCAACAAAATTTGGAATATGATTTTGCTGGATATAACGGCTATATTTTGCTAGATAATGTATAGTTATTAGTGGAGTTGAAATGAATTAACACCAAACAAGATACTCAGTTGTGACACTGACCTATTCGATGGAAGAATCGAAAAAACTTTCTTCATTGATAAAAGAAAAGGTCAACATTTTGGTTTATGGTCAATTTGGTTAGTGAAATCAAAAAGATATTTTGTCTATAGTTTGTGGAAGTTGTTGCATGTGTTTGTTGTAATGTCTTGCCATATTAATAGGTTTATTGTCATTTTCTTTTCGTCCTTCAATATGTAAACGGTCGTTATTCTTGTTTATGAGTTTGTTGTTATGAAAGAATGGATTTCCAAACTGGAGCAACAATCAAGCCCGAAAATGGATCTACTTATCCCAAGGAATCCCA

Coding sequence (CDS)

ATGGCTGCAACTTCTGGCGCTCTGCTTAATGGATTAGGCTCAACTTTCCTCTGTGGAGGTAGCAGAAGCCAAACCTTGCTGGCCAGAGCCAGAGGCAGTGTCAATGTCGTAAGCGGCTCTCGTAAACTTGTCATTGTCGCTGCTGCTGCTGCCAAGAAGTCTTGGCTCCCTGGCGTTAGGGGCGGCGGCAACCTCATCAACCCCGAATGGCTCGATGGCTCCCTTCCAGGCGACTACGGCTTCGACCCACTGGGATTAGGGAAGGACCCAGCATTTCTAAAATGGTACAGAGAAGCAGAGCTAATCCACGGCCGGTGGGCAATGGCAGCCGTGCTGGGAATCTTCATCGGCCAGGCCTGGAGTGGGATCCCATGGTTCGCAGCCGGAGCCGAGCCATCCGCAATCGCTCCATTCTCCTTCGGATCACTGCTCGGAACCCAGCTTCTGCTAATGGGGTGGGTCGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCCCAATCCGTGGAATGGGCAACGCCATGGTCGAGAACGGCGGAGAACTTCGCGAATGCAACCGGAGAACAGGGGTACCCCGGTGGGAAATTCTTCGATCCGTTGGGATTTGCCGGAAGTTTGAAGGATGGAGAGTACATACCGGACACGGAGAAGTTGGAGAGATTGAAGCTGGCTGAGATTAAGCATTCTAGAATCGCCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAAACGCCGTTGGGTGCTCTTGGATTGTAA

Protein sequence

MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWSGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFYFEAGQGKTPLGALGL

Homology

[Close]

BLAST of Sed0005610 vs. NCBI nr
Match: XP_022988907.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 237/256 (92.58%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MAATSGALLNGLGS FL GGSR+QTLLA ARG VNVVS SRKLVIVAAA  KKSW+P V+
Sbjct: 1   MAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVS-SRKLVIVAAAQPKKSWIPAVK 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGN I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFIGQAW
Sbjct: 61  GGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+PSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 121 SGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIF
Sbjct: 181 ENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 255

[Close]

BLAST of Sed0005610 vs. NCBI nr
Match: XP_022927871.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita moschata] >KAG6588777.1 Chlorophyll a-b binding protein CP24 10A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022550.1 Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 477.6 bits (1228), Expect = 6.6e-131
Identity = 236/255 (92.55%), Postives = 244/255 (95.69%), Query Frame = 0


Query: 2   AATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRG 61
           AATSGALLNGLGS FL GGSR+QTLLA ARG VNVVS SRKLVIVAAA  KKSW+P V+G
Sbjct: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVS-SRKLVIVAAAQPKKSWIPAVKG 64

Query: 62  GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWS 121
           GGN I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFIGQAWS
Sbjct: 65  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 124

Query: 122 GIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 181
           GIPWF AGA+PSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 125 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 184

Query: 182 NFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFY 241
           NFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIFY
Sbjct: 185 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 244

Query: 242 FEAGQGKTPLGALGL 257
           FEAGQGKTPLGALGL
Sbjct: 245 FEAGQGKTPLGALGL 258

[Close]

BLAST of Sed0005610 vs. NCBI nr
Match: XP_023531350.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 475.3 bits (1222), Expect = 3.3e-130
Identity = 235/255 (92.16%), Postives = 243/255 (95.29%), Query Frame = 0


Query: 2   AATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRG 61
           AATSGALLNGLGS FL GGSR+Q LLA ARG VNVVS SRKLVIVAAA  KKSW+P V+G
Sbjct: 5   AATSGALLNGLGSPFLHGGSRTQILLAGARGGVNVVS-SRKLVIVAAAQPKKSWIPAVKG 64

Query: 62  GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWS 121
           GGN I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFIGQAWS
Sbjct: 65  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 124

Query: 122 GIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 181
           GIPWF AGA+PSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 125 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 184

Query: 182 NFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFY 241
           NFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIFY
Sbjct: 185 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 244

Query: 242 FEAGQGKTPLGALGL 257
           FEAGQGKTPLGALGL
Sbjct: 245 FEAGQGKTPLGALGL 258

[Close]

BLAST of Sed0005610 vs. NCBI nr
Match: XP_022993917.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 474.9 bits (1221), Expect = 4.3e-130
Identity = 231/256 (90.23%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MAATSGA+LNGLGS FL GGSR+QTLLA ARG VNVV GSRKLVIVAAA  KKSW+P V+
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVV-GSRKLVIVAAAQPKKSWIPAVK 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAG++KDG YIPDTEKLERLKLAEIKH+RIAMLAMLIF
Sbjct: 181 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALG+
Sbjct: 241 YFEAGQGKTPLGALGV 255

[Close]

BLAST of Sed0005610 vs. NCBI nr
Match: XP_008441527.1 (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo] >KAA0054917.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa] >TYK22706.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa])

HSP 1 Score: 474.6 bits (1220), Expect = 5.6e-130
Identity = 231/256 (90.23%), Postives = 244/256 (95.31%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MAATSGA+LNGLGS FL G SR++TLLA ARG VNVVS S KLV++AAA  KKSW+PGVR
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSS-KLVVIAAAQPKKSWIPGVR 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIF
Sbjct: 181 ENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 255

[Close]

BLAST of Sed0005610 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.2e-119
Identity = 206/256 (80.47%), Postives = 229/256 (89.45%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MA TS A+LNGL S+FL GG++SQ LLA    +    + + K   V AAAAKKSW+P VR
Sbjct: 1   MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVR 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF+GQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+P AIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFAN TGEQGYPGGKFFDPL  AG+L +G Y+PDTEKLERLK+AEIKH+R+AMLAMLIF
Sbjct: 181 ENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 256

[Close]

BLAST of Sed0005610 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.1e-115
Identity = 202/257 (78.60%), Postives = 225/257 (87.55%), Query Frame = 0


Query: 1   MAATSG-ALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGV 60
           M  TS  A+LNGL S+FL GG ++Q LL  A  +  V +  R +V  AA A KKSW+P V
Sbjct: 1   MTTTSATAVLNGLSSSFLTGGKKTQALLG-AHVTARVTTPKRFVVAAAAVAPKKSWIPAV 60

Query: 61  RGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQA 120
           + GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF+GQA
Sbjct: 61  KSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 120

Query: 121 WSGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 180
           WSGIPWF AGA+P AIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+T
Sbjct: 121 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKT 180

Query: 181 AENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLI 240
           AENFAN TGEQGYPGGKFFDPL  AG+L +G Y+PDTEKLERLKLAEIKHSR+AMLAMLI
Sbjct: 181 AENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLI 240

Query: 241 FYFEAGQGKTPLGALGL 257
           FYFEAGQGKTPLGALGL
Sbjct: 241 FYFEAGQGKTPLGALGL 256

[Close]

BLAST of Sed0005610 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 9.0e-115
Identity = 201/259 (77.61%), Postives = 228/259 (88.03%), Query Frame = 0


Query: 2   AATSG-ALLNGLGSTFLCGGSRS--QTLLARARGSVNVVSGSRKLVIVAAAAA-KKSWLP 61
           AATS  A++NG  S FL GG +S    L   ++    V + SRKLV+VAAAAA KKSW+P
Sbjct: 3   AATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIP 62

Query: 62  GVRGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIG 121
            V+GGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AVLGIF+G
Sbjct: 63  AVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVG 122

Query: 122 QAWSGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 181
           QAW+GIPWF AGA+P A+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWS
Sbjct: 123 QAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWS 182

Query: 182 RTAENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAM 241
           RTAENF+N+TGEQGYPGGKFFDPL  AG++ +G Y PDT+KLERLKLAEIKH+R+AMLAM
Sbjct: 183 RTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242

Query: 242 LIFYFEAGQGKTPLGALGL 257
           LIFYFEAGQGKTPLGALGL
Sbjct: 243 LIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of Sed0005610 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-30
Identity = 95/243 (39.09%), Postives = 128/243 (52.67%), Query Frame = 0


Query: 8   LLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRGGGNLIN 67
           L  G+   FL     + +++ R   SV    G    +    A  + +WLPG      L  
Sbjct: 5   LRGGITGGFLHHRRDASSVITRRISSVKAAGGG---INPTVAVERATWLPG------LNP 64

Query: 68  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQ--AWSGI-- 127
           P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI  
Sbjct: 65  PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 124

Query: 128 --PWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 187
              W+ AGA     A  S  +L+  Q LLMG+ E+KR++DF +P SQ+ E +  +   A 
Sbjct: 125 LPVWYEAGAVKFDFA--STKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA- 184

Query: 188 NFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFY 245
             A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F+
Sbjct: 185 --ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGFF 224

[Close]

BLAST of Sed0005610 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-30
Identity = 90/245 (36.73%), Postives = 126/245 (51.43%), Query Frame = 0


Query: 5   SGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRGGGN 64
           +G+++    ++FL GG R    L  ++    V S S  +  VAA   +  W PG      
Sbjct: 23  NGSIVGATKASFL-GGKR----LRVSKFIAPVGSRSVAVSAVAADPDRPLWFPG------ 82

Query: 65  LINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWSGI- 124
              PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIFI +  + I 
Sbjct: 83  STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIG 142

Query: 125 -----PWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 184
                 W+ AG +          +L   +L+L+GW E +RW D   P   + +   P   
Sbjct: 143 VLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFP--- 202

Query: 185 TAENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAML 244
              N    T + GYPGG +FDPLG+              K++ L+  EIK+ R+AMLA++
Sbjct: 203 --NNKLTGT-DVGYPGGLWFDPLGWGSG--------SPAKIKELRTKEIKNGRLAMLAVM 239

[Close]

BLAST of Sed0005610 vs. ExPASy TrEMBL
Match: A0A6J1JEC2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486120 PE=3 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.4e-132
Identity = 237/256 (92.58%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MAATSGALLNGLGS FL GGSR+QTLLA ARG VNVVS SRKLVIVAAA  KKSW+P V+
Sbjct: 1   MAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVS-SRKLVIVAAAQPKKSWIPAVK 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGN I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFIGQAW
Sbjct: 61  GGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+PSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 121 SGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIF
Sbjct: 181 ENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 255

[Close]

BLAST of Sed0005610 vs. ExPASy TrEMBL
Match: A0A6J1EIR2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111434638 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.2e-131
Identity = 236/255 (92.55%), Postives = 244/255 (95.69%), Query Frame = 0


Query: 2   AATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRG 61
           AATSGALLNGLGS FL GGSR+QTLLA ARG VNVVS SRKLVIVAAA  KKSW+P V+G
Sbjct: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVS-SRKLVIVAAAQPKKSWIPAVKG 64

Query: 62  GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWS 121
           GGN I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFIGQAWS
Sbjct: 65  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 124

Query: 122 GIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 181
           GIPWF AGA+PSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 125 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 184

Query: 182 NFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFY 241
           NFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIFY
Sbjct: 185 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 244

Query: 242 FEAGQGKTPLGALGL 257
           FEAGQGKTPLGALGL
Sbjct: 245 FEAGQGKTPLGALGL 258

[Close]

BLAST of Sed0005610 vs. ExPASy TrEMBL
Match: A0A6J1JU87 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489772 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.1e-130
Identity = 231/256 (90.23%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MAATSGA+LNGLGS FL GGSR+QTLLA ARG VNVV GSRKLVIVAAA  KKSW+P V+
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVV-GSRKLVIVAAAQPKKSWIPAVK 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAG++KDG YIPDTEKLERLKLAEIKH+RIAMLAMLIF
Sbjct: 181 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALG+
Sbjct: 241 YFEAGQGKTPLGALGV 255

[Close]

BLAST of Sed0005610 vs. ExPASy TrEMBL
Match: A0A5D3DGI0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00250 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.7e-130
Identity = 231/256 (90.23%), Postives = 244/256 (95.31%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MAATSGA+LNGLGS FL G SR++TLLA ARG VNVVS S KLV++AAA  KKSW+PGVR
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSS-KLVVIAAAQPKKSWIPGVR 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIF
Sbjct: 181 ENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 255

[Close]

BLAST of Sed0005610 vs. ExPASy TrEMBL
Match: A0A1S3B4E4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485628 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.7e-130
Identity = 231/256 (90.23%), Postives = 244/256 (95.31%), Query Frame = 0


Query: 1   MAATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVR 60
           MAATSGA+LNGLGS FL G SR++TLLA ARG VNVVS S KLV++AAA  KKSW+PGVR
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSS-KLVVIAAAQPKKSWIPGVR 60

Query: 61  GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAW 120
           GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120

Query: 121 SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWF AGA+P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIF 240
           ENFANATGEQGYPGGKFFDPLGFAG+LKDG YIPDTEKLERLKLAEIKH+RIAMLAMLIF
Sbjct: 181 ENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 257
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 255

[Close]

BLAST of Sed0005610 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 419.9 bits (1078), Expect = 1.5e-117
Identity = 202/255 (79.22%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 3   ATSGALLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAA-AKKSWLPGVRG 62
           A SGA+L+GLGS+FL GG R  T LA   G+     G + L++ AAAA  KKSW+P V+G
Sbjct: 4   AVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKG 63

Query: 63  GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWS 122
           GGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF+GQAWS
Sbjct: 64  GGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 123

Query: 123 GIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 182
           G+ WF AGA+P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+TAE
Sbjct: 124 GVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAE 183

Query: 183 NFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFY 242
           NFAN TG+QGYPGG+FFDPLG AG  +DG Y PD EKLERLKLAEIKHSR+AM+AMLIFY
Sbjct: 184 NFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFY 243

Query: 243 FEAGQGKTPLGALGL 257
           FEAGQGKTPLGALGL
Sbjct: 244 FEAGQGKTPLGALGL 258

[Close]

BLAST of Sed0005610 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 134.8 bits (338), Expect = 9.7e-32
Identity = 95/243 (39.09%), Postives = 128/243 (52.67%), Query Frame = 0


Query: 8   LLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRGGGNLIN 67
           L  G+   FL     + +++ R   SV    G    +    A  + +WLPG      L  
Sbjct: 5   LRGGITGGFLHHRRDASSVITRRISSVKAAGGG---INPTVAVERATWLPG------LNP 64

Query: 68  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQ--AWSGI-- 127
           P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI  
Sbjct: 65  PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 124

Query: 128 --PWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 187
              W+ AGA     A  S  +L+  Q LLMG+ E+KR++DF +P SQ+ E +  +   A 
Sbjct: 125 LPVWYEAGAVKFDFA--STKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA- 184

Query: 188 NFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFY 245
             A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F+
Sbjct: 185 --ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGFF 224

[Close]

BLAST of Sed0005610 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 134.8 bits (338), Expect = 9.7e-32
Identity = 95/243 (39.09%), Postives = 128/243 (52.67%), Query Frame = 0


Query: 8   LLNGLGSTFLCGGSRSQTLLARARGSVNVVSGSRKLVIVAAAAAKKSWLPGVRGGGNLIN 67
           L  G+   FL     + +++ R   SV    G    +    A  + +WLPG      L  
Sbjct: 5   LRGGITGGFLHHRRDASSVITRRISSVKAAGGG---INPTVAVERATWLPG------LNP 64

Query: 68  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQ--AWSGI-- 127
           P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI  
Sbjct: 65  PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 124

Query: 128 --PWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 187
              W+ AGA     A  S  +L+  Q LLMG+ E+KR++DF +P SQ+ E +  +   A 
Sbjct: 125 LPVWYEAGAVKFDFA--STKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA- 184

Query: 188 NFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFY 245
             A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F+
Sbjct: 185 --ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGFF 224

[Close]

BLAST of Sed0005610 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 132.9 bits (333), Expect = 3.7e-31
Identity = 85/224 (37.95%), Postives = 115/224 (51.34%), Query Frame = 0


Query: 29  RARGSVNVVSGSRKLVIVAAAAA---KKSWLPGVRGGGNLINPEWLDGSLPGDYGFDPLG 88
           R +  + V + SR    V A AA   +  W PG         PEWLDGSLPGD+GFDPLG
Sbjct: 26  RLKKKLTVPAVSRPDASVRAVAADPDRPIWFPG------STPPEWLDGSLPGDFGFDPLG 85

Query: 89  LGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAWSGI------PWFAAGAEPSAIAPFS 148
           L  DP  LKW  +AE++H RWAM    GIFI +  + I       W+ AG +        
Sbjct: 86  LSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFT---D 145

Query: 149 FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFD 208
             +L   +L+L+GW E +RW D   P S + +   P      N    T + GYPGG +FD
Sbjct: 146 KTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP-----NNKLTGT-DVGYPGGLWFD 205

Query: 209 PLGFAGSLKDGEYIPDTEKLERLKLAEIKHSRIAMLAMLIFYFE 244
           PLG+              KL+ L+  EIK+ R+AMLA++  +F+
Sbjct: 206 PLGWGSG--------SPAKLKELRTKEIKNGRLAMLAVMGAWFQ 226

[Close]

BLAST of Sed0005610 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 131.7 bits (330), Expect = 8.2e-31
Identity = 98/260 (37.69%), Postives = 124/260 (47.69%), Query Frame = 0


Query: 7   ALLNGLGSTFLCGGSRSQTLLARARGSVNVVS-GSR----KLVIVAAAAAKKS------- 66
           A+ + L ST     SR Q    R     +  S G R    +LV+V A     S       
Sbjct: 4   AIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEPLPP 63

Query: 67  ----WLPGVRGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAA 126
               W PG         PEWLDGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWAM A
Sbjct: 64  DRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 123

Query: 127 VLGIFIGQAW------SGIPWFAAGAEPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFN 186
           V GI I +            W+ AG+           +L   Q++LMGW E +RW D   
Sbjct: 124 VTGIIIPECLERLGFIENFSWYDAGSREYFA---DSTTLFVAQMVLMGWAEGRRWADLIK 183

Query: 187 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSLKDGEYIPDTEKLERLKL 245
           P S  +E   P      +  N   + GYPGG +FD + +      G   P+   + R K 
Sbjct: 184 PGSVDIEPKYP------HKVNPKPDVGYPGGLWFDFMMW------GRGSPEPVMVLRTK- 240

The following BLAST results are available for this feature:

BLAST of Sed0005610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988907.1	1.3e-131	92.58	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]
XP_022927871.1	6.6e-131	92.55	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita moschata...	[more]
XP_023531350.1	3.3e-130	92.16	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022993917.1	4.3e-130	90.23	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]
XP_008441527.1	5.6e-130	90.23	PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo...	[more]

BLAST of Sed0005610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27524	1.2e-119	80.47	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P27525	1.1e-115	78.60	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
P36494	9.0e-115	77.61	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
Q9C639	1.4e-30	39.09	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P13869	2.3e-30	36.73	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of Sed0005610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEC2	6.4e-132	92.58	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EIR2	3.2e-131	92.55	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JU87	2.1e-130	90.23	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3DGI0	2.7e-130	90.23	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B4E4	2.7e-130	90.23	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Sed0005610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	1.5e-117	79.22	light harvesting complex photosystem II subunit 6	[more]
AT1G45474.1	9.7e-32	39.09	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	9.7e-32	39.09	photosystem I light harvesting complex gene 5	[more]
AT3G61470.1	3.7e-31	37.95	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	8.2e-31	37.69	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 68..244 e-value: 2.0E-47 score: 161.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 68..255 e-value: 4.0E-53 score: 182.1
None	No IPR available	PANTHER	PTHR21649:SF107	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 2..256
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 66..256
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005610.1	Sed0005610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding