Sed0004590 (gene) Chayote v1

Overview


Name	Sed0004590
Type	gene
Organism	Sechium edule (Chayote v1)
Description	17.8 kDa class I heat shock protein-like
Location	LG04: 40490936 .. 40491611 (-)
RNA-Seq Expression	Sed0004590
Synteny	Sed0004590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGATTCCAAGCATTTTCGGTGATCGAAGAAGCAACATCTTCGACCCATTTTCAAGCTCATTATCAGCCGACTACTTCCCATCCTCTGCTTTTGCCAACACTCGAATCGACTGGAAGGAAACCCCAGAAGCTCATATATTCAAGGCGGATCTGCCAGGGATCAACAAGGAAGAGGTCAAAGTTGAGGTTGAAGAGGGCAAAGTGTTGCAGATCAGTGGGGAGAGAAGCAAAGAACAGGAACAGAAGAATGACAAATGGCATAGGATTGAGAGGAGCAGTGGGAGGTTTATGAGGAGATTCAGGCTCCCACAGAATGCTGAGGTTGAACAAGTGAAGGCCAATATGGACAATGGAGTGCTCACTGTCACTGTGCCTAAGATGGAACAGAAGAAGCCTGAAATCAAATCTATTGACATCTCTGGTTGAATTTAAGGCATTGTTTGTGGGTTCTGCCATTTGGGTTCTCATGCTCTTGTGTCATTGTGTGCAACCTTTTTGAAGTTTAAACAGTTTGGTGTTGTGTTATGTGTACTTTGCTTATATGATATTATGATGGGATGATGAATAAAATGATGAGTTTTTTATGGTTTAGTGATCACAACATTTCTACAACACTGAACCTTTTTGTTGTTGTTGGCTTGGCTAAGCATGGATTTTGAACTTGTGGAAG

mRNA sequence

ATGGCTATGATTCCAAGCATTTTCGGTGATCGAAGAAGCAACATCTTCGACCCATTTTCAATGAAGGCCAATATGGACAATGGAGTGCTCACTGTCACTGTGCCTAAGATGGAACAGAAGAAGCCTGAAATCAAATCTATTGACATCTCTGGTTGAATTTAAGGCATTGTTTGTGGGTTCTGCCATTTGGGTTCTCATGCTCTTGTGTCATTGTGTGCAACCTTTTTGAAGTTTAAACAGTTTGGTGTTGTGTTATGTGTACTTTGCTTATATGATATTATGATGGGATGATGAATAAAATGATGAGTTTTTTATGGTTTAGTGATCACAACATTTCTACAACACTGAACCTTTTTGTTGTTGTTGGCTTGGCTAAGCATGGATTTTGAACTTGTGGAAG

Coding sequence (CDS)

ATGGCTATGATTCCAAGCATTTTCGGTGATCGAAGAAGCAACATCTTCGACCCATTTTCAATGAAGGCCAATATGGACAATGGAGTGCTCACTGTCACTGTGCCTAAGATGGAACAGAAGAAGCCTGAAATCAAATCTATTGACATCTCTGGTTGA

Protein sequence

MAMIPSIFGDRRSNIFDPFSMKANMDNGVLTVTVPKMEQKKPEIKSIDISG

Homology

[Close]

BLAST of Sed0004590 vs. NCBI nr
Match: DAD42905.1 (TPA_asm: hypothetical protein HUJ06_001135 [Nelumbo nucifera])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 40/83 (48.19%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 1  MAMIPSIFGDRRSNIFDPFSM--------------------------------KANMDNG 52
          M++IPSIFG RRSNIFDPFSM                                KA ++NG
Sbjct: 1  MSIIPSIFGGRRSNIFDPFSMDLWDPFHDFTFTGGNSTNQWRALLENARVDQVKAAVENG 60

[Close]

BLAST of Sed0004590 vs. NCBI nr
Match: PKI36238.1 (hypothetical protein CRG98_043390 [Punica granatum])

HSP 1 Score: 66.6 bits (161), Expect = 7.0e-08
Identity = 38/91 (41.76%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 1  MAMIPSIFGDRRSNIFDPFSM--------------------------------------- 52
          M++IPS FG RRSN+FDPFS+                                       
Sbjct: 1  MSLIPSWFGGRRSNVFDPFSLELWDPFKDFPFPNSTSLSTNFWGVREHEDRLEGDPGGAR 60

[Close]

BLAST of Sed0004590 vs. NCBI nr
Match: KAF3652853.1 (putative WRKY transcription factor 33-like [Capsicum annuum] >KAF3670622.1 putative WRKY transcription factor 33-like [Capsicum annuum] >PHT89386.1 hypothetical protein T459_04499 [Capsicum annuum])

HSP 1 Score: 63.5 bits (153), Expect = 5.9e-07
Identity = 40/102 (39.22%), Postives = 47/102 (46.08%), Query Frame = 0


Query: 1   MAMIPSIFGDRRSNIFDPFSM--------------------------------------- 51
           M++IPS FGDRRSNIFDPFS+                                       
Sbjct: 1   MSLIPSFFGDRRSNIFDPFSLDLWDPFKGFPNSSTIANTPSSARETPTFTNARIDWKEIP 60

[Close]

BLAST of Sed0004590 vs. NCBI nr
Match: XP_038891373.1 (17.8 kDa class I heat shock protein-like [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-06
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KANMDNGVLTVTVPKME+KKPE+KSIDISG
Sbjct: 129 VKANMDNGVLTVTVPKMEEKKPEMKSIDISG 159

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BLAST of Sed0004590 vs. NCBI nr
Match: PHU24899.1 (hypothetical protein BC332_03231 [Capsicum chinense])

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-06
Identity = 39/102 (38.24%), Postives = 46/102 (45.10%), Query Frame = 0


Query: 1   MAMIPSIFGDRRSNIFDPFSM--------------------------------------- 51
           M++IPS FGDRRSNIFDPFS+                                       
Sbjct: 1   MSLIPSFFGDRRSNIFDPFSLDLWDPFKGFPNSSIIANTPSSARETPTFTNARIDWKETP 60

[Close]

BLAST of Sed0004590 vs. ExPASy Swiss-Prot
Match: P13853 (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-06
Identity = 23/31 (74.19%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KA+M+NGVL+VTVPK+ +KKPE+KSIDISG
Sbjct: 127 IKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

[Close]

BLAST of Sed0004590 vs. ExPASy Swiss-Prot
Match: P27397 (18.0 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-06
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KA M+NGVLTVTVPK+E KKPE+KSI ISG
Sbjct: 129 VKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159

[Close]

BLAST of Sed0004590 vs. ExPASy Swiss-Prot
Match: Q84J50 (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 18  PFSMKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           P  +KA+M+NGVLTVTVPK E KKP++KSI ISG
Sbjct: 126 PEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159

[Close]

BLAST of Sed0004590 vs. ExPASy Swiss-Prot
Match: Q84Q77 (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP17.9A PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 18  PFSMKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           P  +KA+M+NGVLTVTVPK E KKP++KSI ISG
Sbjct: 128 PEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161

[Close]

BLAST of Sed0004590 vs. ExPASy Swiss-Prot
Match: P30221 (17.8 kDa class I heat shock protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-06
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KA+M+NGVLTVTVPK E KKPE+KSI+ISG
Sbjct: 124 VKASMENGVLTVTVPKEEVKKPEVKSIEISG 154

[Close]

BLAST of Sed0004590 vs. ExPASy TrEMBL
Match: A0A0A0KLT1 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G190540 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MAMIPSIFGDRRSNIFDPFSMKAN----MDNGVLTVTVPKMEQKKPEIKSIDISG 52
          MA+IPSIF  RRSN+FDPFS+  +      NGVLTVTVPKME+KKPEIKSIDISG
Sbjct: 1  MALIPSIFSGRRSNVFDPFSLDISHIHASKNGVLTVTVPKMEEKKPEIKSIDISG 55

[Close]

BLAST of Sed0004590 vs. ExPASy TrEMBL
Match: A0A2I0HX20 (SHSP domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_043390 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 38/91 (41.76%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 1  MAMIPSIFGDRRSNIFDPFSM--------------------------------------- 52
          M++IPS FG RRSN+FDPFS+                                       
Sbjct: 1  MSLIPSWFGGRRSNVFDPFSLELWDPFKDFPFPNSTSLSTNFWGVREHEDRLEGDPGGAR 60

[Close]

BLAST of Sed0004590 vs. ExPASy TrEMBL
Match: A0A2G3A564 (SHSP domain-containing protein OS=Capsicum annuum OX=4072 GN=T459_04499 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 40/102 (39.22%), Postives = 47/102 (46.08%), Query Frame = 0


Query: 1   MAMIPSIFGDRRSNIFDPFSM--------------------------------------- 51
           M++IPS FGDRRSNIFDPFS+                                       
Sbjct: 1   MSLIPSFFGDRRSNIFDPFSLDLWDPFKGFPNSSTIANTPSSARETPTFTNARIDWKEIP 60

[Close]

BLAST of Sed0004590 vs. ExPASy TrEMBL
Match: A0A2G3D1N9 (SHSP domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_03231 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 39/102 (38.24%), Postives = 46/102 (45.10%), Query Frame = 0


Query: 1   MAMIPSIFGDRRSNIFDPFSM--------------------------------------- 51
           M++IPS FGDRRSNIFDPFS+                                       
Sbjct: 1   MSLIPSFFGDRRSNIFDPFSLDLWDPFKGFPNSSIIANTPSSARETPTFTNARIDWKETP 60

[Close]

BLAST of Sed0004590 vs. ExPASy TrEMBL
Match: A0A5D3BEM2 (18.1 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G001020 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.0e-06
Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KANM+NGVLTVTVPKME+KKPEIKSIDI+G
Sbjct: 129 VKANMENGVLTVTVPKMEEKKPEIKSIDIAG 159

[Close]

BLAST of Sed0004590 vs. TAIR 10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.3e-07
Identity = 23/31 (74.19%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KA+M+NGVL+VTVPK+ +KKPE+KSIDISG
Sbjct: 127 IKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

HSP 2 Score: 39.3 bits (90), Expect = 1.1e-03
Identity = 15/21 (71.43%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 1  MAMIPSIFGDRRSNIFDPFSM 22
          M++IPSIFG RR+N+FDPFS+
Sbjct: 1  MSLIPSIFGGRRTNVFDPFSL 21

[Close]

BLAST of Sed0004590 vs. TAIR 10
Match: AT3G46230.1 (heat shock protein 17.4 )

HSP 1 Score: 51.2 bits (121), Expect = 2.8e-07
Identity = 21/31 (67.74%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KA+M+NGVL+VTVPK+++ KPE+KS+DISG
Sbjct: 126 VKASMENGVLSVTVPKVQESKPEVKSVDISG 156

[Close]

BLAST of Sed0004590 vs. TAIR 10
Match: AT5G59720.1 (heat shock protein 18.2 )

HSP 1 Score: 49.7 bits (117), Expect = 8.2e-07
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQKKPEIKSIDISG 52
           +KA M+NGVLTV VPK  +KKP++KSIDISG
Sbjct: 129 VKATMENGVLTVVVPKAPEKKPQVKSIDISG 159

HSP 2 Score: 39.7 bits (91), Expect = 8.5e-04
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 1  MAMIPSIFGDRRSNIFDPFS 21
          M++IPSIFG RRSN+FDPFS
Sbjct: 1  MSLIPSIFGGRRSNVFDPFS 20

[Close]

BLAST of Sed0004590 vs. TAIR 10
Match: AT1G07400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 5.3e-06
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKMEQ--KKPEIKSIDISG 52
           +KA+M+NGVLTVTVPK+E+  KK ++KSIDISG
Sbjct: 125 VKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157

[Close]

BLAST of Sed0004590 vs. TAIR 10
Match: AT1G59860.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  MKANMDNGVLTVTVPKME--QKKPEIKSIDISG 52
           +KA+M+NGVLTVTVPK+E  +KK ++KSIDISG
Sbjct: 123 VKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155

The following BLAST results are available for this feature:

BLAST of Sed0004590 vs. NCBI nr


Match Name	E-value	Identity	Description
DAD42905.1	2.4e-08	48.19	TPA_asm: hypothetical protein HUJ06_001135 [Nelumbo nucifera]	[more]
PKI36238.1	7.0e-08	41.76	hypothetical protein CRG98_043390 [Punica granatum]	[more]
KAF3652853.1	5.9e-07	39.22	putative WRKY transcription factor 33-like [Capsicum annuum] >KAF3670622.1 putat...	[more]
XP_038891373.1	5.0e-06	90.32	17.8 kDa class I heat shock protein-like [Benincasa hispida]	[more]
PHU24899.1	5.0e-06	38.24	hypothetical protein BC332_03231 [Capsicum chinense]	[more]

BLAST of Sed0004590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P13853	1.8e-06	74.19	17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6...	[more]
P27397	1.8e-06	77.42	18.0 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1	[more]
Q84J50	2.3e-06	70.59	17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q84Q77	2.3e-06	70.59	17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
P30221	2.3e-06	77.42	17.8 kDa class I heat shock protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]

BLAST of Sed0004590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLT1	6.6e-12	72.73	SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G190540 PE=4 S...	[more]
A0A2I0HX20	3.4e-08	41.76	SHSP domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_043390 PE=4 ...	[more]
A0A2G3A564	2.9e-07	39.22	SHSP domain-containing protein OS=Capsicum annuum OX=4072 GN=T459_04499 PE=4 SV=...	[more]
A0A2G3D1N9	2.4e-06	38.24	SHSP domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_03231 PE=4...	[more]
A0A5D3BEM2	7.0e-06	87.10	18.1 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Sed0004590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53540.1	1.3e-07	74.19	HSP20-like chaperones superfamily protein	[more]
AT3G46230.1	2.8e-07	67.74	heat shock protein 17.4	[more]
AT5G59720.1	8.2e-07	70.97	heat shock protein 18.2	[more]
AT1G07400.1	5.3e-06	69.70	HSP20-like chaperones superfamily protein	[more]
AT1G59860.1	6.9e-06	69.70	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 11..51 e-value: 2.2E-9 score: 39.2
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 20..51
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 16..50 e-value: 1.4E-6 score: 28.4
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 1..51 score: 10.740755
None	No IPR available	PANTHER	PTHR11527:SF323	17.3 KDA CLASS I HEAT SHOCK PROTEIN	coord: 1..21
None	No IPR available	PANTHER	PTHR11527:SF323	17.3 KDA CLASS I HEAT SHOCK PROTEIN	coord: 21..51
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	HEAT-SHOCK PROTEIN 20 FAMILY MEMBER	coord: 1..21 coord: 21..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004590.1	Sed0004590.1	mRNA