Sed0004445 (gene) Chayote v1

Overview
NameSed0004445
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 17092145 .. 17092551 (-)
RNA-Seq ExpressionSed0004445
SyntenySed0004445
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGCAAAAGAAACCCAAAGCTTAGCTCCAATGAGTTTAAGGCTCATATATCCCATCACACAAGAAACTCCCGGCCACGCGCCCCCGCCGCTAACCCGATTTTCAGCCATAGTGCCGCCGCGGTTCGACCGTGGTTCGAGAGCCCAAATTCAAATAACTCTGCAGACCATTTACGAAGATGAAAGTACTGAGAGCCAAAACGAGGCCAAAATGTGGCGCCACCATTGTTATGATCGTAAACAAGCTTCTTCTAATTCTTTCTCCAAGGCTCTTTCCTGTTTTCGTCCTCTTCGATCGTTGAAATGTTCTTAATTAAGCCCCTAATCCCATCTCTCTCTGTTTCTATGCCTTTAATTATACTTTAATCTCTGTTTCATCATGTAATTTTGCTTATTTTCTTTACCGC

mRNA sequence

GTTTGCAAAAGAAACCCAAAGCTTAGCTCCAATGAGTTTAAGGCTCATATATCCCATCACACAAGAAACTCCCGGCCACGCGCCCCCGCCGCTAACCCGATTTTCAGCCATAGTGCCGCCGCGGTTCGACCGTGGTTCGAGAGCCCAAATTCAAATAACTCTGCAGACCATTTACGAAGATGAAAGTACTGAGAGCCAAAACGAGGCCAAAATGTGGCGCCACCATTGTTATGATCGTAAACAAGCTTCTTCTAATTCTTTCTCCAAGGCTCTTTCCTGTTTTCGTCCTCTTCGATCGTTGAAATGTTCTTAATTAAGCCCCTAATCCCATCTCTCTCTGTTTCTATGCCTTTAATTATACTTTAATCTCTGTTTCATCATGTAATTTTGCTTATTTTCTTTACCGC

Coding sequence (CDS)

ATGAGTTTAAGGCTCATATATCCCATCACACAAGAAACTCCCGGCCACGCGCCCCCGCCGCTAACCCGATTTTCAGCCATAGTGCCGCCGCGGTTCGACCGTGGTTCGAGAGCCCAAATTCAAATAACTCTGCAGACCATTTACGAAGATGAAAGTACTGAGAGCCAAAACGAGGCCAAAATGTGGCGCCACCATTGTTATGATCGTAAACAAGCTTCTTCTAATTCTTTCTCCAAGGCTCTTTCCTGTTTTCGTCCTCTTCGATCGTTGAAATGTTCTTAA

Protein sequence

MSLRLIYPITQETPGHAPPPLTRFSAIVPPRFDRGSRAQIQITLQTIYEDESTESQNEAKMWRHHCYDRKQASSNSFSKALSCFRPLRSLKCS
Homology
BLAST of Sed0004445 vs. NCBI nr
Match: KAG6583881.1 (hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-19
Identity = 62/109 (56.88%), Postives = 68/109 (62.39%), Query Frame = 0

Query: 1   MSLRLIYPITQETP----------------GHAPPPLTRFSAIVPPRFDRGSRAQIQITL 60
           MS RL+YPI+QE P                G A PPLTRFSAI PPR    SR QIQ+TL
Sbjct: 1   MSPRLVYPISQEMPNNNNSPKPIAPNPRSSGQASPPLTRFSAIAPPRSGGISRTQIQVTL 60

Query: 61  QTIYEDESTESQNEAKMWRHHCYDRKQASSNSFSKALSCFRPLRSLKCS 94
           QTIYEDES +     +  R HCYDRK + S   S ALSCFRPLRSLKCS
Sbjct: 61  QTIYEDESEDRMCRRRRRRRHCYDRKPSFS---SAALSCFRPLRSLKCS 106

BLAST of Sed0004445 vs. NCBI nr
Match: KAE8653296.1 (hypothetical protein Csa_023338 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 8.2e-15
Identity = 60/103 (58.25%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 1  MSLRLIYPITQE---------TPGHAP-PPLTRFSAIVPPRFDRGSRAQIQITLQTIYED 60
          MSLRLIYPI QE         TP   P  PLTRFSAI PPRF   SR  IQITL TIYE+
Sbjct: 1  MSLRLIYPIAQEMANNNTTTLTPSSQPSTPLTRFSAIAPPRFSCASRPHIQITLYTIYEE 60

Query: 61 ESTESQNEAKMWRHHCYDRKQASSNSFSKALSCFRPLRSLKCS 94
          E+     E K+    C    QA S+SFS ALSCFRPLRS+KCS
Sbjct: 61 ET-----EVKI----C----QAPSSSFSSALSCFRPLRSVKCS 90

BLAST of Sed0004445 vs. NCBI nr
Match: KAA0054012.1 (hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK20698.1 hypothetical protein E5676_scaffold480G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 50/85 (58.82%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 10 TQETPGHAP-PPLTRFSAIVPPRFDRGSRAQIQITLQTIYEDESTESQNEAKMWRHHCYD 69
          T  TP   P  PLTRFSAIVPPRF   SR QIQITL TIYE+E+     E K     C  
Sbjct: 8  TTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEET-----EVKF----C-- 67

Query: 70 RKQASSNSFSKALSCFRPLRSLKCS 94
            QASS+S S ALS FRPL S+KCS
Sbjct: 68 --QASSSSVSSALSYFRPLGSVKCS 79

BLAST of Sed0004445 vs. ExPASy TrEMBL
Match: A0A0A0M102 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 50/85 (58.82%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 10 TQETPGHAP-PPLTRFSAIVPPRFDRGSRAQIQITLQTIYEDESTESQNEAKMWRHHCYD 69
          T  TP   P  PLTRFSAI PPRF   SR  IQITL TIYE+E+     E K+    C  
Sbjct: 7  TTLTPSSQPSTPLTRFSAIAPPRFSCASRPHIQITLYTIYEEET-----EVKI----C-- 66

Query: 70 RKQASSNSFSKALSCFRPLRSLKCS 94
            QA S+SFS ALSCFRPLRS+KCS
Sbjct: 67 --QAPSSSFSSALSCFRPLRSVKCS 78

BLAST of Sed0004445 vs. ExPASy TrEMBL
Match: A0A5D3DAX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00920 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 50/85 (58.82%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 10 TQETPGHAP-PPLTRFSAIVPPRFDRGSRAQIQITLQTIYEDESTESQNEAKMWRHHCYD 69
          T  TP   P  PLTRFSAIVPPRF   SR QIQITL TIYE+E+     E K     C  
Sbjct: 8  TTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEET-----EVKF----C-- 67

Query: 70 RKQASSNSFSKALSCFRPLRSLKCS 94
            QASS+S S ALS FRPL S+KCS
Sbjct: 68 --QASSSSVSSALSYFRPLGSVKCS 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6583881.13.2e-1956.88hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8653296.18.2e-1558.25hypothetical protein Csa_023338 [Cucumis sativus][more]
KAA0054012.12.3e-0958.82hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK2069... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M1023.5e-1158.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1[more]
A0A5D3DAX81.1e-0958.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004445.1Sed0004445.1mRNA