Sed0004354 (gene) Chayote v1

Overview
NameSed0004354
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG07: 10313630 .. 10314078 (+)
RNA-Seq ExpressionSed0004354
SyntenySed0004354
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTGGCTGCTAGAGGAGCAGCCAAGAAGAAAAAAGGAAAAAATGTCTGTGAAGAAGTCCTTCTCTCTATCGAAGGCCGACGAGGCCAAGCGTCCCGGGAAGCATGATGCTGCAAGAAAGCACAGGAGATCTTTCGATCGCTGCTTTTCAAACCCAGGGCCAACACTACCATTGGAAGAAGGGAAGTCTTTGAAAGAGATGGATCCAAAGAAGTTGAAGACTGGGATCCGGAAATGGGCAAAAGCCGTGGTGGCTTATGCCCGCCAAGTAAGCAATCGTTTCGGAAGCAGGCGTCGCTAATTGGACCGGATGATGCTCACATGGAATTCGACGACCATTAGAATAACTCTTATTATCTCTCCAACATGGGTATATTTTTTGTGAGAAGACGAAATCAAATTTGTTTCAATGGTGATACGTGCACGTTTTTTGGAGTCTTTGGTTGGGGG

mRNA sequence

CCTTGGCTGCTAGAGGAGCAGCCAAGAAGAAAAAAGGAAAAAATGTCTGTGAAGAAGTCCTTCTCTCTATCGAAGGCCGACGAGGCCAAGCGTCCCGGGAAGCATGATGCTGCAAGAAAGCACAGGAGATCTTTCGATCGCTGCTTTTCAAACCCAGGGCCAACACTACCATTGGAAGAAGGGAAGTCTTTGAAAGAGATGGATCCAAAGAAGTTGAAGACTGGGATCCGGAAATGGGCAAAAGCCGTGGTGGCTTATGCCCGCCAAGTAAGCAATCGTTTCGGAAGCAGGCGTCGCTAATTGGACCGGATGATGCTCACATGGAATTCGACGACCATTAGAATAACTCTTATTATCTCTCCAACATGGGTATATTTTTTGTGAGAAGACGAAATCAAATTTGTTTCAATGGTGATACGTGCACGTTTTTTGGAGTCTTTGGTTGGGGG

Coding sequence (CDS)

ATGTCTGTGAAGAAGTCCTTCTCTCTATCGAAGGCCGACGAGGCCAAGCGTCCCGGGAAGCATGATGCTGCAAGAAAGCACAGGAGATCTTTCGATCGCTGCTTTTCAAACCCAGGGCCAACACTACCATTGGAAGAAGGGAAGTCTTTGAAAGAGATGGATCCAAAGAAGTTGAAGACTGGGATCCGGAAATGGGCAAAAGCCGTGGTGGCTTATGCCCGCCAAGTAAGCAATCGTTTCGGAAGCAGGCGTCGCTAA

Protein sequence

MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKTGIRKWAKAVVAYARQVSNRFGSRRR
Homology
BLAST of Sed0004354 vs. NCBI nr
Match: KAG6575488.1 (hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKSFSL+KA+EAKRPG+HDAARK RRSFD CFS+  P LP+E GKSLKEMD +KLK 
Sbjct: 1  MSVKKSFSLTKAEEAKRPGRHDAARKRRRSFDLCFSS--PELPMEYGKSLKEMDSEKLKD 60

Query: 61 GIRKWAKAVVAYARQVSNRFGSRR 85
           IRKWAKAVVAYAR VSNRFGSRR
Sbjct: 61 AIRKWAKAVVAYARTVSNRFGSRR 82

BLAST of Sed0004354 vs. NCBI nr
Match: KAG6593505.1 (hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-24
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKS SL+KA+EAKR  +HDAARK RRSFD CFS+  P L +E GKSLKEMD +KLK+
Sbjct: 1  MSVKKSLSLTKAEEAKRSARHDAARKRRRSFDLCFSS--PKLQMERGKSLKEMDSEKLKS 60

Query: 61 GIRKWAKAVVAYARQVSNRFGSRRR 86
          GIRKWAK+VVAYARQVS+RFGS RR
Sbjct: 61 GIRKWAKSVVAYARQVSDRFGSWRR 83

BLAST of Sed0004354 vs. NCBI nr
Match: KAA0059447.1 (hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK03877.1 hypothetical protein E5676_scaffold347G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKS SL+KA+EAKR  +H+AARK RRSFD CFS   P LP+E GKSLKEM+ +KLKT
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSY--PELPMERGKSLKEMNSEKLKT 60

Query: 61 GIRKWAKAVVAYARQVSNRFGSRRR 86
          GI+KWAKAVVAYAR VS+RFGSRRR
Sbjct: 61 GIKKWAKAVVAYARTVSDRFGSRRR 83

BLAST of Sed0004354 vs. NCBI nr
Match: KGN45542.1 (hypothetical protein Csa_016865 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-23
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKS SL+KA+EAKR  +H+AARK RRSFD CFS   P +P+E GKSLKEM+ +KLKT
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSY--PEIPMERGKSLKEMNSEKLKT 60

Query: 61 GIRKWAKAVVAYARQVSNRFGSRRR 86
          GI+KWAKAVVAYAR VS+RFGSRRR
Sbjct: 61 GIKKWAKAVVAYARTVSDRFGSRRR 83

BLAST of Sed0004354 vs. NCBI nr
Match: KEH18277.1 (hypothetical protein MTR_8g015560 [Medicago truncatula] >RHN39221.1 hypothetical protein MtrunA17_Chr8g0341501 [Medicago truncatula])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKS S +     +   K  + +  RR FDRCFS+    + +EEGK LKEMD  KLK+
Sbjct: 1  MSVKKSLSFNGGSTIQNLKKEKSTK--RRRFDRCFSSV-EVVSMEEGKKLKEMDSNKLKS 60

Query: 61 GIRKWAKAVVAYARQVSNRFGS 83
           I+KWAKAVVAYARQVS RFGS
Sbjct: 61 EIKKWAKAVVAYARQVSARFGS 79

BLAST of Sed0004354 vs. ExPASy TrEMBL
Match: A0A5A7UXU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00720 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.3e-24
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKS SL+KA+EAKR  +H+AARK RRSFD CFS   P LP+E GKSLKEM+ +KLKT
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSY--PELPMERGKSLKEMNSEKLKT 60

Query: 61 GIRKWAKAVVAYARQVSNRFGSRRR 86
          GI+KWAKAVVAYAR VS+RFGSRRR
Sbjct: 61 GIKKWAKAVVAYARTVSDRFGSRRR 83

BLAST of Sed0004354 vs. ExPASy TrEMBL
Match: A0A0A0KB03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKS SL+KA+EAKR  +H+AARK RRSFD CFS   P +P+E GKSLKEM+ +KLKT
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSY--PEIPMERGKSLKEMNSEKLKT 60

Query: 61 GIRKWAKAVVAYARQVSNRFGSRRR 86
          GI+KWAKAVVAYAR VS+RFGSRRR
Sbjct: 61 GIKKWAKAVVAYARTVSDRFGSRRR 83

BLAST of Sed0004354 vs. ExPASy TrEMBL
Match: A0A072TLH5 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_8g015560 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.4e-12
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1  MSVKKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKT 60
          MSVKKS S +     +   K  + +  RR FDRCFS+    + +EEGK LKEMD  KLK+
Sbjct: 1  MSVKKSLSFNGGSTIQNLKKEKSTK--RRRFDRCFSSV-EVVSMEEGKKLKEMDSNKLKS 60

Query: 61 GIRKWAKAVVAYARQVSNRFGS 83
           I+KWAKAVVAYARQVS RFGS
Sbjct: 61 EIKKWAKAVVAYARQVSARFGS 79

BLAST of Sed0004354 vs. ExPASy TrEMBL
Match: A0A498IZM5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 0

Query: 4   KKSFSLSKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKLKTGIR 63
           +K+ SL+  +  K  G   AA++ R  FDRCFS     +  E GKSLKEMD +KLK+GI+
Sbjct: 25  RKTLSLNNGEAGKSSGDVVAAKRTR--FDRCFS--FMEVSTEPGKSLKEMDSEKLKSGIK 84

Query: 64  KWAKAVVAYARQVSNRFGSRR 85
           +WAKAVVAYARQVS+RFGS R
Sbjct: 85  RWAKAVVAYARQVSDRFGSSR 101

BLAST of Sed0004354 vs. ExPASy TrEMBL
Match: A0A067L8J0 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24809 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 1  MSVKKSFSL--SKADEAKRPGKHDAARKHRRSFDRCFSNPGPTLPLEEGKSLKEMDPKKL 60
          MSVKK+ SL  SK   A        + K RR F+RCFS+    +P+E GKSLKEMD  KL
Sbjct: 1  MSVKKTLSLNNSKNKNAVVKANRSVSSKSRR-FNRCFSS--MEIPVEPGKSLKEMDSFKL 60

Query: 61 KTGIRKWAKAVVAYARQVSNRFGSRR 85
          K  I++WAKAVVAYARQVS+RFGS R
Sbjct: 61 KAEIKRWAKAVVAYARQVSSRFGSSR 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575488.11.5e-2680.95hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6593505.18.8e-2475.29hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0059447.11.5e-2375.29hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK038... [more]
KGN45542.12.6e-2374.12hypothetical protein Csa_016865 [Cucumis sativus][more]
KEH18277.11.3e-1157.32hypothetical protein MTR_8g015560 [Medicago truncatula] >RHN39221.1 hypothetical... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXU07.3e-2475.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB031.2e-2374.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1[more]
A0A072TLH56.4e-1257.32Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_8g015560 PE=4 SV=1[more]
A0A498IZM51.9e-1156.79Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1[more]
A0A067L8J01.9e-1158.14Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24809 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availablePANTHERPTHR36484:SF2OS01G0558700 PROTEINcoord: 1..85
NoneNo IPR availablePANTHERPTHR36484OS01G0558700 PROTEINcoord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004354.1Sed0004354.1mRNA