Sed0003644 (gene) Chayote v1

Overview


Name	Sed0003644
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S12, chloroplastic
Location	LG13: 18539613 .. 18540602 (-)
RNA-Seq Expression	Sed0003644
Synteny	Sed0003644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTTGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTCCGTGTCAACAAACAATCTGAAATGCCTCGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATAAATCAAAAAGCCAAAATAAATGA

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATAAATCAAAAAGCCAAAATAAATGA

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATAAATCAAAAAGCCAAAATAAATGA

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYKSKSQNK

Homology

[Close]

BLAST of Sed0003644 vs. NCBI nr
Match: RZC88934.1 (hypothetical protein C5167_030630 [Papaver somniferum])

HSP 1 Score: 292.7 bits (748), Expect = 2.5e-75
Identity = 162/206 (78.64%), Postives = 162/206 (78.64%), Query Frame = 0


Query: 31  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 90
           MTSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 91  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL------- 150
           YIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL       
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 151 -----------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 207
                                  ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 180

[Close]

BLAST of Sed0003644 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.3 bits (721), Expect = 3.3e-72
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of Sed0003644 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-67
Identity = 137/143 (95.80%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of Sed0003644 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-66
Identity = 136/143 (95.10%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLS+
Sbjct: 1   MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP VRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of Sed0003644 vs. NCBI nr
Match: RZC70923.1 (hypothetical protein C5167_034128 [Papaver somniferum])

HSP 1 Score: 257.7 bits (657), Expect = 8.8e-65
Identity = 143/185 (77.30%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 31  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 90
           MTSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 91  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL------- 150
           YIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL       
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 151 -----------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 186
                                  ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 176

[Close]

BLAST of Sed0003644 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.1e-45
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 46  SCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVV 105
           +CT + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVV
Sbjct: 33  TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVV 92

Query: 106 LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP 148
           LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS   +  P
Sbjct: 93  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSQYGVKKP 134

[Close]

BLAST of Sed0003644 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-38
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 55  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 114
           +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 115 LPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP 148
           LPGVRYHIVRGTLDAVGVKDRQQGRS   +  P
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRSKYGVKKP 123

[Close]

BLAST of Sed0003644 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.3e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Sed0003644 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.3e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Sed0003644 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.3e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Sed0003644 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.6e-72
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of Sed0003644 vs. ExPASy TrEMBL
Match: A0A4Y7KC21 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_034128 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.2e-65
Identity = 143/185 (77.30%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 31  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 90
           MTSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 91  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL------- 150
           YIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL       
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 151 -----------------------ISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 186
                                  ISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 176

[Close]

BLAST of Sed0003644 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.5e-65
Identity = 133/142 (93.66%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]

BLAST of Sed0003644 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 4.4e-62
Identity = 129/142 (90.85%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVLVRGG VKDLPGVRYH
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYH 199

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTL A+GVKDRQQGRSSAL
Sbjct: 200 IVRGTLYAIGVKDRQQGRSSAL 220

[Close]

BLAST of Sed0003644 vs. ExPASy TrEMBL
Match: A0A443Q5I9 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02780500 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.8e-60
Identity = 127/142 (89.44%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]

BLAST of Sed0003644 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 157.9 bits (398), Expect = 8.8e-39
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSALISNP 148
           RGTLDAVGVKDRQQGRS   +  P
Sbjct: 99  RGTLDAVGVKDRQQGRSKYGVKKP 122

[Close]

BLAST of Sed0003644 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 157.9 bits (398), Expect = 8.8e-39
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSALISNP 148
           RGTLDAVGVKDRQQGRS   +  P
Sbjct: 99  RGTLDAVGVKDRQQGRSKYGVKKP 122

[Close]

BLAST of Sed0003644 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 157.9 bits (398), Expect = 8.8e-39
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSALISNP 148
           RGTLDAVGVKDRQQGRS   +  P
Sbjct: 99  RGTLDAVGVKDRQQGRSKYGVKKP 122

[Close]

BLAST of Sed0003644 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 63  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 122
           ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 123 VRGTLDAVGVKDRQQGRS 141
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of Sed0003644 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 63  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 122
           ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 123 VRGTLDAVGVKDRQQGRS 141
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of Sed0003644 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC88934.1	2.5e-75	78.64	hypothetical protein C5167_030630 [Papaver somniferum]	[more]
XP_022932068.1	3.3e-72	100.00	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038896566.1	1.1e-67	95.80	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038902483.1	1.6e-66	95.10	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
RZC70923.1	8.8e-65	77.30	hypothetical protein C5167_034128 [Papaver somniferum]	[more]

BLAST of Sed0003644 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	6.1e-45	89.22	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	1.5e-38	86.02	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q1KXY0	7.3e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	7.3e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	7.3e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]

BLAST of Sed0003644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	1.6e-72	100.00	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A4Y7KC21	4.2e-65	77.30	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_034128 PE=3 SV=1	[more]
A0A3S3NSS0	9.5e-65	93.66	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6A5N1Q8	4.4e-62	90.85	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A443Q5I9	1.8e-60	89.44	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]

BLAST of Sed0003644 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	8.8e-39	92.86	ribosomal protein S12A	[more]
ATCG01230.1	8.8e-39	92.86	ribosomal protein S12B	[more]
ATCG00905.1	8.8e-39	92.86	ribosomal protein S12C	[more]
AT2G07675.1	1.2e-22	62.82	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	1.2e-22	62.82	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 119..135 score: 64.3 coord: 83..102 score: 75.14 coord: 135..147 score: 38.25 coord: 67..82 score: 91.32 coord: 102..119 score: 88.58
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 58..138 e-value: 1.4E-29 score: 102.0
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 33..143
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 68..75
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 51..141 e-value: 3.7E-46 score: 154.0
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 64..135 e-value: 5.07844E-54 score: 166.54
None	No IPR available	GENE3D	2.40.50.140		coord: 11..157 e-value: 7.7E-47 score: 160.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 33..143
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 60..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003644.1	Sed0003644.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome