Sed0002950 (gene) Chayote v1

Overview


Name	Sed0002950
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L13
Location	LG05: 4335674 .. 4337966 (+)
RNA-Seq Expression	Sed0002950
Synteny	Sed0002950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAACGAAGAGACTGGAACTACAGAAGGGGCGCGTGAGAGAAGAAAGGTTCGTTTCAATTCTGATTTGGATTCTTTGTATTACCTTCTTCTGCAGATTTGATCTTGATCTCCATTTCTCATAAGCTGTACAATGTTAGATTAGGGTTTTTAGCTCCTCATTTGCCAGTCCTGCTTTAGCTGTTTAGAGGAATTGTTTGAGTTTTTAGGAATTCCATGAATTATGGAAGTAACGTTTCAGCTTGTGGTTTTAATTCGAGGGATTTTGTCATCTGTTTCAATCGTTTTCGCTTAGGGTTTTGTTTTGCGGTAGTTGTTGGAAATTTTGTGTTCGTGTTAGCCCTAAATGGGTAGAATTAAGCTTGATGTATTTGTATCGCTGTGTTGAATGGAACTTATCTGGATCGATGTTACACATCTACCAAGTTTGTATTTTGTGACAATACAGAACATGGATGAGGTTTTTGGTTTTTGGGTTTGAATTTGCTAAATTTAATGATTAAGCAGGTAAGCCATGAAGCATAATAATGTTATCCCGAGTTCGCACTTTAGGAAGCATTGGCAGAATTATGTTAGAACTTGGTTCAACCAACCTGCTCGGAAAACAAAGAGAAGGAATGGTGAGTACCTGGGTTTTCTGATCCAACATCCGTGGTTAAATTTTTATTGTATTATTCGTACTGATATTGGATTCTCATGTGTGAATTGTCTCTAGCTCGTCAGGCAAAGGCTGTGAAAGCTTTCCCTCGGCCTACTGCTGGACCGCTTCGACCTATTGTTCACGGACAGACATTGAAGTATAACATGAAAGTGAGAGCTGGTAGAGGATTTTCTTTGGAAGAATTGAAGGTGAGATTATTTTTCAGCTTTTTGAATTTTTGGATGGGAATGTTCATATTTAATTAAGTTAGGCTCTGTTTGACAACCATTTGGTTTTTGAAATTTAAGCCTATAACTACTTTACCATTTACCATGTATTTTTTCTTATATCTACACCTTACCTATATTTGTAGAAACCAAACCAAAATTTGGAGAAAAAAAAGTAGCTTTCAAAAGGTTGTTTTTGTTTTCGATAGTTGGTTGGCATTCATATATTTTCTTAAGAAAAGAATACATTGTTGGAAATGTGGAACACATGGTAGGAAATTTGAGTAAAGAATATGCTTAAATTTAAAAAATCATAAACAAAAAACAGGATGTTATCATACAGGGCCTTAATTATGTGTTTTGTTTTTTCAAAAGATAAGTAAATCATGTTTTTCGAATATTAAACGAACCGAAGCTTTATTTTTAAATCTTGGTTTTTGTTGCATGATTTGTGCTTTTGGTTGAATAGAGTTTTTTTTTTGGAAGTCATATGATTATGTCATGGAGACATCAAGTTAATTATCTGAAATATCTGCACGGTTATGATTGCCAATTTAGATCTTATCTAGAAGTACGATAAATTTTTCACATTTTGATGATCGTTTGTATTACATGGAGATCAAATCATTCCTCTGGTTGATACTTTTTGAGATTGATAAACTTTTCATAAACCAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTGCAGAGGTTGAAGACTTACAAGGCCAAGGTGGTCGTTTTCCCACGACGTGCCTGCAAGTTTAAGGTTAGACTTTCAAGTTCCAAATGCCAAAACGATACGTTTCTGTTGATGGGACTGCCTTGATCACTGATCATTTACGTTTATGTTGATGTAGGCTGGTGATTCTACACCTGAGGAACTGGCAACTGCTACCCAGGTCCAAGGCTCCTACATGTCTATTGGACGAGAGAAGCCATCAGTTGAGCTTGTGAAGGTCTCAGAAGAGATGAAATCCTTCAAAGCCTACGACAAGCTTCGCATTGAGCGAACAAATGCTCGCCACATCGGTGCTCGGTTGAAGAGGGCAGCTGAGGCGGAGAAGGAAGAGAAGAAGTAAATGGTTCCAAGCTTGACTGTTTGTTTGCCCATATGTTTTGAATGAAAGTTCAAGTTAGCAGTGTTTCGCCATTTAAATTTAGTATCTTTTTTCCCTACTTCATCTGTTGTGCAAACCTGAGTTTTGAGTTCAATTTTGAAATGATTAGAGATTATTTTTATGATGCAAATCAAACATACTCTGCTGATTTTGGTTTTTTCTTCTTATTCATGCATTATCATTAGAGGCTATTTTGTGGCTACGCAACTTGAATGATTGAAATACACTAATAGTTCCTA

mRNA sequence

GAAGAAACGAAGAGACTGGAACTACAGAAGGGGCGCGTGAGAGAAGAAAGCAGGTAAGCCATGAAGCATAATAATGTTATCCCGAGTTCGCACTTTAGGAAGCATTGGCAGAATTATGTTAGAACTTGGTTCAACCAACCTGCTCGGAAAACAAAGAGAAGGAATGCTCGTCAGGCAAAGGCTGTGAAAGCTTTCCCTCGGCCTACTGCTGGACCGCTTCGACCTATTGTTCACGGACAGACATTGAAGTATAACATGAAAGTGAGAGCTGGTAGAGGATTTTCTTTGGAAGAATTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTGCAGAGGTTGAAGACTTACAAGGCCAAGGTGGTCGTTTTCCCACGACGTGCCTGCAAGTTTAAGGCTGGTGATTCTACACCTGAGGAACTGGCAACTGCTACCCAGGTCCAAGGCTCCTACATGTCTATTGGACGAGAGAAGCCATCAGTTGAGCTTGTGAAGGTCTCAGAAGAGATGAAATCCTTCAAAGCCTACGACAAGCTTCGCATTGAGCGAACAAATGCTCGCCACATCGGTGCTCGGTTGAAGAGGGCAGCTGAGGCGGAGAAGGAAGAGAAGAAGTAAATGGTTCCAAGCTTGACTGTTTGTTTGCCCATATGTTTTGAATGAAAGTTCAAGTTAGCAGTGTTTCGCCATTTAAATTTAGTATCTTTTTTCCCTACTTCATCTGTTGTGCAAACCTGAGTTTTGAGTTCAATTTTGAAATGATTAGAGATTATTTTTATGATGCAAATCAAACATACTCTGCTGATTTTGGTTTTTTCTTCTTATTCATGCATTATCATTAGAGGCTATTTTGTGGCTACGCAACTTGAATGATTGAAATACACTAATAGTTCCTA

Coding sequence (CDS)

ATGAAGCATAATAATGTTATCCCGAGTTCGCACTTTAGGAAGCATTGGCAGAATTATGTTAGAACTTGGTTCAACCAACCTGCTCGGAAAACAAAGAGAAGGAATGCTCGTCAGGCAAAGGCTGTGAAAGCTTTCCCTCGGCCTACTGCTGGACCGCTTCGACCTATTGTTCACGGACAGACATTGAAGTATAACATGAAAGTGAGAGCTGGTAGAGGATTTTCTTTGGAAGAATTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTGCAGAGGTTGAAGACTTACAAGGCCAAGGTGGTCGTTTTCCCACGACGTGCCTGCAAGTTTAAGGCTGGTGATTCTACACCTGAGGAACTGGCAACTGCTACCCAGGTCCAAGGCTCCTACATGTCTATTGGACGAGAGAAGCCATCAGTTGAGCTTGTGAAGGTCTCAGAAGAGATGAAATCCTTCAAAGCCTACGACAAGCTTCGCATTGAGCGAACAAATGCTCGCCACATCGGTGCTCGGTTGAAGAGGGCAGCTGAGGCGGAGAAGGAAGAGAAGAAGTAA

Protein sequence

MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKLRIERTNARHIGARLKRAAEAEKEEKK

Homology

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BLAST of Sed0002950 vs. NCBI nr
Match: XP_008467320.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 3.0e-102
Identity = 194/206 (94.17%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQGSYM IG EKPSVELVKV+E+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ER NARH+GARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. NCBI nr
Match: XP_022958723.1 (60S ribosomal protein L13-3-like [Cucurbita moschata])

HSP 1 Score: 381.7 bits (979), Expect = 4.0e-102
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQGSYMSIG EK  VELVKV+EEMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTNARH+GARLKRAAEAEKEEKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. NCBI nr
Match: XP_004143667.1 (60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protein L13-3-like [Cucumis melo var. makuwa] >KGN50340.1 hypothetical protein Csa_000560 [Cucumis sativus])

HSP 1 Score: 381.7 bits (979), Expect = 4.0e-102
Identity = 193/206 (93.69%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQGSYM IG EKPSVELVK++E+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ER NARH+GARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. NCBI nr
Match: XP_022929155.1 (60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical protein SDJN03_24090, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017097.1 hypothetical protein SDJN02_22209 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 381.7 bits (979), Expect = 4.0e-102
Identity = 194/206 (94.17%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQG YMSIG EKPSVELVK++E++KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           RIERTNARH+GARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. NCBI nr
Match: XP_023550831.1 (60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 6.7e-102
Identity = 193/206 (93.69%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQG YMSIG EKPSVELVK++E++KSFKAYDK+
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           RIERTNARH+GARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.7e-92
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+KHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPRRA K KAGDSTPEELA ATQVQG Y+ I REKP++ELVK++ EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.5e-91
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSSHFRKHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+VVFPRR+ + KAGDSTPEELA ATQVQG YM I   K ++ELVK++ ++K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTNARH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy Swiss-Prot
Match: P41128 (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.7e-90
Identity = 166/206 (80.58%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+KHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELK+AGIPKK APTIGIAVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPRRA K KAGDST EELA ATQVQG YM I REK + ELVK++ EMKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.1e-90
Identity = 165/206 (80.10%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+KHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGI++DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPRRA K KAGDST EELA ATQVQG YM I REK ++ELVK++ EMKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy Swiss-Prot
Match: Q9SMT4 (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.1e-78
Identity = 148/206 (71.84%), Postives = 170/206 (82.52%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+K W+NYV+T FNQPA KT+RR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKK APTIGI+VDH R+NRSLE  Q NVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPR A   K GDS  +ELA ATQVQ  +M I RE P++ELVK++ +MK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+E  N RH G R KRAAEAEKEEKK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy TrEMBL
Match: A0A1S3CTG8 (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.5e-102
Identity = 194/206 (94.17%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQGSYM IG EKPSVELVKV+E+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ER NARH+GARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy TrEMBL
Match: A0A5A7UNR2 (60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00250 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 193/206 (93.69%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQGSYM IG EKPSVELVK++E+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ER NARH+GARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy TrEMBL
Match: A0A0A0KKX2 (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 193/206 (93.69%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVKAFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQGSYM IG EKPSVELVK++E+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ER NARH+GARLK+AAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy TrEMBL
Match: A0A6J1ETG8 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 194/206 (94.17%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQG YMSIG EKPSVELVK++E++KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           RIERTNARH+GARLKRAAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. ExPASy TrEMBL
Match: A0A6J1H3W1 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111459864 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYVRTWFNQPARKT+RRNARQ KAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           KVVVFPRRA KFKAGDSTPEELATATQVQGSYMSIG EK  VELVKV+EEMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTNARH+GARLKRAAEAEKEEKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-93
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+KHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPRRA K KAGDSTPEELA ATQVQG Y+ I REKP++ELVK++ EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-93
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+KHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPRRA K KAGDSTPEELA ATQVQG Y+ I REKP++ELVK++ EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-93
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+KHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPRRA K KAGDSTPEELA ATQVQG Y+ I REKP++ELVK++ EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein )

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-92
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSSHFRKHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+VVFPRR+ + KAGDSTPEELA ATQVQG YM I   K ++ELVK++ ++K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTNARH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Sed0002950 vs. TAIR 10
Match: AT3G49010.4 (breast basic conserved 1 )

HSP 1 Score: 334.0 bits (855), Expect = 8.8e-92
Identity = 167/206 (81.07%), Postives = 186/206 (90.29%), Query Frame = 0


Query: 1   MKHNNVIPSSHFRKHWQNYVRTWFNQPARKTKRRNARQAKAVKAFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+ HF+KHWQNYV+TWFNQPARKT+RR ARQ KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRACKFKAGDSTPEELATATQVQGSYMSIGREKPSVELVKVSEEMKSFKAYDKL 180
           K+V+FPRRA   KAGDSTPEELA ATQVQG Y+ I REKP++ELVK++ EMKSFKA+DK+
Sbjct: 121 KLVIFPRRA--RKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERTNARHIGARLKRAAEAEKEEKK 207
           R+ERTN RH GAR KRAAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 204

The following BLAST results are available for this feature:

BLAST of Sed0002950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467320.1	3.0e-102	94.17	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]	[more]
XP_022958723.1	4.0e-102	94.66	60S ribosomal protein L13-3-like [Cucurbita moschata]	[more]
XP_004143667.1	4.0e-102	93.69	60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protei...	[more]
XP_022929155.1	4.0e-102	94.17	60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical...	[more]
XP_023550831.1	6.7e-102	93.69	60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0002950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41127	1.7e-92	81.55	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
Q9FF90	2.5e-91	81.07	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
P41128	4.7e-90	80.58	60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P41129	6.1e-90	80.10	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q9SMT4	7.1e-78	71.84	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C P...	[more]

BLAST of Sed0002950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CTG8	1.5e-102	94.17	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1	[more]
A0A5A7UNR2	1.9e-102	93.69	60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KKX2	1.9e-102	93.69	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1	[more]
A0A6J1ETG8	1.9e-102	94.17	60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=...	[more]
A0A6J1H3W1	1.9e-102	94.66	60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111459864 PE=3 SV=...	[more]

BLAST of Sed0002950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49010.1	1.2e-93	81.55	breast basic conserved 1	[more]
AT3G49010.2	1.2e-93	81.55	breast basic conserved 1	[more]
AT3G49010.3	1.2e-93	81.55	breast basic conserved 1	[more]
AT5G23900.1	1.8e-92	81.07	Ribosomal protein L13e family protein	[more]
AT3G49010.4	8.8e-92	81.07	breast basic conserved 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.110		coord: 166..206 e-value: 5.7E-14 score: 53.9
None	No IPR available	PANTHER	PTHR11722:SF11	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..184 e-value: 3.6E-77 score: 258.3
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 44..127 score: 21.837742
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002950.1	Sed0002950.1	mRNA
Sed0002950.2	Sed0002950.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome