Sed0002888 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTCTTCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTGAGCTATGTCGATGTGAAAAATGGAGGTTGTTGATATTGCAGCCCTCAATAATACCTCTATTTTGCGCGTCCACAAGAATGTTAGACAAATAGTCCATAGCCAACACAAATAAAATTGGGGATAGAGGGTCTCCTTGATGAATCCCACGCTAGGCGCGGATATACGACATCTAGGTTTCCTATTCACCATAATTGAATATCTAATAGAGGAAATGTAAGAATGTATCCAGGCAATCCAAGCGTTGTTGAAAGCTTTAAGTTTCAAAACAGCAAGCGAATGAAATAACAATTGATAATGTCGAACGCTTTCTCAATATCCAGTTTAAGAATGACCCTACTCAACTTTCTAACTCTCCAAAAATCAGCCGCCTCATTAGCAATTAACACAACATCGGTGATCTGTCTACAAAAACAAAAGCACGCTGGGGATGAGCCACTCATGCATGGAAGAACCAATTTTAACATTTCTGCCAAAACTTTTGAGAGAATTTTGTAAAAATTCGTGGTCAGGCTTATAGGCCTAAAATCAGGGACTTTATTGAGGGCTTGATGACCTTAGGGATGAGAGCCACATATGTTTTGTTAATAGCACGGTTGATAATGCCCGTGTAGAAAAAGTCCTGGAACAAATGCATGATGTTTGGTTTTAAAACGTTCCAATGTTTTTTAAAGACTTCGATTGTGAACCCATCGGGACCCATAGATTTATTAGAACCAATCTTCTTAATGAAATCATAAACCTCATGTTCCAAAAAATTCTTGCAAAAAGAATCAGCTTGAATAGAAGAGATGGGTCTTAAGTCAATGTTGGTGATCATCCATCTATCGGTGGGACAAACATCAAATATGTCTCAATAGCACAATCTGTGACACAACTATTACCATATTCATCGATCTATTCAGAAATTAAAGCATAATGCTTTTTGGCCGAACAAACTTTGTGAAAAAAAGTTATTTTATGGAATATTTGTTTCCATAAATTTAGATTATATATATATATATATATATATATATATATATATTTGAGAATATTATAACTTTTCGAACTGTTCGTTTTGGTTTTAGATATAACTAAGTTAGAATAAAAGGTATTGATTTAGATATGCTTGATTCTAATACAGAGAAGTTTATGTTTGATTATTCACCTTGCATACAGTTTGACTCGACAAATAGAATAAATAAGAGAATAACTTTTTCGTGTTTGCAACAAGTAGGAAAAAAATATCTTCTATAAAAAGAAAAATAAATAAAATAGTATTATAATATAGTTAATTAAATGTTGTTTATTATTTATTTCAAATTAGTAAATTTTGAATGAAAATAGCACATACTTTTTGTTAAAATATATCTGAAAATATGTGTTTTTTGTATTTATCAATCTTGAATTAGATTTCAATTTCATTAGACCAATATCATATTAGAGAATATGGGTTCCACCTCAAAATCAATTAGTAATAAAGGAAGTAACGCATATTTCTTTTATATTGACATTGGACCCTCTTACTTTTAAAGTAAGACATTTGTGAATCCTAACAAAATATAGCTAATTTTAAAAAAATTGTACTACTAACTTAAGAAAATGAATTTATTGTAAAAAAGAATAGATATCTGTATAATAAGTAACCTAGAAATTAGATGACATAGTTGTCTAGTAACATTATCGAAGTTATCCAATGACCAAAAGATTATAGGTTCGAGTTCCATACCTTCAATCATCTAGTACACAAGGAATAAATAACCAAAAAAATTATATCTTTTTTTCAATTAAATTCTCATTTTCATAATACATAACTTTTTTAAAAATTCAAACAAATATACATAAACACACACAGATATATACATAAACATGCGCACACACATACATATATACATACATATATATTCAAGAGATTATATATTTTGATTTGATGTAGAAACTACCTACCTCATATGCCAACCGTAACTTATCCCAAGAAATGAATTTGGAGATTGAACCATAGACGTTGGAGATAATTATTTCTCTTTTCTATTAAACTGTGTTCAAATTAATCTTAAAATGCTAATATATAACAATTAGTAGGTTCATAAAAAGATCTGTTTCAAAAAAAAAAGTAGGTTCATAAAAAGATTGCATTCTCTAAATTCACAAACCTTCTTAATTCATATTTATTTATTTGAGTCATGCTCTTTTTTTCCAATATAATGGAAGGTTGGTTGAGGGACTCAAACCAACCGAGTAGTTTCTAATTCATTCCATATATCAATTGAGGAACAAAATTTAAACGTTTTTAAAACAAAATATAGTTTTTTTATATTAATAATATATTAGTATGATATATATATTAAAACAATTTTTGTGATAAGTATATAAAAATCAGCTTTTAAAAGGCTTTTGACTCACACCCACCCCTTATTTTTGCATTACATGTTTCCCACAAATATCAAAAAGGTTATTGGACAAACTTCACCATGAAATGCAAATACTGAAAAGCCATTGGTTAGGTTTCTTATGAAATCACATGGTCCCTCTATTTCCCACTTATGTTTCTTCCACTATTGCATGTTTCTCTCTATTCTCTTTCCCTCCCACATTGACCAAAAAAAAACATTCTAAGGAATATTTATAAAGGTTATCTATCCTAATGGTAAAAAAAAAAGGGCAAAAGGAGTTCATTCAAAGACATAAAAGCATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTTCTCCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTCGAGCTACGTCGACGATCCCTTGCAACAACTCCATAGTCGAGGGTGATAGGGAGGTGGAGACGCTAATGGAGTCCAAGATAAATCGAAGGTTTCTTGAACAACAAAAGAAATACATCTCCACTGGAGCATTAAAAAGGAACCAACCCGCATGCGATGGTAATAATAGCGCCAACCTTACACCAAAAGTGGAAGCTGTACTCCGCCATCGGCAAATACTTACAATCGAGTTTGCTCTAAAACATATCGATGTAGGTCTGATGATTGA ATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTCTTCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTGAGCTATATCTTCATCTCCTTCGAGCTACGTCGACGATCCCTTGCAACAACTCCATAGTCGAGGGTGATAGGGAGGTGGAGACGCTAATGGAGTCCAAGATAAATCGAAGGTTTCTTGAACAACAAAAGAAATACATCTCCACTGGACGCCAACCTTACACCAAAAGTGGAAGCTGTACTCCGCCATCGGCAAATACTTACAATCGAGTTTGCTCTAAAACATATCGATGTAGGTCTGATGATTGA ATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTCTTCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTGAGCTATATCTTCATCTCCTTCGAGCTACGTCGACGATCCCTTGCAACAACTCCATAGTCGAGGGTGATAGGGAGGTGGAGACGCTAATGGAGTCCAAGATAAATCGAAGGTTTCTTGAACAACAAAAGAAATACATCTCCACTGGACGCCAACCTTACACCAAAAGTGGAAGCTGTACTCCGCCATCGGCAAATACTTACAATCGAGTTTGCTCTAAAACATATCGATGTAGGTCTGATGATTGA MRRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLMESKINRRFLEQQKKYISTGRQPYTKSGSCTPPSANTYNRVCSKTYRCRSDD Homology
BLAST of Sed0002888 vs. NCBI nr
Match: XP_022138047.1 (protein RALF-like 32 [Momordica charantia]) HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23 Identity = 74/125 (59.20%), Postives = 81/125 (64.80%), Query Frame = 0
BLAST of Sed0002888 vs. NCBI nr
Match: KAA0067637.1 (protein RALF-like 32 [Cucumis melo var. makuwa] >TYK23639.1 protein RALF-like 32 [Cucumis melo var. makuwa]) HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23 Identity = 75/125 (60.00%), Postives = 84/125 (67.20%), Query Frame = 0
BLAST of Sed0002888 vs. NCBI nr
Match: XP_004147646.3 (protein RALF-like 32 [Cucumis sativus]) HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22 Identity = 73/124 (58.87%), Postives = 80/124 (64.52%), Query Frame = 0
BLAST of Sed0002888 vs. NCBI nr
Match: XP_038900965.1 (protein RALF-like 32 [Benincasa hispida]) HSP 1 Score: 111.3 bits (277), Expect = 5.4e-21 Identity = 72/125 (57.60%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Sed0002888 vs. NCBI nr
Match: KAE8650417.1 (hypothetical protein Csa_010756 [Cucumis sativus]) HSP 1 Score: 100.9 bits (250), Expect = 7.3e-18 Identity = 56/92 (60.87%), Postives = 61/92 (66.30%), Query Frame = 0
BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A6J1C9Y4 (protein RALF-like 32 OS=Momordica charantia OX=3673 GN=LOC111009304 PE=3 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23 Identity = 74/125 (59.20%), Postives = 81/125 (64.80%), Query Frame = 0
BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A5A7VKE5 (Protein RALF-like 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00040 PE=3 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23 Identity = 75/125 (60.00%), Postives = 84/125 (67.20%), Query Frame = 0
BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A0A0L9A8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171840 PE=3 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22 Identity = 72/124 (58.06%), Postives = 79/124 (63.71%), Query Frame = 0
BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A6J1GXB3 (protein RALF-like 32 OS=Cucurbita moschata OX=3662 GN=LOC111458002 PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17 Identity = 60/107 (56.07%), Postives = 65/107 (60.75%), Query Frame = 0
BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A650EQP6 (Rapid alkalinization factor 18 OS=Pyrus x bretschneideri OX=225117 GN=RALF18 PE=2 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12 Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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