Sed0002888 (gene) Chayote v1

Overview


Name	Sed0002888
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RALF-like 32
Location	LG02: 48213937 .. 48217052 (+)
RNA-Seq Expression	Sed0002888
Synteny	Sed0002888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTCTTCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTGAGCTATGTCGATGTGAAAAATGGAGGTTGTTGATATTGCAGCCCTCAATAATACCTCTATTTTGCGCGTCCACAAGAATGTTAGACAAATAGTCCATAGCCAACACAAATAAAATTGGGGATAGAGGGTCTCCTTGATGAATCCCACGCTAGGCGCGGATATACGACATCTAGGTTTCCTATTCACCATAATTGAATATCTAATAGAGGAAATGTAAGAATGTATCCAGGCAATCCAAGCGTTGTTGAAAGCTTTAAGTTTCAAAACAGCAAGCGAATGAAATAACAATTGATAATGTCGAACGCTTTCTCAATATCCAGTTTAAGAATGACCCTACTCAACTTTCTAACTCTCCAAAAATCAGCCGCCTCATTAGCAATTAACACAACATCGGTGATCTGTCTACAAAAACAAAAGCACGCTGGGGATGAGCCACTCATGCATGGAAGAACCAATTTTAACATTTCTGCCAAAACTTTTGAGAGAATTTTGTAAAAATTCGTGGTCAGGCTTATAGGCCTAAAATCAGGGACTTTATTGAGGGCTTGATGACCTTAGGGATGAGAGCCACATATGTTTTGTTAATAGCACGGTTGATAATGCCCGTGTAGAAAAAGTCCTGGAACAAATGCATGATGTTTGGTTTTAAAACGTTCCAATGTTTTTTAAAGACTTCGATTGTGAACCCATCGGGACCCATAGATTTATTAGAACCAATCTTCTTAATGAAATCATAAACCTCATGTTCCAAAAAATTCTTGCAAAAAGAATCAGCTTGAATAGAAGAGATGGGTCTTAAGTCAATGTTGGTGATCATCCATCTATCGGTGGGACAAACATCAAATATGTCTCAATAGCACAATCTGTGACACAACTATTACCATATTCATCGATCTATTCAGAAATTAAAGCATAATGCTTTTTGGCCGAACAAACTTTGTGAAAAAAAGTTATTTTATGGAATATTTGTTTCCATAAATTTAGATTATATATATATATATATATATATATATATATATATTTGAGAATATTATAACTTTTCGAACTGTTCGTTTTGGTTTTAGATATAACTAAGTTAGAATAAAAGGTATTGATTTAGATATGCTTGATTCTAATACAGAGAAGTTTATGTTTGATTATTCACCTTGCATACAGTTTGACTCGACAAATAGAATAAATAAGAGAATAACTTTTTCGTGTTTGCAACAAGTAGGAAAAAAATATCTTCTATAAAAAGAAAAATAAATAAAATAGTATTATAATATAGTTAATTAAATGTTGTTTATTATTTATTTCAAATTAGTAAATTTTGAATGAAAATAGCACATACTTTTTGTTAAAATATATCTGAAAATATGTGTTTTTTGTATTTATCAATCTTGAATTAGATTTCAATTTCATTAGACCAATATCATATTAGAGAATATGGGTTCCACCTCAAAATCAATTAGTAATAAAGGAAGTAACGCATATTTCTTTTATATTGACATTGGACCCTCTTACTTTTAAAGTAAGACATTTGTGAATCCTAACAAAATATAGCTAATTTTAAAAAAATTGTACTACTAACTTAAGAAAATGAATTTATTGTAAAAAAGAATAGATATCTGTATAATAAGTAACCTAGAAATTAGATGACATAGTTGTCTAGTAACATTATCGAAGTTATCCAATGACCAAAAGATTATAGGTTCGAGTTCCATACCTTCAATCATCTAGTACACAAGGAATAAATAACCAAAAAAATTATATCTTTTTTTCAATTAAATTCTCATTTTCATAATACATAACTTTTTTAAAAATTCAAACAAATATACATAAACACACACAGATATATACATAAACATGCGCACACACATACATATATACATACATATATATTCAAGAGATTATATATTTTGATTTGATGTAGAAACTACCTACCTCATATGCCAACCGTAACTTATCCCAAGAAATGAATTTGGAGATTGAACCATAGACGTTGGAGATAATTATTTCTCTTTTCTATTAAACTGTGTTCAAATTAATCTTAAAATGCTAATATATAACAATTAGTAGGTTCATAAAAAGATCTGTTTCAAAAAAAAAAGTAGGTTCATAAAAAGATTGCATTCTCTAAATTCACAAACCTTCTTAATTCATATTTATTTATTTGAGTCATGCTCTTTTTTTCCAATATAATGGAAGGTTGGTTGAGGGACTCAAACCAACCGAGTAGTTTCTAATTCATTCCATATATCAATTGAGGAACAAAATTTAAACGTTTTTAAAACAAAATATAGTTTTTTTATATTAATAATATATTAGTATGATATATATATTAAAACAATTTTTGTGATAAGTATATAAAAATCAGCTTTTAAAAGGCTTTTGACTCACACCCACCCCTTATTTTTGCATTACATGTTTCCCACAAATATCAAAAAGGTTATTGGACAAACTTCACCATGAAATGCAAATACTGAAAAGCCATTGGTTAGGTTTCTTATGAAATCACATGGTCCCTCTATTTCCCACTTATGTTTCTTCCACTATTGCATGTTTCTCTCTATTCTCTTTCCCTCCCACATTGACCAAAAAAAAACATTCTAAGGAATATTTATAAAGGTTATCTATCCTAATGGTAAAAAAAAAAGGGCAAAAGGAGTTCATTCAAAGACATAAAAGCATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTTCTCCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTCGAGCTACGTCGACGATCCCTTGCAACAACTCCATAGTCGAGGGTGATAGGGAGGTGGAGACGCTAATGGAGTCCAAGATAAATCGAAGGTTTCTTGAACAACAAAAGAAATACATCTCCACTGGAGCATTAAAAAGGAACCAACCCGCATGCGATGGTAATAATAGCGCCAACCTTACACCAAAAGTGGAAGCTGTACTCCGCCATCGGCAAATACTTACAATCGAGTTTGCTCTAAAACATATCGATGTAGGTCTGATGATTGA

mRNA sequence

ATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTCTTCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTGAGCTATATCTTCATCTCCTTCGAGCTACGTCGACGATCCCTTGCAACAACTCCATAGTCGAGGGTGATAGGGAGGTGGAGACGCTAATGGAGTCCAAGATAAATCGAAGGTTTCTTGAACAACAAAAGAAATACATCTCCACTGGACGCCAACCTTACACCAAAAGTGGAAGCTGTACTCCGCCATCGGCAAATACTTACAATCGAGTTTGCTCTAAAACATATCGATGTAGGTCTGATGATTGA

Coding sequence (CDS)

ATGAGAAGAAGAATCTCAAGCAAGCCAATTTCTTTACAACCATTTTTTCTTCATCTCCTTCTCTTTTTCCTCCAAGATCTTCATCTCCTTGAGCTATATCTTCATCTCCTTCGAGCTACGTCGACGATCCCTTGCAACAACTCCATAGTCGAGGGTGATAGGGAGGTGGAGACGCTAATGGAGTCCAAGATAAATCGAAGGTTTCTTGAACAACAAAAGAAATACATCTCCACTGGACGCCAACCTTACACCAAAAGTGGAAGCTGTACTCCGCCATCGGCAAATACTTACAATCGAGTTTGCTCTAAAACATATCGATGTAGGTCTGATGATTGA

Protein sequence

MRRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLMESKINRRFLEQQKKYISTGRQPYTKSGSCTPPSANTYNRVCSKTYRCRSDD

Homology

[Close]

BLAST of Sed0002888 vs. NCBI nr
Match: XP_022138047.1 (protein RALF-like 32 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 74/125 (59.20%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 1   MRRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLM 60
           MRRR+SSKP   QPFFL LLLF LQ        L LLRA+   PCN SI E + E E LM
Sbjct: 1   MRRRMSSKPKPSQPFFL-LLLFLLQ-------ALCLLRASFASPCNGSIAECNTEKEMLM 60

Query: 61  ESKINRRFLEQQKKYISTGR--------------QPYTKSGSCTPPSANTYNRVCSKTYR 112
           ES+I+RRFLEQQKKYIS G               QPYTKSGSC PP +N Y+R CSK YR
Sbjct: 61  ESEISRRFLEQQKKYISIGALKKDRPACDGSGRGQPYTKSGSCVPPPSNPYDRGCSKIYR 117

[Close]

BLAST of Sed0002888 vs. NCBI nr
Match: KAA0067637.1 (protein RALF-like 32 [Cucumis melo var. makuwa] >TYK23639.1 protein RALF-like 32 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23
Identity = 75/125 (60.00%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MRRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLM 60
           MRRRISSKP+SLQP FL LLL  L  L LL+  L L+RA+ST  CN SI E   E E LM
Sbjct: 1   MRRRISSKPMSLQPCFL-LLLLLLLFLFLLQ-DLCLVRASSTHSCNGSIAECGSEDEMLM 60

Query: 61  ESKINRRFLEQQKKYIS--------------TGRQPYTKSGSCTPPSANTYNRVCSKTYR 112
           ES+I+RRFL QQKKYIS              +G +PYTKSGSC PP AN Y+R C K YR
Sbjct: 61  ESEISRRFLAQQKKYISIGALKKDHPACDGASGGRPYTKSGSCAPPPANPYDRGCPKIYR 120

[Close]

BLAST of Sed0002888 vs. NCBI nr
Match: XP_004147646.3 (protein RALF-like 32 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 73/124 (58.87%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 2   RRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLME 61
           R+RISSKP+SLQ  FL LL  FL     L   L L+RA+ST  CN SI E   E E LME
Sbjct: 9   RKRISSKPMSLQTCFLLLLFLFL----FLFQDLCLVRASSTHSCNGSIAECANEEEMLME 68

Query: 62  SKINRRFLEQQKKYIS--------------TGRQPYTKSGSCTPPSANTYNRVCSKTYRC 112
           S+I RRFLEQQKKYIS              +G QPYT+SGSC PP AN YNR CSK YRC
Sbjct: 69  SEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRC 128

[Close]

BLAST of Sed0002888 vs. NCBI nr
Match: XP_038900965.1 (protein RALF-like 32 [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 5.4e-21
Identity = 72/125 (57.60%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 1   MRRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLM 60
           MRRRISSKPI LQ  FL L LF      LL   L L+RA S   CN SI E   E E LM
Sbjct: 14  MRRRISSKPICLQSCFLLLFLFL-----LLLQDLCLVRALSKHSCNGSIAECGSEEEMLM 73

Query: 61  ESKINRRFLEQQKKYISTGR--------------QPYTKSGSCTPPSANTYNRVCSKTYR 112
           ES+I+RRFLEQ KKYIS G               QPYTKSGSC PP  N Y R CSK YR
Sbjct: 74  ESEISRRFLEQHKKYISIGALKKDHPACDGSGGGQPYTKSGSCVPPPTNPYTRGCSKIYR 133

[Close]

BLAST of Sed0002888 vs. NCBI nr
Match: KAE8650417.1 (hypothetical protein Csa_010756 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-18
Identity = 56/92 (60.87%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 34  LHLLRATSTIPCNNSIVEGDREVETLMESKINRRFLEQQKKYIS--------------TG 93
           L L+RA+ST  CN SI E   E E LMES+I RRFLEQQKKYIS              +G
Sbjct: 74  LCLVRASSTHSCNGSIAECANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACDGASG 133

Query: 94  RQPYTKSGSCTPPSANTYNRVCSKTYRCRSDD 112
            QPYT+SGSC PP AN YNR CSK YRCRSDD
Sbjct: 134 GQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 165

[Close]

BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A6J1C9Y4 (protein RALF-like 32 OS=Momordica charantia OX=3673 GN=LOC111009304 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 74/125 (59.20%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 1   MRRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLM 60
           MRRR+SSKP   QPFFL LLLF LQ        L LLRA+   PCN SI E + E E LM
Sbjct: 1   MRRRMSSKPKPSQPFFL-LLLFLLQ-------ALCLLRASFASPCNGSIAECNTEKEMLM 60

Query: 61  ESKINRRFLEQQKKYISTGR--------------QPYTKSGSCTPPSANTYNRVCSKTYR 112
           ES+I+RRFLEQQKKYIS G               QPYTKSGSC PP +N Y+R CSK YR
Sbjct: 61  ESEISRRFLEQQKKYISIGALKKDRPACDGSGRGQPYTKSGSCVPPPSNPYDRGCSKIYR 117

[Close]

BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A5A7VKE5 (Protein RALF-like 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00040 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 75/125 (60.00%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MRRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLM 60
           MRRRISSKP+SLQP FL LLL  L  L LL+  L L+RA+ST  CN SI E   E E LM
Sbjct: 1   MRRRISSKPMSLQPCFL-LLLLLLLFLFLLQ-DLCLVRASSTHSCNGSIAECGSEDEMLM 60

Query: 61  ESKINRRFLEQQKKYIS--------------TGRQPYTKSGSCTPPSANTYNRVCSKTYR 112
           ES+I+RRFL QQKKYIS              +G +PYTKSGSC PP AN Y+R C K YR
Sbjct: 61  ESEISRRFLAQQKKYISIGALKKDHPACDGASGGRPYTKSGSCAPPPANPYDRGCPKIYR 120

[Close]

BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A0A0L9A8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171840 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22
Identity = 72/124 (58.06%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 2   RRRISSKPISLQPFFLHLLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLME 61
           R+RISSKP+SLQ  FL LL  FL     L   L L+RA+ST  CN SI     E E LME
Sbjct: 9   RKRISSKPMSLQTCFLLLLFLFL----FLFQDLCLVRASSTHSCNGSIAACANEEEMLME 68

Query: 62  SKINRRFLEQQKKYIS--------------TGRQPYTKSGSCTPPSANTYNRVCSKTYRC 112
           S+I RRFLEQQKKYIS              +G QPYT+SGSC PP AN YNR CSK YRC
Sbjct: 69  SEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRC 128

[Close]

BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A6J1GXB3 (protein RALF-like 32 OS=Cucurbita moschata OX=3662 GN=LOC111458002 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17
Identity = 60/107 (56.07%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 19  LLLFFLQDLHLLELYLHLLRATSTIPCNNSIVEGDREVETLMESKINRRFLEQQKKYIST 78
           L L  +QD       L L+RA+S   CN SI E   E ETLMES+I+RRFL QQKKYIS 
Sbjct: 12  LFLLLVQD-------LCLVRASSKHSCNGSIAECGGEDETLMESEISRRFLAQQKKYISI 71

Query: 79  GR--------------QPYTKSGSCTPPSANTYNRVCSKTYRCRSDD 112
           G               QPYTKSGSC PP AN YNR CSK YRCRSDD
Sbjct: 72  GALKKDHPACDGGGGGQPYTKSGSCAPPPANPYNRGCSKIYRCRSDD 111

[Close]

BLAST of Sed0002888 vs. ExPASy TrEMBL
Match: A0A650EQP6 (Rapid alkalinization factor 18 OS=Pyrus x bretschneideri OX=225117 GN=RALF18 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 41  STIPCNNSIVEGDREVETLMESKINRRFLEQQKKYISTGR--------------QPYTKS 100
           S+ PCN+SIVE D E E LMES+I+RRFL Q KKYIS G               + Y+K+
Sbjct: 29  SSTPCNSSIVECDDEGELLMESEISRRFL-QTKKYISPGALKPDQPVCNGGGRGEAYSKT 88

Query: 101 GSCTPPSANTYNRVCSKTYRCRSD 111
           G C PP +N YNR CSK YRCRSD
Sbjct: 89  GGCLPPPSNPYNRGCSKYYRCRSD 111

The following BLAST results are available for this feature:

BLAST of Sed0002888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138047.1	2.6e-23	59.20	protein RALF-like 32 [Momordica charantia]	[more]
KAA0067637.1	9.8e-23	60.00	protein RALF-like 32 [Cucumis melo var. makuwa] >TYK23639.1 protein RALF-like 32...	[more]
XP_004147646.3	1.3e-22	58.87	protein RALF-like 32 [Cucumis sativus]	[more]
XP_038900965.1	5.4e-21	57.60	protein RALF-like 32 [Benincasa hispida]	[more]
KAE8650417.1	7.3e-18	60.87	hypothetical protein Csa_010756 [Cucumis sativus]	[more]

BLAST of Sed0002888 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C9Y4	1.2e-23	59.20	protein RALF-like 32 OS=Momordica charantia OX=3673 GN=LOC111009304 PE=3 SV=1	[more]
A0A5A7VKE5	4.7e-23	60.00	Protein RALF-like 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577...	[more]
A0A0A0L9A8	3.1e-22	58.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171840 PE=3 SV=1	[more]
A0A6J1GXB3	3.0e-17	56.07	protein RALF-like 32 OS=Cucurbita moschata OX=3662 GN=LOC111458002 PE=3 SV=1	[more]
A0A650EQP6	2.9e-12	54.76	Rapid alkalinization factor 18 OS=Pyrus x bretschneideri OX=225117 GN=RALF18 PE=...	[more]

BLAST of Sed0002888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 57..108 e-value: 5.2E-6 score: 27.3
None	No IPR available	PANTHER	PTHR33136	RAPID ALKALINIZATION FACTOR-LIKE	coord: 13..108
None	No IPR available	PANTHER	PTHR33136:SF4	PROTEIN RALF-LIKE 32	coord: 13..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002888.1	Sed0002888.1	mRNA