Sed0002713 (gene) Chayote v1

Overview


Name	Sed0002713
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein TRAUCO
Location	LG12: 25587865 .. 25588473 (-)
RNA-Seq Expression	Sed0002713
Synteny	Sed0002713

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGGATGAGGATGGTAAAGCCTTCCTTGTCCTCACCTTACCTGTGGATATCTCTACTCCCATTAGTTCGTATATAATTTTTTTATAAAAAAAAAAACATACAACACGTTTAAAAATGATATTATAATCTACTGAATTTGGAATGCGAGGGAGACTTGAAAATTACCATAGCTTCTTCAATCCTTCGACCCTAATCGTCTCAAGTCTAATTCTTAGACCTTTTTCCATCCTCCCTTTCATATTCTTCCAAAATTTCTCCCATTTTGTTCGGATCAAACCCAATTGTGTAACCTTAGTGGAATTCATTTTCATGGATTCTGTTCGTGTCGCTCAGATCGATCCCCCACTAATGGATACCAATGTTAGTCGCTCTTTTATAGACCCTCGACAACACCCACCCCAACGCATTTGAAGAAATCTCTGAAGATGAACCCGCCTCCGATGACACTAACAAATCCGTCAGATTGGCCAAATCCCCTAGGAATGAGGACCGACCTCTGAAAAAGCATAAGCAATCGGAGGAGGACAAATCCACGTTGTCAGAATCCGCTGCGGCTTTGACCAATGCCTGCGAATCCCAAGAAATCAAAGAAGAAGAACAATAA

mRNA sequence

ATGGCTGGGATGAGGATGACCCTCGACAACACCCACCCCAACGCATTTGAAGAAATCTCTGAAGATGAACCCGCCTCCGATGACACTAACAAATCCGTCAGATTGGCCAAATCCCCTAGGAATGAGGACCGACCTCTGAAAAAGCATAAGCAATCGGAGGAGGACAAATCCACGTTGTCAGAATCCGCTGCGGCTTTGACCAATGCCTGCGAATCCCAAGAAATCAAAGAAGAAGAACAATAA

Coding sequence (CDS)

ATGGCTGGGATGAGGATGACCCTCGACAACACCCACCCCAACGCATTTGAAGAAATCTCTGAAGATGAACCCGCCTCCGATGACACTAACAAATCCGTCAGATTGGCCAAATCCCCTAGGAATGAGGACCGACCTCTGAAAAAGCATAAGCAATCGGAGGAGGACAAATCCACGTTGTCAGAATCCGCTGCGGCTTTGACCAATGCCTGCGAATCCCAAGAAATCAAAGAAGAAGAACAATAA

Protein sequence

MAGMRMTLDNTHPNAFEEISEDEPASDDTNKSVRLAKSPRNEDRPLKKHKQSEEDKSTLSESAAALTNACESQEIKEEEQ

Homology

[Close]

BLAST of Sed0002713 vs. NCBI nr
Match: XP_038878349.1 (protein TRAUCO [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 13  PNAFEEISEDEPASDDTNKSVRLAKSPRN----EDRPLKKHKQ-------SEEDKSTLSE 69
           P+A EEISE+EPASDDT KS +LAKSP N    ED P KK KQ        EEDKS L E
Sbjct: 54  PDASEEISEEEPASDDTEKSAKLAKSPGNDEDDEDPPPKKQKQLSSLNQPVEEDKSPLPE 113

[Close]

BLAST of Sed0002713 vs. NCBI nr
Match: XP_008450408.1 (PREDICTED: protein TRAUCO [Cucumis melo] >KAA0051234.1 protein TRAUCO [Cucumis melo var. makuwa] >TYK18892.1 protein TRAUCO [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 9.6e-04
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 13  PNAFEEISEDEPASDDTNKSVRLAKSPRN----EDRPLKKHKQ-------SEEDKSTLSE 66
           P+A EEISE+EPASDDT KS +LAKSP N    ED PLKK KQ        EEDKS L  
Sbjct: 54  PDASEEISEEEPASDDTEKSAKLAKSPGNDDDDEDPPLKKQKQLSSLNQPVEEDKSPLPG 113

[Close]

BLAST of Sed0002713 vs. ExPASy TrEMBL
Match: A0A5D3D5T3 (Protein TRAUCO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001020 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 13  PNAFEEISEDEPASDDTNKSVRLAKSPRN----EDRPLKKHKQ-------SEEDKSTLSE 66
           P+A EEISE+EPASDDT KS +LAKSP N    ED PLKK KQ        EEDKS L  
Sbjct: 54  PDASEEISEEEPASDDTEKSAKLAKSPGNDDDDEDPPLKKQKQLSSLNQPVEEDKSPLPG 113

[Close]

BLAST of Sed0002713 vs. ExPASy TrEMBL
Match: A0A1S3BPT9 (protein TRAUCO OS=Cucumis melo OX=3656 GN=LOC103492020 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 13  PNAFEEISEDEPASDDTNKSVRLAKSPRN----EDRPLKKHKQ-------SEEDKSTLSE 66
           P+A EEISE+EPASDDT KS +LAKSP N    ED PLKK KQ        EEDKS L  
Sbjct: 54  PDASEEISEEEPASDDTEKSAKLAKSPGNDDDDEDPPLKKQKQLSSLNQPVEEDKSPLPG 113

[Close]

BLAST of Sed0002713 vs. ExPASy TrEMBL
Match: A0A6J1DLX9 (protein TRAUCO OS=Momordica charantia OX=3673 GN=LOC111021656 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.9e-04
Identity = 38/72 (52.78%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 13  PNAFEEISEDEPASDDTNKSVRLAKSPRN----EDRPLKKHKQ--------SEEDKSTLS 72
           P+A E+ISE+EPASDDT KS +LAKSP N    ED P KK KQ        +EE KS L 
Sbjct: 54  PDASEDISEEEPASDDTEKSAKLAKSPANDDDDEDPPPKKQKQLSSLNLQPAEEPKSPLL 113

The following BLAST results are available for this feature:

BLAST of Sed0002713 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878349.1	1.5e-04	58.21	protein TRAUCO [Benincasa hispida]	[more]
XP_008450408.1	9.6e-04	59.38	PREDICTED: protein TRAUCO [Cucumis melo] >KAA0051234.1 protein TRAUCO [Cucumis m...	[more]

BLAST of Sed0002713 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002713 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5T3	4.6e-04	59.38	Protein TRAUCO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00102...	[more]
A0A1S3BPT9	4.6e-04	59.38	protein TRAUCO OS=Cucumis melo OX=3656 GN=LOC103492020 PE=4 SV=1	[more]
A0A6J1DLX9	7.9e-04	52.78	protein TRAUCO OS=Momordica charantia OX=3673 GN=LOC111021656 PE=4 SV=1	[more]

BLAST of Sed0002713 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002713.1	Sed0002713.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development