Sed0002328 (gene) Chayote v1

Overview


Name	Sed0002328
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S4, chloroplastic
Location	Contig00347: 4791 .. 5396 (+)
RNA-Seq Expression	Sed0002328
Synteny	Sed0002328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCCAAAACCGGAAACGATCTTAAAAACCAATCGCGTTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGGTTGGATAACATCCTTTTTAGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGTTGCAAACCCCGAGATATTATTACAGGAAAGGAGGAAAAAAAATCGAGAGCACTGATTCAAAATTATCTTGATTCATCCCCCCCTCAGGAATTGCCAAAACATTTGACTCTTCAGCCATTGCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTCAGTTTGAAAATAAATGAATTGCTCGTTGTAGAATATTATTCTCGTCAGACTTAA

mRNA sequence

ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCCAAAACCGGAAACGATCTTAAAAACCAATCGCGTTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGGTTGGATAACATCCTTTTTAGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGTTGCAAACCCCGAGATATTATTACAGGAAAGGAGGAAAAAAAATCGAGAGCACTGATTCAAAATTATCTTGATTCATCCCCCCCTCAGGAATTGCCAAAACATTTGACTCTTCAGCCATTGCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTCAGTTTGAAAATAAATGAATTGCTCGTTGTAGAATATTATTCTCGTCAGACTTAA

Coding sequence (CDS)

ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCCAAAACCGGAAACGATCTTAAAAACCAATCGCGTTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGGTTGGATAACATCCTTTTTAGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGTTGCAAACCCCGAGATATTATTACAGGAAAGGAGGAAAAAAAATCGAGAGCACTGATTCAAAATTATCTTGATTCATCCCCCCCTCAGGAATTGCCAAAACATTTGACTCTTCAGCCATTGCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTCAGTTTGAAAATAAATGAATTGCTCGTTGTAGAATATTATTCTCGTCAGACTTAA

Protein sequence

MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIIDSKWVSLKINELLVVEYYSRQT

Homology

[Close]

BLAST of Sed0002328 vs. NCBI nr
Match: YP_009945419.1 (ribosomal protein S4 [Sechium edule] >QIT04135.1 ribosomal protein S4 [Sechium edule] >QOE55949.1 ribosomal protein S4 [Sechium edule])

HSP 1 Score: 392.1 bits (1006), Expect = 2.9e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. NCBI nr
Match: QJR52958.1 (ribosomal protein S4 [Herpetospermum pedunculosum])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT KEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           +KWVSLKINELLVVEYYSRQT
Sbjct: 181 NKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. NCBI nr
Match: YP_009456148.1 (ribosomal protein S4 [Lagenaria siceraria] >YP_009752498.1 ribosomal protein S4 [Trichosanthes tubiflora] >YP_009753091.1 ribosomal protein S4 [Corallocarpus boehmii] >YP_009753176.1 ribosomal protein S4 [Trichosanthes truncata] >YP_009753260.1 ribosomal protein S4 [Nothoalsomitra suberosa] >YP_009753876.1 ribosomal protein S4 [Trichosanthes lobata] >QNM38533.1 ribosomal protein S4 [Lagenaria siceraria var. microcarpa] >AHM88706.1 ribosomal protein S4 [Lagenaria siceraria] >AHM88765.1 ribosomal protein S4 [Lagenaria siceraria] >AHM88938.1 ribosomal protein S4 [Lagenaria siceraria] >AHM88996.1 ribosomal protein S4 [Lagenaria siceraria])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT K+EKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. NCBI nr
Match: YP_010131096.1 (ribosomal protein S4 [Benincasa hispida] >QPZ75743.1 ribosomal protein S4 [Benincasa hispida] >QSQ72312.1 ribosomal protein S4 [Benincasa hispida])

HSP 1 Score: 387.5 bits (994), Expect = 7.0e-104
Identity = 198/201 (98.51%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT K+EKKSRAL+QNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALMQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. NCBI nr
Match: QZL38595.1 (ribosomal protein S4 [Citrullus naudinianus])

HSP 1 Score: 387.1 bits (993), Expect = 9.2e-104
Identity = 198/201 (98.51%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SI DIPSYRCKPRDIIT K+EKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIADIPSYRCKPRDIITAKDEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy Swiss-Prot
Match: Q4VZH3 (30S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.0e-105
Identity = 197/201 (98.01%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYR PRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRRPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT K+EKKSR LIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy Swiss-Prot
Match: Q49KZ6 (30S ribosomal protein S4, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps4 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.9e-99
Identity = 182/201 (90.55%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRP+ G+DL+NQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIIT ++++KSRA+IQNY DSSP +E+PKHLTL P QYKGLVNQIID
Sbjct: 121 CIVDIPSYRCKPRDIITARDDQKSRAMIQNYFDSSPHEEVPKHLTLHPFQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKW+ LKINELLVVEYYSRQT
Sbjct: 181 SKWIGLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy Swiss-Prot
Match: A6MM38 (30S ribosomal protein S4, chloroplastic OS=Buxus microphylla OX=153571 GN=rps4 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 3.2e-99
Identity = 185/201 (92.04%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRP+ G+DL+NQSRSGK+SQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIIT K+E+KSRALIQNYLDSSP +ELPKHLTL   QYKGLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDIITAKDEQKSRALIQNYLDSSPHEELPKHLTLHSFQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWV LKINELLVVEYYSRQT
Sbjct: 181 SKWVGLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy Swiss-Prot
Match: A0A337 (30S ribosomal protein S4, chloroplastic OS=Coffea arabica OX=13443 GN=rps4 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.7e-98
Identity = 183/201 (91.04%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLT+K+P+ GNDL+NQ RSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTNKKPRAGNDLRNQLRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIITGK+E+KSRALIQ  LDSSP +ELP HLTL P QYKGLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDIITGKDEQKSRALIQKSLDSSPQEELPSHLTLHPFQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWV LKINELLVVEYYSRQT
Sbjct: 181 SKWVGLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy Swiss-Prot
Match: Q1KXV7 (30S ribosomal protein S4, chloroplastic OS=Helianthus annuus OX=4232 GN=rps4 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.6e-98
Identity = 182/201 (90.55%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLT+KRP+ G+DL+NQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTNKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIP ARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRD I  ++E+KSRALIQN LDSSPP+ELP HLTLQP QYKGLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDTIAARDEQKSRALIQNSLDSSPPEELPNHLTLQPFQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWV LKINELLVVEYYSRQT
Sbjct: 181 SKWVGLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy TrEMBL
Match: A0A6H0EQJ1 (30S ribosomal protein S4, chloroplastic OS=Sechium edule OX=184140 GN=rps4 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.4e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy TrEMBL
Match: X2F260 (30S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps4 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT K+EKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy TrEMBL
Match: A0A6H0EW03 (30S ribosomal protein S4, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=rps4 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT K+EKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy TrEMBL
Match: A0A6H0ET69 (30S ribosomal protein S4, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN=rps4 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT K+EKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. ExPASy TrEMBL
Match: A0A6H0EVH0 (30S ribosomal protein S4, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN=rps4 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIIT K+EKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. TAIR 10
Match: ATCG00380.1 (chloroplast ribosomal protein S4 )

HSP 1 Score: 339.0 bits (868), Expect = 2.7e-93
Identity = 176/201 (87.56%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPK G+DL+NQSRS KKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TE QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIPQARQLVNH HILVNG
Sbjct: 61  TEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITGKEEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIIT K+E+ SR L+QN LDSS P+ELP HLTL   QY+GLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
            K V LKINELLVVEYYSRQT
Sbjct: 181 RKCVGLKINELLVVEYYSRQT 201

[Close]

BLAST of Sed0002328 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 45.1 bits (105), Expect = 8.0e-05
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 88  EMRLDNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITGKE 141
           E R D I  RL    TIPQARQ ++HR + VN  +V I  ++    DII+ +E
Sbjct: 104 ETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQE 156

[Close]

BLAST of Sed0002328 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 45.1 bits (105), Expect = 8.0e-05
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 88  EMRLDNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITGKE 141
           E R D I  RL    TIPQARQ ++HR + VN  +V I  ++    DII+ +E
Sbjct: 104 ETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQE 156

[Close]

BLAST of Sed0002328 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 42.0 bits (97), Expect = 6.7e-04
Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = 0


Query: 36  SRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLL----QLLEMRL 95
           SR    ++  + L+EK   R   G    + +    +  + +     VL       LE RL
Sbjct: 52  SRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRL 111

Query: 96  DNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSY 129
             I+F+ GMA +I  AR L+  RHI V   +V+IPS+
Sbjct: 112 QTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148

The following BLAST results are available for this feature:

BLAST of Sed0002328 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009945419.1	2.9e-105	100.00	ribosomal protein S4 [Sechium edule] >QIT04135.1 ribosomal protein S4 [Sechium e...	[more]
QJR52958.1	3.2e-104	99.00	ribosomal protein S4 [Herpetospermum pedunculosum]	[more]
YP_009456148.1	3.2e-104	99.00	ribosomal protein S4 [Lagenaria siceraria] >YP_009752498.1 ribosomal protein S4 ...	[more]
YP_010131096.1	7.0e-104	98.51	ribosomal protein S4 [Benincasa hispida] >QPZ75743.1 ribosomal protein S4 [Benin...	[more]
QZL38595.1	9.2e-104	98.51	ribosomal protein S4 [Citrullus naudinianus]	[more]

BLAST of Sed0002328 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH3	1.0e-105	98.01	30S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 ...	[more]
Q49KZ6	1.9e-99	90.55	30S ribosomal protein S4, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
A6MM38	3.2e-99	92.04	30S ribosomal protein S4, chloroplastic OS=Buxus microphylla OX=153571 GN=rps4 P...	[more]
A0A337	2.7e-98	91.04	30S ribosomal protein S4, chloroplastic OS=Coffea arabica OX=13443 GN=rps4 PE=3 ...	[more]
Q1KXV7	4.6e-98	90.55	30S ribosomal protein S4, chloroplastic OS=Helianthus annuus OX=4232 GN=rps4 PE=...	[more]

BLAST of Sed0002328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EQJ1	1.4e-105	100.00	30S ribosomal protein S4, chloroplastic OS=Sechium edule OX=184140 GN=rps4 PE=3 ...	[more]
X2F260	1.5e-104	99.00	30S ribosomal protein S4, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps4 P...	[more]
A0A6H0EW03	1.5e-104	99.00	30S ribosomal protein S4, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=rp...	[more]
A0A6H0ET69	1.5e-104	99.00	30S ribosomal protein S4, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN...	[more]
A0A6H0EVH0	1.5e-104	99.00	30S ribosomal protein S4, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN=...	[more]

BLAST of Sed0002328 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00380.1	2.7e-93	87.56	chloroplast ribosomal protein S4	[more]
AT2G07734.1	8.0e-05	43.40	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	8.0e-05	43.40	mitochondrial ribosomal protein S4	[more]
AT5G39850.1	6.7e-04	30.93	Ribosomal protein S4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 89..153 e-value: 1.3E-19 score: 81.1
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 89..136 e-value: 4.9E-20 score: 71.0
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 89..137 e-value: 1.08403E-18 score: 74.5933
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 3..88 e-value: 1.1E-23 score: 94.7
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 3..88 e-value: 7.8E-21 score: 74.8
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 88..184 e-value: 3.2E-95 score: 319.4
None	No IPR available	GENE3D	1.10.1050.10	Ribosomal Protein S4 Delta 41; Chain A, domain 1	coord: 3..199 e-value: 3.2E-95 score: 319.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	PANTHER	PTHR11831:SF35	30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC	coord: 1..200
None	No IPR available	PROSITE	PS50889	S4	coord: 89..150 score: 15.25013
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 3..199
IPR005709	Ribosomal protein S4, bacterial-type	TIGRFAM	TIGR01017	TIGR01017	coord: 3..199 e-value: 1.1E-64 score: 215.9
IPR005709	Ribosomal protein S4, bacterial-type	HAMAP	MF_01306_B	Ribosomal_S4_B	coord: 1..199 score: 30.336443
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..200
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 87..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002328.1	Sed0002328.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding