Sed0002224 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTCTCACAATTATATATTTTTTGCATTCTCCGTTTCTGGTCTCTTCGTATCCGATCCCCAGCCCTGCGTCCTGCATTCATGGCGTCGGTAAGATCTGCACACAATTTCTATACCATCTTTGTATTCTTACATTTTCCACTTTTAATTAGTTGAAGAACCTTAACTTTTCGCTATTTCCCCAATTAATTTGCGATTGCGTTCATTGGTATGATCAAAAGGGTTTGATTAAACACCGATCGGTGATAGGTTACATGGTCGCATTTGTAGATTTTGATTATCGATTAATCAATGGCGGGGTATTAACTTAGATGAAGGAGGGAGATTTTGGTTCCAATTTGGAGCTAACAGGGCTCTCTGAATGAAAAAAACCAATCGCCATTGTTATCTATGGTTCGTTTTCTCCTTAGTTTTTATTGCGATTTTCACCTATGAGTTGTTAGCGTCAACAAATTTTCAATCATGAAAACTATGGGTTCATTCATTCTTTAGCTAGGTTCGGTGCTTCTCTATAGTATGTTTCTAAGGAGCTTTATAATTTTCATTTATGGCGATCTTTTCTTCCTTCGGTTTTTTTTAATAAATTCAGAAGTGTTCGGATTAGCTTACGCGTACAATGATTATGCCCATGGCCCACCAAACATACTTTCTGACCTTACAATATTTGGATGTCGAGGAAACCTATAGGAAACTCCACAACTAATTTGTAGGTAGGTGGCAACTATAGGCGGGCGAATCTCTTTAAGGGAAATATATATTTTTGTCATGTATGTCATAGTTTGGCCCCCCAATAAGCAAAATAATTATTATTGTATACCCCACATAATATTTGGTCCTCCAATATTTGTTATCTAGATCTGCCTCTAGTGACAACCATGGATTGAACTCATCACCTCTTATTTTTCTTGATAGGAAACGAAAATTAAGTTACAAAGAGGGAAAAATAAAAAAAGCAATGGCTATCCTCTTTTACAATTAAACTTAGAAATCACCTTTTACTTTTCCAATACCCTCTTGACCACTAGACCATTCCATAATAATTTTCTTTTTGGTATTTATACAAATATATGGGTTTTTGTTTAAGGAACCTTTTTTGTTTTTGTGGCCTTGTTGTTTGTATTTTTTACATTTTCTCAATAAAAGTTTCATTTTTCATCCAAAAAGAAAACATGTAGAAACACAATCAACATTCCATGTGCATAGGAAACCGAAAAATACCCATCTAGATAAGGGAGGATTGTCCGTAATGCTTATTTGCAGACTAAAGAGTGAAAAAGAGCCCTTTTATCCGCCAGTGTGCTCATACATGGCTTAAATTCTGTTGGACGCACGCTGTTCTTCCTTTTGTCAATCCTTCTGTCTGCAAGAGTTATTTTTTTCTTTTTGAAACAAGGGTAACCACGCTCATCCCTAGGTCAGGCACCGGAAAACATCGAAAGAGTAATGTCACAAGTGAATCTTAAACTTGGGACCTTGAAGTTGAAGGGAGCATACCTTCAAAACCCAAGTCTTCAACCAATGTGCCACCCTTTGGGGACGTCTGCAAAAGTTATAGTAAACTATAGAATTGCAGTGTTGATAACAAGTAATTGTGGGTAGGAGGATTCAAACCCATGACTTTTTTGGTCATTGAAAATACACTGATACTCCTGACCCATTGCTCCCGTTGGCGGGTTGTAAAGGCATTTACCAGTAGAGATCACTTGATAAAGTCTCATGTAGATATCATTGCATTATTGCAGCAGGACAACAAGGGTCGCCCACTGCCAAAGTTTGGTGATTGGGATGTAAATAATCCTGCATCTTCAGAAGGATTTACAGTGATATTTAACAAGGCCAGAAATGAGAAGAAGACAACTGGAACTGCTGCCAATATAGTTCAACCACAAAGTAAAGAACCTGTCTATAACAATGAAAGCTTCTCTCAGGATCATCCAACGAAGGTCTGTTTATTTCAAGACTTTGAGATTCAATTTGTTCTTCATATCTTAATTTTAATATATATTTTGGTATTTGGATGTAGAAGAGGTGGTTTTGCTGTGGTTGAAGACACAGTGGTTTCAAGATTTTGAGTTTGTGTAATCTGTTGTGAAAGCCCATAAATTGTGAGAGCCATATCCAACCTCGAACCGCTGGTTCCCAGCAAAGTTGTCGCTCCAACAATGGCTCGATATTATTTCTCTTCACTTTTCACATTGGCTTTCATGATTTATTAACGTTATATAATTAACTTATATCACATGTTATTCTGTTTTAGTACAGGATGGAAAAGATAAATTACGACGATAACCAAAATC CATTCTCACAATTATATATTTTTTGCATTCTCCGTTTCTGGTCTCTTCGTATCCGATCCCCAGCCCTGCGTCCTGCATTCATGGCGTCGCAGGACAACAAGGGTCGCCCACTGCCAAAGTTTGGTGATTGGGATGTAAATAATCCTGCATCTTCAGAAGGATTTACAGTGATATTTAACAAGGCCAGAAATGAGAAGAAGACAACTGGAACTGCTGCCAATATAGTTCAACCACAAAGTAAAGAACCTGTCTATAACAATGAAAGCTTCTCTCAGGATCATCCAACGAAGAAGAGGTGGTTTTGCTGTGGTTGAAGACACAGTGGTTTCAAGATTTTGAGTTTGTGTAATCTGTTGTGAAAGCCCATAAATTGTGAGAGCCATATCCAACCTCGAACCGCTGGTTCCCAGCAAAGTTGTCGCTCCAACAATGGCTCGATATTATTTCTCTTCACTTTTCACATTGGCTTTCATGATTTATTAACGTTATATAATTAACTTATATCACATGTTATTCTGTTTTAGTACAGGATGGAAAAGATAAATTACGACGATAACCAAAATC ATGGCGTCGCAGGACAACAAGGGTCGCCCACTGCCAAAGTTTGGTGATTGGGATGTAAATAATCCTGCATCTTCAGAAGGATTTACAGTGATATTTAACAAGGCCAGAAATGAGAAGAAGACAACTGGAACTGCTGCCAATATAGTTCAACCACAAAGTAAAGAACCTGTCTATAACAATGAAAGCTTCTCTCAGGATCATCCAACGAAGAAGAGGTGGTTTTGCTGTGGTTGA MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG Homology
BLAST of Sed0002224 vs. NCBI nr
Match: XP_022137180.1 (uncharacterized protein LOC111008714 isoform X2 [Momordica charantia]) HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27 Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 0
BLAST of Sed0002224 vs. NCBI nr
Match: XP_038894676.1 (protein NOI4 isoform X1 [Benincasa hispida]) HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27 Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0002224 vs. NCBI nr
Match: XP_022954832.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6573102.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012289.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 131.3 bits (329), Expect = 3.5e-27 Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0
BLAST of Sed0002224 vs. NCBI nr
Match: XP_004152507.2 (protein NOI4 [Cucumis sativus]) HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27 Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0002224 vs. NCBI nr
Match: XP_008439256.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]) HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26 Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0002224 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14 Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 0
BLAST of Sed0002224 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06 Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0
BLAST of Sed0002224 vs. ExPASy TrEMBL
Match: A0A6J1C5Z3 (uncharacterized protein LOC111008714 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008714 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28 Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 0
BLAST of Sed0002224 vs. ExPASy TrEMBL
Match: A0A6J1GRZ4 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27 Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0
BLAST of Sed0002224 vs. ExPASy TrEMBL
Match: A0A0A0LRE5 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050070 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27 Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0002224 vs. ExPASy TrEMBL
Match: A0A1S3AZ04 (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 6.4e-27 Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0002224 vs. ExPASy TrEMBL
Match: A0A6J1C6I4 (uncharacterized protein LOC111008714 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008714 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 8.4e-27 Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0
BLAST of Sed0002224 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 87.0 bits (214), Expect = 7.0e-18 Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0
BLAST of Sed0002224 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 84.0 bits (206), Expect = 5.9e-17 Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 0
BLAST of Sed0002224 vs. TAIR 10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 80.5 bits (197), Expect = 6.6e-16 Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 0
BLAST of Sed0002224 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 80.1 bits (196), Expect = 8.6e-16 Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 0
BLAST of Sed0002224 vs. TAIR 10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14 Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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