Sed0002184 (gene) Chayote v1

Overview
NameSed0002184
Typegene
OrganismSechium edule (Chayote v1)
Descriptionprotein LITTLE ZIPPER 3-like
LocationLG02: 51706630 .. 51707759 (+)
RNA-Seq ExpressionSed0002184
SyntenySed0002184
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCACTTCAAAGTTAGAATTTGATCTGTGAAATCAGTATTTATAATCTACTTCTTCCGACTTATACTAAAAAAACACCCTAACTAATTCTTGTTGGCCTTACCCTATCATGGCTTACTCAAGAATGTAAAAATAATATGTTTTTAAAAAAGTGCTTTTAAATTGTGTCAACCCTTCAAATTAAGTTTTATTTTTATTTTTTAATTTTAAAAGATAATTTTATCATCTTCTAATGTATGCATTCATCATGGTCATCTACTTGCTGCCCGCTTCGCCATAATGAGTTTCCAACTGAAATCATTGCAATGAAACAACCTCTCTTTCTTCTCTTCCATTTCCTCTTCTCTTTATACTCTCAATTCCATTTCTCCGATTTCGAACAATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCCGTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGTGATGGATTTTTATTTTTGTTCTTCTTTTTCCTCTGTTTGATCTGATTTGCTGTATTTACAGAGTTTTTCTGTGTTCAGGAGGATGAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCACATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGTTTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCAAAAATCGCAGCCTAATTCTGATTAGATTAGAGCTTCTGGATGCGAAATTGAATCGTATGTATCGATCGAGTTCATGATCTCGATCGGTGATTTTCTTGCTACGGATTCCTTTCTGTGCGATTCCTTGGGTTCGTAATCTGATTTTTTGAGAATAAATTAGGTTTTGATCTACAGGGGGAGGGAATCAATAATATTTTAGGATAAATTTGTGTGCAGATGGAATTGGAAATACAGAAATATGTACTGCCGAATTTGATAGATCTGATTCTAAATTCTCCATTGACGAATCTTTCTTTATTTGATGAGACTCTGTTGAAGAAGCTTGGTTGGTTGGCTTGATCTTGAAGCAAAAGAATGAATCGGTTTTTGGACCTAAGACTTTGAATCGAA

mRNA sequence

TTCCACTTCAAAGTTAGAATTTGATCTGTGAAATCAGTATTTATAATCTACTTCTTCCGACTTATACTAAAAAAACACCCTAACTAATTCTTGTTGGCCTTACCCTATCATGGCTTACTCAAGAATGTAAAAATAATATGTTTTTAAAAAAGTGCTTTTAAATTGTGTCAACCCTTCAAATTAAGTTTTATTTTTATTTTTTAATTTTAAAAGATAATTTTATCATCTTCTAATGTATGCATTCATCATGGTCATCTACTTGCTGCCCGCTTCGCCATAATGAGTTTCCAACTGAAATCATTGCAATGAAACAACCTCTCTTTCTTCTCTTCCATTTCCTCTTCTCTTTATACTCTCAATTCCATTTCTCCGATTTCGAACAATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCCGTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGAGGATGAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCACATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGTTTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCAAAAATCGCAGCCTAATTCTGATTAGATTAGAGCTTCTGGATGCGAAATTGAATCGTATGTATCGATCGAGTTCATGATCTCGATCGGTGATTTTCTTGCTACGGATTCCTTTCTGTGCGATTCCTTGGGTTCGTAATCTGATTTTTTGAGAATAAATTAGGTTTTGATCTACAGGGGGAGGGAATCAATAATATTTTAGGATAAATTTGTGTGCAGATGGAATTGGAAATACAGAAATATGTACTGCCGAATTTGATAGATCTGATTCTAAATTCTCCATTGACGAATCTTTCTTTATTTGATGAGACTCTGTTGAAGAAGCTTGGTTGGTTGGCTTGATCTTGAAGCAAAAGAATGAATCGGTTTTTGGACCTAAGACTTTGAATCGAA

Coding sequence (CDS)

ATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCCGTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGAGGATGAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCACATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGTTTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCAAAAATCGCAGCCTAATTCTGATTAG

Protein sequence

MHLQHRRRKMCDSSRFILLRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
Homology
BLAST of Sed0002184 vs. NCBI nr
Match: XP_022974108.1 (protein LITTLE ZIPPER 3-like [Cucurbita maxima])

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 10  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQ 69
           MCDSSRF+LL   RS    RHR    R +   RRM+FA  + G+  E+EIENLKL+M+NQ
Sbjct: 1   MCDSSRFMLLSFTRSSLRCRHRRRPIRLYRLFRRMKFAKDRTGVKEEMEIENLKLYMENQ 60

Query: 70  SIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           SIIEENERLR KAFLLH+ENQVL SQL+ FS +KSQPNSD
Sbjct: 61  SIIEENERLRKKAFLLHKENQVLLSQLQIFSKRKSQPNSD 100

BLAST of Sed0002184 vs. NCBI nr
Match: XP_023540138.1 (protein LITTLE ZIPPER 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.9 bits (250), Expect = 6.5e-18
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 0

Query: 10  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQ 69
           MCDSSRF+LL   RS    RHR    R +   RRMRFA  + G+  E+EIENLKL+M+NQ
Sbjct: 1   MCDSSRFMLLSCTRSSLRCRHRRRPIRLYRLFRRMRFAKDRTGVKEEMEIENLKLYMENQ 60

Query: 70  SIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           SIIEENERLR KAFLLH+ENQVL SQL+  S +KSQPNSD
Sbjct: 61  SIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQPNSD 100

BLAST of Sed0002184 vs. NCBI nr
Match: XP_038901104.1 (protein LITTLE ZIPPER 1-like [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 10  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEE 69
           MCDSSR IL  SY   RHR    R +   RRM+FA  +   E+EI+NLKL+M+NQSIIEE
Sbjct: 1   MCDSSRLILTPSYLACRHRRRPVRVYRLLRRMKFAKEEVEREMEIKNLKLYMENQSIIEE 60

Query: 70  NERLRNKAFLLHEENQVLQSQLRGFSDQK-SQPNSD 101
           NERLR KAFLLH+ENQVL S+L+ FS+ K SQP+SD
Sbjct: 61  NERLRKKAFLLHKENQVLLSRLQNFSNHKPSQPSSD 96

BLAST of Sed0002184 vs. NCBI nr
Match: XP_022924351.1 (protein LITTLE ZIPPER 1-like [Cucurbita moschata] >KAG6582570.1 Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018954.1 Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 10  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMK 69
           MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+
Sbjct: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVK--VEMEIKNLKLYME 60

Query: 70  NQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP+S+
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSN 100

BLAST of Sed0002184 vs. NCBI nr
Match: XP_022980450.1 (protein LITTLE ZIPPER 1-like [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 7.2e-17
Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = 0

Query: 10  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMK 69
           MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+
Sbjct: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVK--VEMEIKNLKLYME 60

Query: 70  NQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP S+
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPGSN 100

BLAST of Sed0002184 vs. ExPASy Swiss-Prot
Match: Q9LZX5 (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.0e-05
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 27 HRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL 84
          H R  + +RR R   +K   E+E+ NLKL ++NQSII ENE L+ KA LLH EN  L
Sbjct: 34 HLRILNLTRRRRL--LKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENNAL 88

BLAST of Sed0002184 vs. ExPASy Swiss-Prot
Match: F4IG60 (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-04
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 9   KMCDSS---------RFIL-LRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMK 68
           KMC SS         R +L L++ S  R  R  SR RRM     +   ++E+ NLKL+++
Sbjct: 43  KMCLSSSETFSDTPTRLVLYLKTQSHVRIPRL-SRRRRM----WREEKKMEMINLKLYVE 102

Query: 69  NQSIIEENERLRNKAFLLHEENQVLQSQLR 89
           NQ+II ENE+L+ KA LLH+EN+ L S L+
Sbjct: 103 NQNIIRENEKLKKKALLLHQENKTLFSLLQ 127

BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1IF90 (protein LITTLE ZIPPER 3-like OS=Cucurbita maxima OX=3661 GN=LOC111472719 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 10  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQ 69
           MCDSSRF+LL   RS    RHR    R +   RRM+FA  + G+  E+EIENLKL+M+NQ
Sbjct: 1   MCDSSRFMLLSFTRSSLRCRHRRRPIRLYRLFRRMKFAKDRTGVKEEMEIENLKLYMENQ 60

Query: 70  SIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           SIIEENERLR KAFLLH+ENQVL SQL+ FS +KSQPNSD
Sbjct: 61  SIIEENERLRKKAFLLHKENQVLLSQLQIFSKRKSQPNSD 100

BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1E9A8 (protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431869 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 10  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMK 69
           MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+
Sbjct: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVK--VEMEIKNLKLYME 60

Query: 70  NQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP+S+
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSN 100

BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1IWC5 (protein LITTLE ZIPPER 1-like OS=Cucurbita maxima OX=3661 GN=LOC111479815 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = 0

Query: 10  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMK 69
           MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+
Sbjct: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVK--VEMEIKNLKLYME 60

Query: 70  NQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP S+
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPGSN 100

BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1F7Z1 (protein LITTLE ZIPPER 3-like OS=Cucurbita moschata OX=3662 GN=LOC111442972 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query: 10  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQ 69
           MCDSSRF+LL   RS    RH     R +   RRMRFA  + G+  E+EI+NLKL+M+NQ
Sbjct: 1   MCDSSRFMLLSFNRSSLRCRHHRRPIRLYRLFRRMRFAKDRTGVKEEMEIKNLKLYMENQ 60

Query: 70  SIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD 101
           SIIEENERLR KAFLLH+ENQVL SQL+  S +KSQ NSD
Sbjct: 61  SIIEENERLRKKAFLLHKENQVLLSQLQILSKRKSQSNSD 100

BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1CZF0 (protein LITTLE ZIPPER 2-like OS=Momordica charantia OX=3673 GN=LOC111015992 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0

Query: 10  MCDSSRFILL---RSYSGFRHR------RFHSRSRRMRFAGVKA-----GMEIEIENLKL 69
           MCDSSR + +   RS  G RHR      R H   RRMR    +A      +E+EI+NLKL
Sbjct: 1   MCDSSRLLFVSSTRSSLGCRHRHRRHPLRVHRLIRRMRLVKEEAEDDGVEVEMEIKNLKL 60

Query: 70  HMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQP 98
            M+NQSIIEENERLR +AFLLH+ENQVL SQ++ FS+QK QP
Sbjct: 61  FMENQSIIEENERLRKRAFLLHKENQVLLSQIQSFSNQKPQP 102

BLAST of Sed0002184 vs. TAIR 10
Match: AT3G60890.1 (protein binding )

HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 27 HRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL 84
          H R  + +RR R   +K   E+E+ NLKL ++NQSII ENE L+ KA LLH EN  L
Sbjct: 34 HLRILNLTRRRRL--LKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENNAL 88

BLAST of Sed0002184 vs. TAIR 10
Match: AT3G60890.2 (protein binding )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 10 MCDSSRFILLRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERL 69
          M  +S  I  +S +    R  +  SRR R   +K   E+E+ NLKL ++NQSII ENE L
Sbjct: 18 MRSASYHIKHKSKTQTHLRILNLTSRRRRL--LKEQKEMEMRNLKLFVENQSIIRENEAL 77

Query: 70 RNKAFLLHEENQVL 84
          + KA LLH EN  L
Sbjct: 78 KKKALLLHHENNAL 89

BLAST of Sed0002184 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 9   KMCDSS---------RFIL-LRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMK 68
           KMC SS         R +L L++ S  R  R  SR RRM     +   ++E+ NLKL+++
Sbjct: 43  KMCLSSSETFSDTPTRLVLYLKTQSHVRIPRL-SRRRRM----WREEKKMEMINLKLYVE 102

Query: 69  NQSIIEENERLRNKAFLLHEENQVLQSQLR 89
           NQ+II ENE+L+ KA LLH+EN+ L S L+
Sbjct: 103 NQNIIRENEKLKKKALLLHQENKTLFSLLQ 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022974108.12.9e-1865.00protein LITTLE ZIPPER 3-like [Cucurbita maxima][more]
XP_023540138.16.5e-1865.00protein LITTLE ZIPPER 3 [Cucurbita pepo subsp. pepo][more]
XP_038901104.12.5e-1762.50protein LITTLE ZIPPER 1-like [Benincasa hispida][more]
XP_022924351.15.5e-1761.76protein LITTLE ZIPPER 1-like [Cucurbita moschata] >KAG6582570.1 Protein LITTLE Z... [more]
XP_022980450.17.2e-1761.76protein LITTLE ZIPPER 1-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9LZX55.0e-0550.88Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1[more]
F4IG602.5e-0443.33Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1IF901.4e-1865.00protein LITTLE ZIPPER 3-like OS=Cucurbita maxima OX=3661 GN=LOC111472719 PE=4 SV... [more]
A0A6J1E9A82.7e-1761.76protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431869 PE=4 ... [more]
A0A6J1IWC53.5e-1761.76protein LITTLE ZIPPER 1-like OS=Cucurbita maxima OX=3661 GN=LOC111479815 PE=4 SV... [more]
A0A6J1F7Z13.0e-1662.00protein LITTLE ZIPPER 3-like OS=Cucurbita moschata OX=3662 GN=LOC111442972 PE=4 ... [more]
A0A6J1CZF02.1e-1455.88protein LITTLE ZIPPER 2-like OS=Momordica charantia OX=3673 GN=LOC111015992 PE=4... [more]
Match NameE-valueIdentityDescription
AT3G60890.13.6e-0650.88protein binding [more]
AT3G60890.21.4e-0544.59protein binding [more]
AT2G45450.11.8e-0543.33protein binding [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33601:SF22PROTEIN LITTLE ZIPPER 1coord: 23..97
IPR039312Protein LITTLE ZIPPERPANTHERPTHR33601PROTEIN LITTLE ZIPPER 4coord: 23..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002184.1Sed0002184.1mRNA