Sed0002184 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCCACTTCAAAGTTAGAATTTGATCTGTGAAATCAGTATTTATAATCTACTTCTTCCGACTTATACTAAAAAAACACCCTAACTAATTCTTGTTGGCCTTACCCTATCATGGCTTACTCAAGAATGTAAAAATAATATGTTTTTAAAAAAGTGCTTTTAAATTGTGTCAACCCTTCAAATTAAGTTTTATTTTTATTTTTTAATTTTAAAAGATAATTTTATCATCTTCTAATGTATGCATTCATCATGGTCATCTACTTGCTGCCCGCTTCGCCATAATGAGTTTCCAACTGAAATCATTGCAATGAAACAACCTCTCTTTCTTCTCTTCCATTTCCTCTTCTCTTTATACTCTCAATTCCATTTCTCCGATTTCGAACAATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCCGTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGTGATGGATTTTTATTTTTGTTCTTCTTTTTCCTCTGTTTGATCTGATTTGCTGTATTTACAGAGTTTTTCTGTGTTCAGGAGGATGAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCACATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGTTTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCAAAAATCGCAGCCTAATTCTGATTAGATTAGAGCTTCTGGATGCGAAATTGAATCGTATGTATCGATCGAGTTCATGATCTCGATCGGTGATTTTCTTGCTACGGATTCCTTTCTGTGCGATTCCTTGGGTTCGTAATCTGATTTTTTGAGAATAAATTAGGTTTTGATCTACAGGGGGAGGGAATCAATAATATTTTAGGATAAATTTGTGTGCAGATGGAATTGGAAATACAGAAATATGTACTGCCGAATTTGATAGATCTGATTCTAAATTCTCCATTGACGAATCTTTCTTTATTTGATGAGACTCTGTTGAAGAAGCTTGGTTGGTTGGCTTGATCTTGAAGCAAAAGAATGAATCGGTTTTTGGACCTAAGACTTTGAATCGAA TTCCACTTCAAAGTTAGAATTTGATCTGTGAAATCAGTATTTATAATCTACTTCTTCCGACTTATACTAAAAAAACACCCTAACTAATTCTTGTTGGCCTTACCCTATCATGGCTTACTCAAGAATGTAAAAATAATATGTTTTTAAAAAAGTGCTTTTAAATTGTGTCAACCCTTCAAATTAAGTTTTATTTTTATTTTTTAATTTTAAAAGATAATTTTATCATCTTCTAATGTATGCATTCATCATGGTCATCTACTTGCTGCCCGCTTCGCCATAATGAGTTTCCAACTGAAATCATTGCAATGAAACAACCTCTCTTTCTTCTCTTCCATTTCCTCTTCTCTTTATACTCTCAATTCCATTTCTCCGATTTCGAACAATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCCGTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGAGGATGAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCACATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGTTTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCAAAAATCGCAGCCTAATTCTGATTAGATTAGAGCTTCTGGATGCGAAATTGAATCGTATGTATCGATCGAGTTCATGATCTCGATCGGTGATTTTCTTGCTACGGATTCCTTTCTGTGCGATTCCTTGGGTTCGTAATCTGATTTTTTGAGAATAAATTAGGTTTTGATCTACAGGGGGAGGGAATCAATAATATTTTAGGATAAATTTGTGTGCAGATGGAATTGGAAATACAGAAATATGTACTGCCGAATTTGATAGATCTGATTCTAAATTCTCCATTGACGAATCTTTCTTTATTTGATGAGACTCTGTTGAAGAAGCTTGGTTGGTTGGCTTGATCTTGAAGCAAAAGAATGAATCGGTTTTTGGACCTAAGACTTTGAATCGAA ATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCCGTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGAGGATGAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCACATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGTTTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCAAAAATCGCAGCCTAATTCTGATTAG MHLQHRRRKMCDSSRFILLRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD Homology
BLAST of Sed0002184 vs. NCBI nr
Match: XP_022974108.1 (protein LITTLE ZIPPER 3-like [Cucurbita maxima]) HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0
BLAST of Sed0002184 vs. NCBI nr
Match: XP_023540138.1 (protein LITTLE ZIPPER 3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 100.9 bits (250), Expect = 6.5e-18 Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 0
BLAST of Sed0002184 vs. NCBI nr
Match: XP_038901104.1 (protein LITTLE ZIPPER 1-like [Benincasa hispida]) HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17 Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of Sed0002184 vs. NCBI nr
Match: XP_022924351.1 (protein LITTLE ZIPPER 1-like [Cucurbita moschata] >KAG6582570.1 Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018954.1 Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17 Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0
BLAST of Sed0002184 vs. NCBI nr
Match: XP_022980450.1 (protein LITTLE ZIPPER 1-like [Cucurbita maxima]) HSP 1 Score: 97.4 bits (241), Expect = 7.2e-17 Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Sed0002184 vs. ExPASy Swiss-Prot
Match: Q9LZX5 (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.0e-05 Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0
BLAST of Sed0002184 vs. ExPASy Swiss-Prot
Match: F4IG60 (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 2.5e-04 Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0
BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1IF90 (protein LITTLE ZIPPER 3-like OS=Cucurbita maxima OX=3661 GN=LOC111472719 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0
BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1E9A8 (protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431869 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17 Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0
BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1IWC5 (protein LITTLE ZIPPER 1-like OS=Cucurbita maxima OX=3661 GN=LOC111479815 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17 Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1F7Z1 (protein LITTLE ZIPPER 3-like OS=Cucurbita moschata OX=3662 GN=LOC111442972 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16 Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Sed0002184 vs. ExPASy TrEMBL
Match: A0A6J1CZF0 (protein LITTLE ZIPPER 2-like OS=Momordica charantia OX=3673 GN=LOC111015992 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14 Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0
BLAST of Sed0002184 vs. TAIR 10
Match: AT3G60890.1 (protein binding ) HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06 Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0
BLAST of Sed0002184 vs. TAIR 10
Match: AT3G60890.2 (protein binding ) HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05 Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0
BLAST of Sed0002184 vs. TAIR 10
Match: AT2G45450.1 (protein binding ) HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05 Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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