Sed0002119 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCGATATTTAAGTGCCAGTTCTTGCCTCTTCCAAATCACGAACTCTCTCTCCCTCTGTTCATTGATATTTTGCTTTCTCTTTTGTAATTAATTTTCCCCAACTTCTCTGCAATTCTTATCTTCTCTTTGAATTCATCCATTTCTGTATAATCGTTCGTCTCTCTGATGGAAGCCTGCATTCACAGCAGCAACAAGCGACTACGCAACGAATCCAACGATTCTCCATTCAATTTCATCGGATCCAAGCTCCTCCGCCTCGATTCCGACGAACTAGATCTCATCTCGCCGGATCCGGATCCGGACGATCGCGATCCACAGATCAGTTCCGATTCGTCGAATGCGGAATCGATCGATTCGAAACAGCACGCCGATGATTCAGCCAAGGAAGAACTACTGAAGATTCTCGAAGAAGCCGACGCTTCAATTGATCGCGATTCGGCGATTCAAGATCTGGATTCCGTGATCAGAAGCTTCGAGGAGGAGATTCAAGTTCCGGTGCAGCCGGAACTCGGATACCTTCTAGAAGCGTCCGATGACGAATTAGGCCTTCCGCCGGCCGGAAAGAGCGGAGAAATCGAGGCCGAGGCTGTGAATTTTGCGGCGGAATTTGAGGATGAGGTTTCTGGTTGCTGTTGGCTGGAGAATTTGAGCAGTGAGAATGAATCGAATCAGGCGGAGGAAGAGGTGGTGGAGTTGCCGTCGTCTCCGCCGCCGTATCGGTCGGAGACGATGTACTGTTTATAATGAAATGGATTGTACTGTTTATAATAACATTCAAGAATTGAAAAAAAAAAAAAAAAACTGGAATTTCTTTTTAAGAACAGGGGAAAGAAAAATGACTACACAGAACTTGCGTTGACTGATGTTTCGCACTTTGATTCTGTCATTTGAAAAAGTACTTATTTTCTGCATTTTAAAAATATGCTAAATTTTTAATTTTGTATTTGTGACGTGAAGAAAGTTGTAATTTACTTAGTTTTTATGTTTAGATAAATTTAGAATTCAGTCTTTGTAATTAAAGACACTCAAATTTAGTTTTTAAATATGGTTTTTATTATTTGTAATTATTATGGAATGGGTTGAGGCGATTAGTTATTGTTAGTTTATTTTTACTCTACCATCTTATGTTCGATCTTTTGTAGTATATATAATCCTCATTTCCC CCGATATTTAAGTGCCAGTTCTTGCCTCTTCCAAATCACGAACTCTCTCTCCCTCTGTTCATTGATATTTTGCTTTCTCTTTTGTAATTAATTTTCCCCAACTTCTCTGCAATTCTTATCTTCTCTTTGAATTCATCCATTTCTGTATAATCGTTCGTCTCTCTGATGGAAGCCTGCATTCACAGCAGCAACAAGCGACTACGCAACGAATCCAACGATTCTCCATTCAATTTCATCGGATCCAAGCTCCTCCGCCTCGATTCCGACGAACTAGATCTCATCTCGCCGGATCCGGATCCGGACGATCGCGATCCACAGATCAGTTCCGATTCGTCGAATGCGGAATCGATCGATTCGAAACAGCACGCCGATGATTCAGCCAAGGAAGAACTACTGAAGATTCTCGAAGAAGCCGACGCTTCAATTGATCGCGATTCGGCGATTCAAGATCTGGATTCCGTGATCAGAAGCTTCGAGGAGGAGATTCAAGTTCCGGTGCAGCCGGAACTCGGATACCTTCTAGAAGCGTCCGATGACGAATTAGGCCTTCCGCCGGCCGGAAAGAGCGGAGAAATCGAGGCCGAGGCTGTGAATTTTGCGGCGGAATTTGAGGATGAGGTTTCTGGTTGCTGTTGGCTGGAGAATTTGAGCAGTGAGAATGAATCGAATCAGGCGGAGGAAGAGGTGGTGGAGTTGCCGTCGTCTCCGCCGCCGTATCGGTCGGAGACGATGTACTGTTTATAATGAAATGGATTGTACTGTTTATAATAACATTCAAGAATTGAAAAAAAAAAAAAAAAACTGGAATTTCTTTTTAAGAACAGGGGAAAGAAAAATGACTACACAGAACTTGCGTTGACTGATGTTTCGCACTTTGATTCTGTCATTTGAAAAAGTACTTATTTTCTGCATTTTAAAAATATGCTAAATTTTTAATTTTGTATTTGTGACGTGAAGAAAGTTGTAATTTACTTAGTTTTTATGTTTAGATAAATTTAGAATTCAGTCTTTGTAATTAAAGACACTCAAATTTAGTTTTTAAATATGGTTTTTATTATTTGTAATTATTATGGAATGGGTTGAGGCGATTAGTTATTGTTAGTTTATTTTTACTCTACCATCTTATGTTCGATCTTTTGTAGTATATATAATCCTCATTTCCC ATGGAAGCCTGCATTCACAGCAGCAACAAGCGACTACGCAACGAATCCAACGATTCTCCATTCAATTTCATCGGATCCAAGCTCCTCCGCCTCGATTCCGACGAACTAGATCTCATCTCGCCGGATCCGGATCCGGACGATCGCGATCCACAGATCAGTTCCGATTCGTCGAATGCGGAATCGATCGATTCGAAACAGCACGCCGATGATTCAGCCAAGGAAGAACTACTGAAGATTCTCGAAGAAGCCGACGCTTCAATTGATCGCGATTCGGCGATTCAAGATCTGGATTCCGTGATCAGAAGCTTCGAGGAGGAGATTCAAGTTCCGGTGCAGCCGGAACTCGGATACCTTCTAGAAGCGTCCGATGACGAATTAGGCCTTCCGCCGGCCGGAAAGAGCGGAGAAATCGAGGCCGAGGCTGTGAATTTTGCGGCGGAATTTGAGGATGAGGTTTCTGGTTGCTGTTGGCTGGAGAATTTGAGCAGTGAGAATGAATCGAATCAGGCGGAGGAAGAGGTGGTGGAGTTGCCGTCGTCTCCGCCGCCGTATCGGTCGGAGACGATGTACTGTTTATAA MEACIHSSNKRLRNESNDSPFNFIGSKLLRLDSDELDLISPDPDPDDRDPQISSDSSNAESIDSKQHADDSAKEELLKILEEADASIDRDSAIQDLDSVIRSFEEEIQVPVQPELGYLLEASDDELGLPPAGKSGEIEAEAVNFAAEFEDEVSGCCWLENLSSENESNQAEEEVVELPSSPPPYRSETMYCL Homology
BLAST of Sed0002119 vs. NCBI nr
Match: KAG7021606.1 (hypothetical protein SDJN02_15332, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 187.2 bits (474), Expect = 1.3e-43 Identity = 129/230 (56.09%), Postives = 147/230 (63.91%), Query Frame = 0
BLAST of Sed0002119 vs. NCBI nr
Match: KAG6587646.1 (hypothetical protein SDJN03_16211, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 186.0 bits (471), Expect = 3.0e-43 Identity = 128/230 (55.65%), Postives = 147/230 (63.91%), Query Frame = 0
BLAST of Sed0002119 vs. NCBI nr
Match: XP_023531746.1 (uncharacterized protein LOC111793909 [Cucurbita pepo subsp. pepo] >XP_023531747.1 uncharacterized protein LOC111793909 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.0 bits (471), Expect = 3.0e-43 Identity = 127/230 (55.22%), Postives = 148/230 (64.35%), Query Frame = 0
BLAST of Sed0002119 vs. NCBI nr
Match: XP_022921385.1 (uncharacterized protein LOC111429674 [Cucurbita moschata]) HSP 1 Score: 170.2 bits (430), Expect = 1.7e-38 Identity = 124/219 (56.62%), Postives = 146/219 (66.67%), Query Frame = 0
BLAST of Sed0002119 vs. NCBI nr
Match: KAG7023238.1 (hypothetical protein SDJN02_14263, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 167.9 bits (424), Expect = 8.4e-38 Identity = 123/219 (56.16%), Postives = 145/219 (66.21%), Query Frame = 0
BLAST of Sed0002119 vs. ExPASy TrEMBL
Match: A0A6J1E5H5 (uncharacterized protein LOC111429674 OS=Cucurbita moschata OX=3662 GN=LOC111429674 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 8.2e-39 Identity = 124/219 (56.62%), Postives = 146/219 (66.67%), Query Frame = 0
BLAST of Sed0002119 vs. ExPASy TrEMBL
Match: A0A5D3DXI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00410 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27 Identity = 107/217 (49.31%), Postives = 133/217 (61.29%), Query Frame = 0
BLAST of Sed0002119 vs. ExPASy TrEMBL
Match: A0A5A7UZW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34725G00010 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 7.2e-27 Identity = 106/217 (48.85%), Postives = 132/217 (60.83%), Query Frame = 0
BLAST of Sed0002119 vs. ExPASy TrEMBL
Match: A0A1S3BWV1 (uncharacterized protein LOC103494333 OS=Cucumis melo OX=3656 GN=LOC103494333 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 7.2e-27 Identity = 106/217 (48.85%), Postives = 132/217 (60.83%), Query Frame = 0
BLAST of Sed0002119 vs. ExPASy TrEMBL
Match: A0A0A0LS21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G022530 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26 Identity = 104/214 (48.60%), Postives = 126/214 (58.88%), Query Frame = 0
BLAST of Sed0002119 vs. TAIR 10
Match: AT1G13360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 3.1e-06 Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 0
BLAST of Sed0002119 vs. TAIR 10
Match: AT1G13360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). ) HSP 1 Score: 49.7 bits (117), Expect = 3.1e-06 Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 0
BLAST of Sed0002119 vs. TAIR 10
Match: AT1G13360.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). ) HSP 1 Score: 49.7 bits (117), Expect = 3.1e-06 Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 0
BLAST of Sed0002119 vs. TAIR 10
Match: AT3G25870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13360.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 9.0e-06 Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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