Sed0001868 (gene) Chayote v1

Overview


Name	Sed0001868
Type	gene
Organism	Sechium edule (Chayote v1)
Description	selenoprotein K
Location	LG03: 4880955 .. 4883670 (+)
RNA-Seq Expression	Sed0001868
Synteny	Sed0001868

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGCTATAAAATTAGAGGTTGGAATTCTGTTCATTAAATATTATTGTATAAAAAAAAAAATCAAAATTCGTGCAAATTTGTAGTTGACCCAAAAACCAAGAGGAACGGTGGTAGTTCGACCTCTGCCCTTTGAACATCGCTTTTCTTTTTCTTCGACTCCGAGAAGGCTCTGGAAAGTCTCCCATGGCGTACGTCGAACGAGGTTCTTTCTCAATTTCTAATCGCTATTATTGTTTCAATTTCACTGCCTAAGAGTTTTGTGGTTCACTTCAGGATTTGAACCATTGCCCTATTTCCTGCTGTAACTTGTAATATGAATTTCATGATTCTGATTTCGATTTTGAGCTCGATCGGCCTAGATCCCATTAATTTCTTGGTATTCTGAGGGAGCTTTCATATATCTGACTGCGTATCTTTTGATCTAATTTTTCTAACCATGTCTCAGAATCGTCATGAATTTTATGTTATTCTAGGGTTTGCTTGCCGCATCTCGATCAGGGGAAATCGTAATCACCTAAATCTTAACTCGGATTTGATGAAATTCACGACCTAGGTTTATTTTTGCTTTTATCTTTTGTCTACGGATTGGATTGTCCAATTGGTTCATAATAACATGGTGGATGATCACTGCGGGGGATTTCTAGTCATTTGATGATTTAGATAAGGCACGTAATTGGACTTCTTATTTACGTCTCCTAGTGGCGGTCCAATGGTTGAGTGCTTGAACTTTGAGCTCTCAAGTTTCCAGATCTAAGGCAACTGGGGGAATTAATTTTACTGTGGCCTTCAATTTTGCTTTCGGTCCTTCGATGTATCTTGGTGCCGAGTCTAGGGATAAATTAGTAGTGACTCTAAATTTAGAGGACTAAAGCTCCAAATTCTTGAGTTATGTTATCAAAAGAAAAAAAAATTGGATTTCTTATTTCCTTACCTCAACTCAAATCAGTGCTATTTTTACAATCTGTTAGTGACCGTTTTAGGAAAATTGTAGTGGATGAGTTGTTTTTACAAAATAATTACTTATGTAGACAAATTTTAAAGTATTTTCATTCATAATCATTAATAAAGTTTAATGTGGTATTGTAAATACTTACGAATTCAGTATTATGTATTATAAATACTAATATAGTATACTCAATGACTATATTTGCTATCTTTTTTTAAATTGACCATATTTGTAATTATTTTCTAGATTTGACTAATCTCGTAGGTTTTCCCACGTTTTTTAAGATGGAGGCAATTGGTTATTACTTTTAGTGCGTGGTAGAATTGACGTCGTTTTTCGAATTTTTCATTTCCGATTATAGTTATACACTCTGTTTATCATCCCTATGGTTTTAGTGAATAGAACTGAGGATGAAAAGGCCTGGAAAATGGCCTTAGCTAATAGGCTTCTTCGCTCAAAAGGTCTTAACTTTTATTTAAGAGGGATTTTCTCATCTGCTCAATGTAAAAGTAAAAATGCTGTTCAACTGAAAGAATATGCTAAAAATACATTATACTCTCATGATTTAGCAGTGTTTTCTGCGCTCTTCAAGTGCTGCTTAAAAATTTGATGTTCTTTTGGGTCTTTTTCTTATGCACATCTAAATTTGTGTTCAAGTTTCTATTTGGTTCCTATTTTTAAAATTAAACATTTTTTATCTTTTGACATTTCAAAAATGCTCTTTTTTTTATATATACAAAAATGCTCATTTTTAGTCGTGGTATATTTTCGCATCAAGACTAAAATGACATTATGTTATGTAACTAGGGATTTTATCATTTCAAGGACTAAAACCGAGCATTATTGAAATGTTGAGAGGAAAAATGTGATTTTGAATTGATTTTATGTTTAGGAGTTTGAAGATATGCTGAAATTGCTTTCACACCGCACAATGTAACATCTTATCTCATTTGTATAACCGGATTGATAAACTCATTGCTATTCTTAGCTGGGTTTGACATGTTACCATTCGTCTGATAGTTTCTTGGAACTATGAAATTGGATGTTTCTGTGACTAACTATATATATATCTTGTAGGTGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACTATAACCGACTTCTTTTGGGCCATTGTAAACGTTATCGGTGTGTTTTTTACCACCTTGTTCTCGGTAAGTTGTTCTTTGTTGCACTGAGAATAATGTTAGGCATTCAGAACTGTCATCATGGGATGGAGGAAAGATTAAGTTTTCGTCCTTCTTTCTTTCTAGATGGAAAAGTCAGAGGCATATAGAAAAGGAGCTGGTTCTGGCAAGAAATGGGATGGTGGGGGCCCTGGAGGTCCCGGGTCGGGGCCTTATGGTGGTCGTCCACCCAGTCGACCTCGTGGTCTCGATAACGTTCGAGGGATTGATCATAGTAAGTTGAATACTAGTTTTGGAAAGAAAAAAAATCCCTTTTTTTTCGTTTTGATTTATTTACTGATATGCAATCTGAACCTATTGCAACCAGGTTCATTACCAGCCTGTGGGTCGTGCTGCGGCTAAGTTTTTGGCGGCTCCATGCTGCATTTACATAAAGCTGTGTAGAAAATGTTATTTTCAATTCAAAATCGTGGATGTTCTTTTTTTTTTTTTTGAAAAACAAAATCGTGGATGTTATCTGTGGGGTTCTCTCGTCATCTTTTGGCGTATCTTTTAATTGCAAAATAACTACAAATATTTATCAATAAATTATATAAATTAATATCTTTAATTTAA

mRNA sequence

ATAGCTATAAAATTAGAGGTTGGAATTCTGTTCATTAAATATTATTGTATAAAAAAAAAAATCAAAATTCGTGCAAATTTGTAGTTGACCCAAAAACCAAGAGGAACGGTGGTAGTTCGACCTCTGCCCTTTGAACATCGCTTTTCTTTTTCTTCGACTCCGAGAAGGCTCTGGAAAGTCTCCCATGGCGTACGTCGAACGAGGTGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACTATAACCGACTTCTTTTGGGCCATTGTAAACGTTATCGGTGTGTTTTTTACCACCTTGTTCTCGATGGAAAAGTCAGAGGCATATAGAAAAGGAGCTGGTTCTGGCAAGAAATGGGATGGTGGGGGCCCTGGAGGTCCCGGGTCGGGGCCTTATGGTGGTCGTCCACCCAGTCGACCTCGTGGTCTCGATAACGTTCGAGGGATTGATCATAGTTCATTACCAGCCTGTGGGTCGTGCTGCGGCTAAGTTTTTGGCGGCTCCATGCTGCATTTACATAAAGCTGTGTAGAAAATGTTATTTTCAATTCAAAATCGTGGATGTTCTTTTTTTTTTTTTTGAAAAACAAAATCGTGGATGTTATCTGTGGGGTTCTCTCGTCATCTTTTGGCGTATCTTTTAATTGCAAAATAACTACAAATATTTATCAATAAATTATATAAATTAATATCTTTAATTTAA

Coding sequence (CDS)

ATGGCGTACGTCGAACGAGGTGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACTATAACCGACTTCTTTTGGGCCATTGTAAACGTTATCGGTGTGTTTTTTACCACCTTGTTCTCGATGGAAAAGTCAGAGGCATATAGAAAAGGAGCTGGTTCTGGCAAGAAATGGGATGGTGGGGGCCCTGGAGGTCCCGGGTCGGGGCCTTATGGTGGTCGTCCACCCAGTCGACCTCGTGGTCTCGATAACGTTCGAGGGATTGATCATAGTTCATTACCAGCCTGTGGGTCGTGCTGCGGCTAA

Protein sequence

MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDGGGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG

Homology

[Close]

BLAST of Sed0001868 vs. NCBI nr
Match: XP_004140863.1 (selenoprotein K isoform X1 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 6.1e-48
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. NCBI nr
Match: XP_022964558.1 (selenoprotein K-like [Cucurbita moschata] >XP_022964567.1 selenoprotein K-like [Cucurbita moschata] >XP_022989819.1 selenoprotein K [Cucurbita maxima] >XP_023516420.1 selenoprotein K-like [Cucurbita pepo subsp. pepo] >KAG6602082.1 Selenoprotein K, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.3 bits (508), Expect = 8.0e-48
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. NCBI nr
Match: XP_008445670.1 (PREDICTED: selenoprotein K [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 1.0e-47
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAI+N+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIINIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. NCBI nr
Match: XP_022993311.1 (selenoprotein K-like [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 4.0e-47
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PR LDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRSLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. NCBI nr
Match: XP_022938384.1 (selenoprotein K-like [Cucurbita moschata] >XP_023551149.1 selenoprotein K-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 2.0e-46
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPY-GGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPY GGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102

[Close]

BLAST of Sed0001868 vs. ExPASy Swiss-Prot
Match: Q9Y6D0 (Selenoprotein K OS=Homo sapiens OX=9606 GN=SELENOK PE=1 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-05
Identity = 32/89 (35.96%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 1  MAYVERGVVKSQRSF--WRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKW 60
          M Y+  G V   RS   WRL  ITDFFW I   + +FF TL   +  +    G  S  ++
Sbjct: 1  MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRY 60

Query: 61 DGGGPGGPGSGPYGGRPPSRPRGLDNVRG 88
          D       G GP  G PP R   ++++RG
Sbjct: 61 D------DGRGP-PGNPPRRMGRINHLRG 82

[Close]

BLAST of Sed0001868 vs. ExPASy Swiss-Prot
Match: Q4R8M1 (Selenoprotein K OS=Macaca fascicularis OX=9541 GN=SELENOK PE=3 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-05
Identity = 32/89 (35.96%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 1  MAYVERGVVKSQRSF--WRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKW 60
          M Y+  G V   RS   WRL  ITDFFW I   + +FF TL   +  +    G  S  ++
Sbjct: 1  MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRY 60

Query: 61 DGGGPGGPGSGPYGGRPPSRPRGLDNVRG 88
          D       G GP  G PP R   ++++RG
Sbjct: 61 D------DGRGP-PGNPPRRMGRINHLRG 82

[Close]

BLAST of Sed0001868 vs. ExPASy Swiss-Prot
Match: Q32PE3 (Selenoprotein K OS=Bos taurus OX=9913 GN=SELENOK PE=3 SV=3)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 30/89 (33.71%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 1  MAYVERGVVKSQRSF--WRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKW 60
          M Y+  G V   RS   WRL  ITDFFW I   + +FF TL   +  +    G+ S  ++
Sbjct: 1  MVYISNGQVLDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKRRGYGSSSDSRY 60

Query: 61 DGGGPGGPGSGPYGGRPPSRPRGLDNVRG 88
          D       G GP G  P  R   +++++G
Sbjct: 61 D------DGRGPPGNPPRRRMGRINHLQG 83

[Close]

BLAST of Sed0001868 vs. ExPASy Swiss-Prot
Match: Q2EN82 (Selenoprotein K OS=Sus scrofa OX=9823 GN=SELENOK PE=3 SV=3)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 31/89 (34.83%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 1  MAYVERGVVKSQRSF--WRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKW 60
          M Y+  G     RS   WRL  ITDFFW I   + +FF TL   +  +    G  S  ++
Sbjct: 1  MVYISNGQALDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKRRGYGGSSDSRY 60

Query: 61 DGGGPGGPGSGPYGGRPPSRPRGLDNVRG 88
          D       G GP  G PP R   ++++RG
Sbjct: 61 D------DGRGP-PGNPPRRMGRINHLRG 82

[Close]

BLAST of Sed0001868 vs. ExPASy Swiss-Prot
Match: P59798 (Selenoprotein K OS=Rattus norvegicus OX=10116 GN=Selenok PE=3 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 32/89 (35.96%), Postives = 41/89 (46.07%), Query Frame = 0


Query: 1  MAYVERGVVKSQR--SFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKW 60
          M Y+  G V   R  S WRL  ITDFFW I   +  FF TL   +  +    G  S  ++
Sbjct: 1  MVYISNGQVLDSRNQSPWRLSFITDFFWGIAEFVVFFFKTLLQQDVKKRRGYGGSSDSRY 60

Query: 61 DGGGPGGPGSGPYGGRPPSRPRGLDNVRG 88
          D       G GP  G PP R   + ++RG
Sbjct: 61 D------DGRGP-PGNPPRRMGRISHLRG 82

[Close]

BLAST of Sed0001868 vs. ExPASy TrEMBL
Match: A0A0A0KDW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G040550 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.0e-48
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. ExPASy TrEMBL
Match: A0A6J1HI52 (selenoprotein K-like OS=Cucurbita moschata OX=3662 GN=LOC111464545 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.9e-48
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. ExPASy TrEMBL
Match: A0A6J1JQF6 (selenoprotein K OS=Cucurbita maxima OX=3661 GN=LOC111486892 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.9e-48
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. ExPASy TrEMBL
Match: A0A1S3BE45 (selenoprotein K OS=Cucumis melo OX=3656 GN=LOC103488629 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.1e-48
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAI+N+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIINIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PRGLDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. ExPASy TrEMBL
Match: A0A6J1JVZ4 (selenoprotein K-like OS=Cucurbita maxima OX=3661 GN=LOC111489356 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKWDG 60
           MAYVERGVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKG+GSGKKWDG
Sbjct: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDG 60

Query: 61  GGPGGPGSGPYGGRPPSRPRGLDNVRGIDHSSLPACGSCCG 102
           GGPGGPGSGPYGGRP   PR LDNVRGIDHSSLPACGSCCG
Sbjct: 61  GGPGGPGSGPYGGRPRGPPRSLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Sed0001868 vs. TAIR 10
Match: AT4G08230.1 (glycine-rich protein )

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MAYVERGVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGAGSGKKW-- 60
           MAYVE GVVK++R  WRL+TI DFF +I+N+I VFF T+FSMEKS+AYRKG+   KKW  
Sbjct: 1   MAYVEGGVVKAKRPIWRLRTIKDFFLSIINLIQVFFVTMFSMEKSDAYRKGSKPNKKWGG 60

Query: 61  ------DGGGPGGPGSGPYGGRPP----SRPRGLDNVRGIDHSSLPACGSCCG 102
                  GGG  G G G  GG PP       RGL+++RG DH+SLPACGSCCG
Sbjct: 61  GMGGGGGGGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGADHNSLPACGSCCG 113

[Close]

BLAST of Sed0001868 vs. TAIR 10
Match: AT4G08230.2 (glycine-rich protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-12
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 42  MEKSEAYRKGAGSGKKW--------DGGGPGGPGSGPYGGRPP----SRPRGLDNVRGID 101
           MEKS+AYRKG+   KKW         GGG  G G G  GG PP       RGL+++RG D
Sbjct: 1   MEKSDAYRKGSKPNKKWGGGMGGGGGGGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGAD 60

The following BLAST results are available for this feature:

BLAST of Sed0001868 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140863.1	6.1e-48	96.04	selenoprotein K isoform X1 [Cucumis sativus]	[more]
XP_022964558.1	8.0e-48	95.05	selenoprotein K-like [Cucurbita moschata] >XP_022964567.1 selenoprotein K-like [...	[more]
XP_008445670.1	1.0e-47	94.06	PREDICTED: selenoprotein K [Cucumis melo]	[more]
XP_022993311.1	4.0e-47	94.06	selenoprotein K-like [Cucurbita maxima]	[more]
XP_022938384.1	2.0e-46	94.12	selenoprotein K-like [Cucurbita moschata] >XP_023551149.1 selenoprotein K-like [...	[more]

BLAST of Sed0001868 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y6D0	6.7e-05	35.96	Selenoprotein K OS=Homo sapiens OX=9606 GN=SELENOK PE=1 SV=3	[more]
Q4R8M1	6.7e-05	35.96	Selenoprotein K OS=Macaca fascicularis OX=9541 GN=SELENOK PE=3 SV=3	[more]
Q32PE3	1.1e-04	33.71	Selenoprotein K OS=Bos taurus OX=9913 GN=SELENOK PE=3 SV=3	[more]
Q2EN82	1.9e-04	34.83	Selenoprotein K OS=Sus scrofa OX=9823 GN=SELENOK PE=3 SV=3	[more]
P59798	1.9e-04	35.96	Selenoprotein K OS=Rattus norvegicus OX=10116 GN=Selenok PE=3 SV=2	[more]

BLAST of Sed0001868 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDW6	3.0e-48	96.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G040550 PE=4 SV=1	[more]
A0A6J1HI52	3.9e-48	95.05	selenoprotein K-like OS=Cucurbita moschata OX=3662 GN=LOC111464545 PE=4 SV=1	[more]
A0A6J1JQF6	3.9e-48	95.05	selenoprotein K OS=Cucurbita maxima OX=3661 GN=LOC111486892 PE=4 SV=1	[more]
A0A1S3BE45	5.1e-48	94.06	selenoprotein K OS=Cucumis melo OX=3656 GN=LOC103488629 PE=4 SV=1	[more]
A0A6J1JVZ4	1.9e-47	94.06	selenoprotein K-like OS=Cucurbita maxima OX=3661 GN=LOC111489356 PE=4 SV=1	[more]

BLAST of Sed0001868 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G08230.1	1.5e-28	58.41	glycine-rich protein	[more]
AT4G08230.2	5.8e-12	54.17	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024491	Selenoprotein SelK/SelG	PFAM	PF10961	SelK_SelG	coord: 2..73 e-value: 8.6E-22 score: 77.6
IPR024491	Selenoprotein SelK/SelG	PANTHER	PTHR16875	SELENOPROTEIN K	coord: 1..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001868.1	Sed0001868.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane