Sed0001459 (gene) Chayote v1

Overview


Name	Sed0001459
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S2, chloroplastic
Location	Contig00297: 178160 .. 178867 (+)
RNA-Seq Expression	Sed0001459
Synteny	Sed0001459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAAGATATTGGAACATCCATTTGGAAGCGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGGATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTGATGCAGCAAGTAGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCAGGCTGCAACAAGGGCTCAGTGTCATTATGTTAATAAAAAATGGCTCAGGGGATGTTAACAAATTGGTCTACTACAGAAACAAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGAGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTAAATATATGACAGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCGGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

mRNA sequence

ATGACAAGAAGATATTGGAACATCCATTTGGAAGCGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGGATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTGATGCAGCAAGGGATGTTAACAAATTGGTCTACTACAGAAACAAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGAGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTAAATATATGACAGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCGGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

Coding sequence (CDS)

ATGACAAGAAGATATTGGAACATCCATTTGGAAGCGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGGATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTGATGCAGCAAGGGATGTTAACAAATTGGTCTACTACAGAAACAAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGAGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTAAATATATGACAGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCGGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

Protein sequence

MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVLMQQGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS

Homology

[Close]

BLAST of Sed0001459 vs. NCBI nr
Match: YP_009751895.1 (ribosomal protein S2 [Cyclanthera pedata] >YP_009945406.1 ribosomal protein S2 [Sechium edule] >QIT04122.1 ribosomal protein S2 [Sechium edule] >QIT04713.1 ribosomal protein S2 [Cyclanthera pedata] >QOE55936.1 ribosomal protein S2 [Sechium edule] >QWQ50142.1 ribosomal protein S2 [Cyclanthera pedata])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 195/236 (82.63%), Postives = 195/236 (82.63%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. NCBI nr
Match: YP_009752064.1 (ribosomal protein S2 [Dendrosicyos socotranus] >QIT05474.1 ribosomal protein S2 [Dendrosicyos socotranus])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 194/236 (82.20%), Postives = 194/236 (82.20%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFGAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. NCBI nr
Match: YP_009317375.1 (ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Citrullus lanatus] >YP_009348020.1 ribosomal protein S2 [Citrullus mucosospermus] >YP_009420783.1 ribosomal protein S2 [Citrullus colocynthis] >YP_009431546.1 ribosomal protein S2 [Citrullus amarus] >YP_009431631.1 ribosomal protein S2 [Citrullus rehmii] >YP_009447439.1 ribosomal protein S2 [Cucurbita maxima] >YP_009456135.1 ribosomal protein S2 [Lagenaria siceraria] >YP_009505069.1 ribosomal protein S2 [Cucurbita pepo] >YP_010131083.1 ribosomal protein S2 [Benincasa hispida] >ALO22031.1 ribosomal protein S2 [Cucurbita ecuadorensis] >ALO22147.1 ribosomal protein S2 [Cucurbita ficifolia] >ALO22201.1 ribosomal protein S2 [Cucurbita foetidissima] >ALO22335.1 ribosomal protein S2 [Cucurbita maxima subsp. andreana] >ALO22560.1 ribosomal protein S2 [Cucurbita pepo subsp. fraterna] >ALO22610.1 ribosomal protein S2 [Cucurbita pepo subsp. ovifera] >ALO22698.1 ribosomal protein S2 [Cucurbita pepo var. ozarkana] >ALO22796.1 ribosomal protein S2 [Cucurbita pepo subsp. pepo] >ALO22851.1 ribosomal protein S2 [Cucurbita pepo var. texana] >ALO22893.1 ribosomal protein S2 [Cucurbita pedatifolia] >APW82450.1 ribosomal protein S2 [Citrullus lanatus subsp. vulgaris] >QNM38520.1 ribosomal protein S2 [Lagenaria siceraria var. microcarpa] >QZL38670.1 ribosomal protein S2 [Citrullus ecirrhosus])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 194/236 (82.20%), Postives = 194/236 (82.20%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. NCBI nr
Match: YP_009751979.1 (ribosomal protein S2 [Cionosicys macranthus] >QIT05220.1 ribosomal protein S2 [Cionosicys macranthus] >QZL38582.1 ribosomal protein S2 [Citrullus naudinianus])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 194/236 (82.20%), Postives = 194/236 (82.20%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTNNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. NCBI nr
Match: YP_009752316.1 (ribosomal protein S2 [Bryonia marmorata] >QIT04290.1 ribosomal protein S2 [Bryonia marmorata])

HSP 1 Score: 372.1 bits (954), Expect = 3.0e-99
Identity = 193/235 (82.13%), Postives = 193/235 (82.13%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 199
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 235

[Close]

BLAST of Sed0001459 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 4.0e-102
Identity = 193/236 (81.78%), Postives = 193/236 (81.78%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. ExPASy Swiss-Prot
Match: Q0G9N0 (30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps2 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 3.8e-97
Identity = 185/235 (78.72%), Postives = 187/235 (79.57%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKNFLLVGTKNKAADSVASAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LR EQKTG LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+EC
Sbjct: 121 LRAEQKTGKLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 199
           +TLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLV AI EGRSSSIRN
Sbjct: 181 LTLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVSAICEGRSSSIRN 235

[Close]

BLAST of Sed0001459 vs. ExPASy Swiss-Prot
Match: Q0ZJ31 (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-96
Identity = 185/235 (78.72%), Postives = 187/235 (79.57%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNI+LE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDL
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GM TNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTG LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+EC
Sbjct: 121 LRTEQKTGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 199
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]

BLAST of Sed0001459 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.9e-96
Identity = 184/235 (78.30%), Postives = 187/235 (79.57%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNI+LE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDL
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQK G LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+EC
Sbjct: 121 LRTEQKAGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 199
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]

BLAST of Sed0001459 vs. ExPASy Swiss-Prot
Match: Q1KXW9 (30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.9e-96
Identity = 183/235 (77.87%), Postives = 187/235 (79.57%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNI+LE MMEAGVHFGHGTRKWNP+MAPYISAKRKGIHI NLTRTARFLSEACDL
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGL+RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EEY ALQEC
Sbjct: 121 LRTEQKTGGLSRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEEYTALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 199
           ITLGIPTICLIDTNCDPDLADISIPANDDAI+SIRLILNKLVFAI EGRS  IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSGYIRN 235

[Close]

BLAST of Sed0001459 vs. ExPASy TrEMBL
Match: A0A6H0ERZ1 (30S ribosomal protein S2, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rps2 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 195/236 (82.63%), Postives = 195/236 (82.63%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. ExPASy TrEMBL
Match: A0A6H0EP46 (30S ribosomal protein S2, chloroplastic OS=Sechium edule OX=184140 GN=rps2 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 195/236 (82.63%), Postives = 195/236 (82.63%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. ExPASy TrEMBL
Match: A0A1P8LE54 (Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.0e-100
Identity = 194/236 (82.20%), Postives = 194/236 (82.20%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. ExPASy TrEMBL
Match: A0A2Z2CQF0 (30S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.0e-100
Identity = 194/236 (82.20%), Postives = 194/236 (82.20%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. ExPASy TrEMBL
Match: X2F5D2 (30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.0e-100
Identity = 194/236 (82.20%), Postives = 194/236 (82.20%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MTRRYWNIHLE MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Sed0001459 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 336.3 bits (861), Expect = 1.7e-92
Identity = 176/236 (74.58%), Postives = 183/236 (77.54%), Query Frame = 0


Query: 1   MTRRYWNIHLEAMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
           MT+RYWNI LE MM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 61  VL-------------------------------------MQQGMLTNWSTTETRLHKFRD 120
           V                                         GMLTNWSTTE RLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 120

Query: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180
           LRTEQKT G NRLPKRDAA+LKRQLS L+TYLGGIKYMTGLPDIVII+DQQEEY AL+EC
Sbjct: 121 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 180

Query: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 200
           ITLGIPTI LIDTNC+PDLADISIPANDDAIASIR ILNKLVFAI EGRSS I+NS
Sbjct: 181 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS 236

The following BLAST results are available for this feature:

BLAST of Sed0001459 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009751895.1	2.7e-100	82.63	ribosomal protein S2 [Cyclanthera pedata] >YP_009945406.1 ribosomal protein S2 [...	[more]
YP_009752064.1	1.0e-99	82.20	ribosomal protein S2 [Dendrosicyos socotranus] >QIT05474.1 ribosomal protein S2 ...	[more]
YP_009317375.1	1.0e-99	82.20	ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Ci...	[more]
YP_009751979.1	1.0e-99	82.20	ribosomal protein S2 [Cionosicys macranthus] >QIT05220.1 ribosomal protein S2 [C...	[more]
YP_009752316.1	3.0e-99	82.13	ribosomal protein S2 [Bryonia marmorata] >QIT04290.1 ribosomal protein S2 [Bryon...	[more]

BLAST of Sed0001459 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP4	4.0e-102	81.78	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ...	[more]
Q0G9N0	3.8e-97	78.72	30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rp...	[more]
Q0ZJ31	1.1e-96	78.72	30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ...	[more]
Q49L09	1.9e-96	78.30	30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
Q1KXW9	1.9e-96	77.87	30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=...	[more]

BLAST of Sed0001459 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ERZ1	1.3e-100	82.63	30S ribosomal protein S2, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rps2 ...	[more]
A0A6H0EP46	1.3e-100	82.63	30S ribosomal protein S2, chloroplastic OS=Sechium edule OX=184140 GN=rps2 PE=3 ...	[more]
A0A1P8LE54	5.0e-100	82.20	Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1	[more]
A0A2Z2CQF0	5.0e-100	82.20	30S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE...	[more]
X2F5D2	5.0e-100	82.20	30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 P...	[more]

BLAST of Sed0001459 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00160.1	1.7e-92	74.58	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 163..177 score: 55.28 coord: 41..50 score: 61.69 coord: 10..28 score: 45.26 coord: 125..142 score: 39.83 coord: 142..153 score: 50.51
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 65..191 e-value: 3.7E-39 score: 134.2 coord: 13..61 e-value: 2.1E-17 score: 63.1
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 13..190 e-value: 1.03572E-63 score: 193.567
None	No IPR available	GENE3D	3.40.50.10490		coord: 62..199 e-value: 1.9E-31 score: 110.7
None	No IPR available	GENE3D	1.10.287.610	Helix hairpin bin	coord: 71..118 e-value: 6.6E-24 score: 85.9
None	No IPR available	GENE3D	3.40.50.10490		coord: 10..61 e-value: 6.5E-18 score: 66.7
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAM	TIGR01011	TIGR01011	coord: 66..193 e-value: 3.1E-41 score: 139.0
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 1..61 coord: 64..193
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	HAMAP	MF_00291_B	Ribosomal_S2_B	coord: 6..192 score: 26.400148
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 125..149
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 10..21
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 10..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001459.1	Sed0001459.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome