Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGACTCTGCAACATTGCCCTAAATCATCGTTTCTTTAAGGAAAATCGAATGGGAAAAACTGTTGTTTGGCTGGAAAAGATTTCTAATAAAAGGGGTCATTGTGCAGACATCACTAAACTAAGCCCAAATGGACAGATCCAGCGAATCATGGCACCTATTGGCATTGAAAGAAAGGGATGGAAGGATATCTTGAAATGTTTAAATAGTCTTACCTCATTGAGATGGGACAAAGATCTATCTGGGGACCACTCCATCAATGTTTCAACACTAACCCCCGACCCCTCCTTTAAGATGGTTGAGGAAAATGCTTGCATTAAAGGAAACTCCCTTGAAGAAAATTTGGAGGCATTTAACAAGGAGAGCAGAGAAAACGGAGAAAGTACAGAGCTGATCAATGAGAACAAAAAGAGAAGCATAAACACACCAAAGGACGACACAACCTCTCCTAAAATTGCTACTTTGATCCTAGCAAAAGCTATCATCGTTCAAAGGAAGATATTCCATGATAACTGGAATGAGTTGAGGAAAGCTATCGAAAAAGAAATCACCAAGTATGAAGTTGCCATTAGCCCTCTTACAGCTGATAAAGCTTCGATATCCTGCAAAGAAATTGAAAAGGCTAGAGTTCTAATAAGCAACAAGAACTGA
mRNA sequence
ATGGAAAGACTCTGCAACATTGCCCTAAATCATCGTTTCTTTAAGGAAAATCGAATGGGAAAAACTGTTGTTTGGCTGGAAAAGATTTCTAATAAAAGGGGTCATTGTGCAGACATCACTAAACTAAGCCCAAATGGACAGATCCAGCGAATCATGGCACCTATTGGCATTGAAAGAAAGGGATGGAAGGATATCTTGAAATGTTTAAATAGTCTTACCTCATTGAGATGGGACAAAGATCTATCTGGGGACCACTCCATCAATGTTTCAACACTAACCCCCGACCCCTCCTTTAAGATGGTTGAGGAAAATGCTTGCATTAAAGGAAACTCCCTTGAAGAAAATTTGGAGGCATTTAACAAGGAGAGCAGAGAAAACGGAGAAAGTACAGAGCTGATCAATGAGAACAAAAAGAGAAGCATAAACACACCAAAGGACGACACAACCTCTCCTAAAATTGCTACTTTGATCCTAGCAAAAGCTATCATCGTTCAAAGGAAGATATTCCATGATAACTGGAATGAGTTGAGGAAAGCTATCGAAAAAGAAATCACCAAGTATGAAGTTGCCATTAGCCCTCTTACAGCTGATAAAGCTTCGATATCCTGCAAAGAAATTGAAAAGGCTAGAGTTCTAATAAGCAACAAGAACTGA
Coding sequence (CDS)
ATGGAAAGACTCTGCAACATTGCCCTAAATCATCGTTTCTTTAAGGAAAATCGAATGGGAAAAACTGTTGTTTGGCTGGAAAAGATTTCTAATAAAAGGGGTCATTGTGCAGACATCACTAAACTAAGCCCAAATGGACAGATCCAGCGAATCATGGCACCTATTGGCATTGAAAGAAAGGGATGGAAGGATATCTTGAAATGTTTAAATAGTCTTACCTCATTGAGATGGGACAAAGATCTATCTGGGGACCACTCCATCAATGTTTCAACACTAACCCCCGACCCCTCCTTTAAGATGGTTGAGGAAAATGCTTGCATTAAAGGAAACTCCCTTGAAGAAAATTTGGAGGCATTTAACAAGGAGAGCAGAGAAAACGGAGAAAGTACAGAGCTGATCAATGAGAACAAAAAGAGAAGCATAAACACACCAAAGGACGACACAACCTCTCCTAAAATTGCTACTTTGATCCTAGCAAAAGCTATCATCGTTCAAAGGAAGATATTCCATGATAACTGGAATGAGTTGAGGAAAGCTATCGAAAAAGAAATCACCAAGTATGAAGTTGCCATTAGCCCTCTTACAGCTGATAAAGCTTCGATATCCTGCAAAGAAATTGAAAAGGCTAGAGTTCTAATAAGCAACAAGAACTGA
Protein sequence
MERLCNIALNHRFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGWKDILKCLNSLTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFNKESRENGESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIEKEITKYEVAISPLTADKASISCKEIEKARVLISNKN
Homology
BLAST of Sed0000388 vs. NCBI nr
Match:
KAA0051807.1 (hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK21434.1 hypothetical protein E5676_scaffold609G00990 [Cucumis melo var. makuwa])
HSP 1 Score: 76.6 bits (187), Expect = 2.9e-10
Identity = 57/214 (26.64%), Postives = 104/214 (48.60%), Query Frame = 0
Query: 12 RFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGWKDILKCLN- 71
RFF E R + +W++K NK+G+ A+I ++ G+ I+ P G E+ GW + L+
Sbjct: 3 RFFLEKRFEEYGLWVQKTYNKKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAHFVSLLHD 62
Query: 72 --------SLTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFNKE 131
+ T+L DK + S + T S+ + IKGNS +E+ + ++
Sbjct: 63 KKDCSTKVNYTTLLIDKKKNIYSSSDSDYETKRRSY----DEVVIKGNSSDEDSQIWSTN 122
Query: 132 SRENGESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIEK 191
+++ G+ D TS T+ K +++ R+ FHD+W + + +++
Sbjct: 123 TKKTGK------------------DLTS---FTIEWEKTVVLTRRYFHDDWENIVEKLKE 182
Query: 192 EITKYEVAISPLTADKASISCKEIEKARVLISNK 217
++ V+ P ADKA I K+IE+A ++ NK
Sbjct: 183 QLDT-TVSYKPFHADKALIFFKDIEQANLICKNK 190
BLAST of Sed0000388 vs. NCBI nr
Match:
KAA0035766.1 (hypothetical protein E6C27_scaffold403G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 69.3 bits (168), Expect = 4.6e-08
Identity = 52/215 (24.19%), Postives = 96/215 (44.65%), Query Frame = 0
Query: 1 MERLCNIALNHRFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERK 60
M+ L +RFF E R + W+ K N+ G+ A++ + G+ ++ P G
Sbjct: 1 MKTLIETPRQNRFFIEKRFHEFCYWVRKTRNRNGYIAEVFSIDQQGRKCCVLVPEGEATS 60
Query: 61 GWKDILKCLNSLTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFN 120
GW L +N NV T +P + E+ KG S+ + ++ +
Sbjct: 61 GWVFFLSMVNP----------------NVKT---EPKARPPLEHFYKKGKSI-ASADSDS 120
Query: 121 KESRENGESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAI 180
SR++ +++E + + + TL L A+++ R++FHD+W + ++
Sbjct: 121 DSSRKS--CARVVSEGYSSDSTSCSESKNQRSVKTLPLENAVVITRRLFHDDWKVIMNSL 180
Query: 181 EKEITKYEVAISPLTADKASISCKEIEKARVLISN 216
+K+ TK +P A+KA I E + A+ L SN
Sbjct: 181 KKQ-TKTSFTYNPFHAEKALIIFSEHQNAKSLCSN 192
BLAST of Sed0000388 vs. NCBI nr
Match:
KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 66.6 bits (161), Expect = 3.0e-07
Identity = 52/205 (25.37%), Postives = 93/205 (45.37%), Query Frame = 0
Query: 12 RFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGWKDILKCLNS 71
RFF E R + +W++K N++G+ A+I ++ G+ I+ P G E+ GW + L+
Sbjct: 69 RFFLEKRFEECCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGAEKSGWAHFVSLLHG 128
Query: 72 LTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFNKESRENGESTE 131
+ D ++ ++T D F + K S E + + E+ TE
Sbjct: 129 ----KKDPSSKTNYRTILNTKMRD-GFSSSDSGEDTKRRSYAEAVIKGSSSDEESNSRTE 188
Query: 132 LINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIEKEITKYEVAI 191
I + T K +TT + + ++ R+ FHD+W + + + +++ V
Sbjct: 189 NIKK-------TGKSNTT----FSFDWERTAVLTRRYFHDDWERIVEKLNEQLDT-TVRY 248
Query: 192 SPLTADKASISCKEIEKARVLISNK 217
P ADKA I K E+A++L NK
Sbjct: 249 KPFHADKALIYFKNEEQAKLLCKNK 256
BLAST of Sed0000388 vs. NCBI nr
Match:
TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 64.3 bits (155), Expect = 1.5e-06
Identity = 50/210 (23.81%), Postives = 95/210 (45.24%), Query Frame = 0
Query: 12 RFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGWKDILKCL-- 71
RFF E R +W++K N++G+ A+I ++ G+ I+ P G E+ GW + L
Sbjct: 159 RFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAQFVSLLYG 218
Query: 72 --NSLTSLRWDKDLSGDHSINVSTL-TPDPSFKMVEENACIKGNSLEENLEAFNKESREN 131
+S T + L+ S+ + D + + A IKG+S +E ++ ++
Sbjct: 219 KKDSSTKTNYRTLLNTKLKDRFSSSESGDDTKRRSYAEAVIKGSSSDEETNSWTTNIKKT 278
Query: 132 GESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIEKEITK 191
G+S + +R+ +++ R+ FHD+W ++ + + +++
Sbjct: 279 GKSNTNFSFEWERT---------------------VVLTRRFFHDDWEKIVEKLNEQLDT 338
Query: 192 YEVAISPLTADKASISCKEIEKARVLISNK 217
V P ADKA I K E+A ++ NK
Sbjct: 339 -TVRYKPFHADKALICFKNEEQANLICKNK 346
BLAST of Sed0000388 vs. NCBI nr
Match:
TYK29852.1 (hypothetical protein E5676_scaffold208G00930 [Cucumis melo var. makuwa])
HSP 1 Score: 63.9 bits (154), Expect = 1.9e-06
Identity = 50/215 (23.26%), Postives = 95/215 (44.19%), Query Frame = 0
Query: 1 MERLCNIALNHRFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERK 60
M+ L +RFF E R + W+ K N+ G+ A++ + G+ ++ P G
Sbjct: 1 MKTLIETPRQNRFFIEKRFHEFCYWVRKTRNRNGYIAEVFSIDQQGRKCCVLVPEGEATS 60
Query: 61 GWKDILKCLNSLTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFN 120
GW L +N NV T +P + E+ KG S+ + ++ +
Sbjct: 61 GWVFFLSMVNP----------------NVKT---EPKARPPLEHFYKKGKSI-ASADSDS 120
Query: 121 KESRENGESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAI 180
SR++ +++E + + + L L A++++R++FHD+W + +
Sbjct: 121 DSSRKS--CARVVSEGYSSDSTSCSESKNQISVKRLPLENAVVIRRRLFHDDWKVIMNSH 180
Query: 181 EKEITKYEVAISPLTADKASISCKEIEKARVLISN 216
+K+ T+ +P A+KA I E + A+ L SN
Sbjct: 181 KKQ-TETSFTYNPFHAEKALIIFSEHQNAKSLCSN 192
BLAST of Sed0000388 vs. ExPASy TrEMBL
Match:
A0A5D3DCX6 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00990 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 57/214 (26.64%), Postives = 104/214 (48.60%), Query Frame = 0
Query: 12 RFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGWKDILKCLN- 71
RFF E R + +W++K NK+G+ A+I ++ G+ I+ P G E+ GW + L+
Sbjct: 3 RFFLEKRFEEYGLWVQKTYNKKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAHFVSLLHD 62
Query: 72 --------SLTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFNKE 131
+ T+L DK + S + T S+ + IKGNS +E+ + ++
Sbjct: 63 KKDCSTKVNYTTLLIDKKKNIYSSSDSDYETKRRSY----DEVVIKGNSSDEDSQIWSTN 122
Query: 132 SRENGESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIEK 191
+++ G+ D TS T+ K +++ R+ FHD+W + + +++
Sbjct: 123 TKKTGK------------------DLTS---FTIEWEKTVVLTRRYFHDDWENIVEKLKE 182
Query: 192 EITKYEVAISPLTADKASISCKEIEKARVLISNK 217
++ V+ P ADKA I K+IE+A ++ NK
Sbjct: 183 QLDT-TVSYKPFHADKALIFFKDIEQANLICKNK 190
BLAST of Sed0000388 vs. ExPASy TrEMBL
Match:
A0A5A7T0M9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00440 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 52/215 (24.19%), Postives = 96/215 (44.65%), Query Frame = 0
Query: 1 MERLCNIALNHRFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERK 60
M+ L +RFF E R + W+ K N+ G+ A++ + G+ ++ P G
Sbjct: 1 MKTLIETPRQNRFFIEKRFHEFCYWVRKTRNRNGYIAEVFSIDQQGRKCCVLVPEGEATS 60
Query: 61 GWKDILKCLNSLTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFN 120
GW L +N NV T +P + E+ KG S+ + ++ +
Sbjct: 61 GWVFFLSMVNP----------------NVKT---EPKARPPLEHFYKKGKSI-ASADSDS 120
Query: 121 KESRENGESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAI 180
SR++ +++E + + + TL L A+++ R++FHD+W + ++
Sbjct: 121 DSSRKS--CARVVSEGYSSDSTSCSESKNQRSVKTLPLENAVVITRRLFHDDWKVIMNSL 180
Query: 181 EKEITKYEVAISPLTADKASISCKEIEKARVLISN 216
+K+ TK +P A+KA I E + A+ L SN
Sbjct: 181 KKQ-TKTSFTYNPFHAEKALIIFSEHQNAKSLCSN 192
BLAST of Sed0000388 vs. ExPASy TrEMBL
Match:
A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 52/205 (25.37%), Postives = 93/205 (45.37%), Query Frame = 0
Query: 12 RFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGWKDILKCLNS 71
RFF E R + +W++K N++G+ A+I ++ G+ I+ P G E+ GW + L+
Sbjct: 69 RFFLEKRFEECCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGAEKSGWAHFVSLLHG 128
Query: 72 LTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFNKESRENGESTE 131
+ D ++ ++T D F + K S E + + E+ TE
Sbjct: 129 ----KKDPSSKTNYRTILNTKMRD-GFSSSDSGEDTKRRSYAEAVIKGSSSDEESNSRTE 188
Query: 132 LINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIEKEITKYEVAI 191
I + T K +TT + + ++ R+ FHD+W + + + +++ V
Sbjct: 189 NIKK-------TGKSNTT----FSFDWERTAVLTRRYFHDDWERIVEKLNEQLDT-TVRY 248
Query: 192 SPLTADKASISCKEIEKARVLISNK 217
P ADKA I K E+A++L NK
Sbjct: 249 KPFHADKALIYFKNEEQAKLLCKNK 256
BLAST of Sed0000388 vs. ExPASy TrEMBL
Match:
A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 7.1e-07
Identity = 50/210 (23.81%), Postives = 95/210 (45.24%), Query Frame = 0
Query: 12 RFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGWKDILKCL-- 71
RFF E R +W++K N++G+ A+I ++ G+ I+ P G E+ GW + L
Sbjct: 159 RFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAQFVSLLYG 218
Query: 72 --NSLTSLRWDKDLSGDHSINVSTL-TPDPSFKMVEENACIKGNSLEENLEAFNKESREN 131
+S T + L+ S+ + D + + A IKG+S +E ++ ++
Sbjct: 219 KKDSSTKTNYRTLLNTKLKDRFSSSESGDDTKRRSYAEAVIKGSSSDEETNSWTTNIKKT 278
Query: 132 GESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIEKEITK 191
G+S + +R+ +++ R+ FHD+W ++ + + +++
Sbjct: 279 GKSNTNFSFEWERT---------------------VVLTRRFFHDDWEKIVEKLNEQLDT 338
Query: 192 YEVAISPLTADKASISCKEIEKARVLISNK 217
V P ADKA I K E+A ++ NK
Sbjct: 339 -TVRYKPFHADKALICFKNEEQANLICKNK 346
BLAST of Sed0000388 vs. ExPASy TrEMBL
Match:
A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 9.3e-07
Identity = 54/215 (25.12%), Postives = 96/215 (44.65%), Query Frame = 0
Query: 12 RFFKENRMGKTVVWLEKISNKRGHCADITKLSPNGQIQRIMAPIGIERKGW--------- 71
RFF E R +W++K N++G+ A+I ++ G+ I+ P G E+ GW
Sbjct: 107 RFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAQFVSLLYG 166
Query: 72 -KDILKCLNSLTSLRWDKDLSGDHSINVSTLTPDPSFKMVEENACIKGNSLEENLEAFNK 131
KD K N T L + L S S+ + D + + A IKG+S +E ++
Sbjct: 167 KKDSSKKTNYRTLL--NTKLKDGFS---SSESGDDTKRRSYAEAVIKGSSSDEETNSWTT 226
Query: 132 ESRENGESTELINENKKRSINTPKDDTTSPKIATLILAKAIIVQRKIFHDNWNELRKAIE 191
++ G+S + +R+ +++ R+ FHD+W ++ + +
Sbjct: 227 NIKKTGKSNTNFSFEWERT---------------------VVLTRRFFHDDWEKIVEKLN 286
Query: 192 KEITKYEVAISPLTADKASISCKEIEKARVLISNK 217
+++ V P ADKA I K E+A ++ NK
Sbjct: 287 EQLDT-TVRYKPFHADKALICFKNEEQANLICKNK 294
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051807.1 | 2.9e-10 | 26.64 | hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK2143... | [more] |
| KAA0035766.1 | 4.6e-08 | 24.19 | hypothetical protein E6C27_scaffold403G00440 [Cucumis melo var. makuwa] | [more] |
| KAA0040039.1 | 3.0e-07 | 25.37 | hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa] | [more] |
| TYK10355.1 | 1.5e-06 | 23.81 | hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa] | [more] |
| TYK29852.1 | 1.9e-06 | 23.26 | hypothetical protein E5676_scaffold208G00930 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DCX6 | 1.4e-10 | 26.64 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7T0M9 | 2.2e-08 | 24.19 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7TFK7 | 1.4e-07 | 25.37 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3CFS8 | 7.1e-07 | 23.81 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7U495 | 9.3e-07 | 25.12 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
