Pay0019187 (gene) Melon (Payzawat) v1

Overview
NamePay0019187
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 12595124 .. 12596411 (+)
RNA-Seq ExpressionPay0019187
SyntenyPay0019187
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCTATCTCACCACTTTAAATTTGGCAAAGTTTCTTATAGAGTGTGCTTCCATTTTACCTGAGGGAGAAACTAACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAAAATTACATTCTGAATGGATTGGACAACACGCTGTACAATGAGTATAGTAGTGTTGATTCAGCAAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAATCTGAAGTTGTTGGTGCAAAAAAATTTATCGTTGGAAAATTTCTGGATTACAAAATGGTGGACTCCAAAACTGTAATCAGTTAGGTTCAGGAAATCCAGGTAATCGTACATGATATACATGCTGAGAATATGACTTTAAGTGAGTATTTTCAGGTAGCATCAATAATTGAAAAATTTCCACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAAAGATAAAGCTTGAGGAACTTGTAGTTCGACTTGGGATTGAAGAGAATAATAGAAAGGCAGAAAAGTGTATTATAGATAGTACAATAGACCCCAAGGCCATTATTGTGGAAAATAAACCACACAGTAACAAGAAAAGGAAATTTTTTGGTGAAGGTTCAAATAAAAACCCGCGATTCACAAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAACAAAAGAACTTTCAGAAAAACATGTTCAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAGAGTGCAACATGGTGGGCAATTCCAAGGAATGGTCGGTAGACACTGGTGCTACTCGTCATATTTGTGCCAACAAGAATATGTTCACTTCATATGTGTCGTTTCTAATGGAGAACAATTATTTATGGGTAACTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACCTCTAGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCGTGACATTCGCAAGAACTTAGTTTCTGGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATGTACAATGGAAAAGGTTATGTGAGTGATGGTCCTTTAACATAAATGTCTCACAGTTGTACCAAAAGGTATAATAATAATAAAGTATCTACTTTTTGTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTTTTTTGCGTAG

mRNA sequence

ATGTTGTTCTATCTCACCACTTTAAATTTGGCAAAGTTTCTTATAGAGTGTGCTTCCATTTTACCTGAGGGAGAAACTAACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAAAATTACATTCTGAATGGATTGGACAACACGCTGTACAATGAGTATAGTAGTGTTGATTCAGCAAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAATCTGAAGTTGTTGGTGCAAAAAAATTTATCGTTGGAAAATTTCTGGATTACAAAATGGAAATCCAGGTAATCGTACATGATATACATGCTGAGAATATGACTTTAAGTGAGTATTTTCAGGTAGCATCAATAATTGAAAAATTTCCACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAAAGATAAAGCTTGAGGAACTTGTAGTTCGACTTGGGATTGAAGAGAATAATAGAAAGGCAGAAAAGTGTATTATAGATAGTACAATAGACCCCAAGGCCATTATTGTGGAAAATAAACCACACAGTAACAAGAAAAGGAAATTTTTTGGTGAAGGTTCAAATAAAAACCCGCGATTCACAAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAACAAAAGAACTTTCAGAAAAACATGTTCAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACCTCTAGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCGTGACATTCGCAAGAACTTAGTTTCTGGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATTTGTACCAAAAGGTATAATAATAATAAAGTATCTACTTTTTGTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTTTTTTGCGTAG

Coding sequence (CDS)

ATGTTGTTCTATCTCACCACTTTAAATTTGGCAAAGTTTCTTATAGAGTGTGCTTCCATTTTACCTGAGGGAGAAACTAACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAAAATTACATTCTGAATGGATTGGACAACACGCTGTACAATGAGTATAGTAGTGTTGATTCAGCAAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAATCTGAAGTTGTTGGTGCAAAAAAATTTATCGTTGGAAAATTTCTGGATTACAAAATGGAAATCCAGGTAATCGTACATGATATACATGCTGAGAATATGACTTTAAGTGAGTATTTTCAGGTAGCATCAATAATTGAAAAATTTCCACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAAAGATAAAGCTTGAGGAACTTGTAGTTCGACTTGGGATTGAAGAGAATAATAGAAAGGCAGAAAAGTGTATTATAGATAGTACAATAGACCCCAAGGCCATTATTGTGGAAAATAAACCACACAGTAACAAGAAAAGGAAATTTTTTGGTGAAGGTTCAAATAAAAACCCGCGATTCACAAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAACAAAAGAACTTTCAGAAAAACATGTTCAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACCTCTAGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCGTGACATTCGCAAGAACTTAGTTTCTGGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATTTGTACCAAAAGGTATAATAATAATAAAGTATCTACTTTTTGTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTTTTTTGCGTAG

Protein sequence

MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEYSSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKMEIQVIVHDIHAENMTLSEYFQVASIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVENKPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDCRKQKNFQKNMFKLISQKLMKYQMVEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDKFVLSKNEICTKRYNNNKVSTFCYIVESFVWHGRLGHVNFNFFA
Homology
BLAST of Pay0019187 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-06
Identity = 78/402 (19.40%), Postives = 148/402 (36.82%), Query Frame = 0

Query: 25  ETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEYSSVDSAKNLWTSLEKKYKSEVVGA 84
           ++ K   +  + W   +    + I   L + + N     D+A+ +WT LE  Y S+ +  
Sbjct: 40  DSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTN 99

Query: 85  KKFIVGK-----------FLDYKMEIQVIVHDIHAENMTLSEYFQVASIIEKFPPSWKDF 144
           K ++  +           FL +      ++  +    + + E  +   ++   P S+ + 
Sbjct: 100 KLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNL 159

Query: 145 KNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVENKPH-----SNKKR 204
              + H +  I+L+++   L + E  RK  +         +A+I E +       SN   
Sbjct: 160 ATTILHGKTTIELKDVTSALLLNEKMRKKPE------NQGQALITEGRGRSYQRSSNNYG 219

Query: 205 KFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDC---RKQK---NFQKN----------- 264
           +    G +KN   ++  N  C+NCN+ GH  +DC   RK K   + QKN           
Sbjct: 220 RSGARGKSKNRSKSRVRN--CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNN 279

Query: 265 ----------------------------------------------MFKLISQKLMKYQM 324
                                                          F  +      Y  
Sbjct: 280 DNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSK 339

Query: 325 VEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDKFVLSKNEIC 335
           + G G + +K      L L +V HV D+R NL+SG  L ++G++  F + K+ L+K  + 
Sbjct: 340 IAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLV 399

BLAST of Pay0019187 vs. ExPASy TrEMBL
Match: A0A5D3BUY6 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold755G00050 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.7e-124
Identity = 251/321 (78.19%), Postives = 266/321 (82.87%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLAKFL E A ILPEGET+KEKQLA+D WKHAEYLCKNYILNGLD TLYNEY
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDYTLYNEY 60

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKMEIQVIVHDIHAENMTLSEYFQVA 120
           SSVDSAKNLWTSLE KYK+EV GAKKFIVGKFLDYKM           ++ T      VA
Sbjct: 61  SSVDSAKNLWTSLENKYKTEVAGAKKFIVGKFLDYKM----------VDSKT------VA 120

Query: 121 SIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVEN 180
           SIIEK PPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTID KAI+VEN
Sbjct: 121 SIIEKLPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDLKAIVVEN 180

Query: 181 KPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDCRKQKNFQKNMFKLISQKL 240
           +PHSNKKRKF GEGSNKNPRFTKKFNGKCFNCNKMGHQSKDC        ++  +IS+  
Sbjct: 181 RPHSNKKRKFSGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDC------HIDLCAVISECN 240

Query: 241 M----KYQMVEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDK 300
           M    K   VE QGKVILKMTSRKELTLNNVLHV DIRKNLVSGSLLSKNGFKLVFVSDK
Sbjct: 241 MVGNSKEWWVERQGKVILKMTSRKELTLNNVLHVSDIRKNLVSGSLLSKNGFKLVFVSDK 299

Query: 301 FVLSKNEI-CTKRYNNNKVST 317
           FVLSKNE+   K Y ++ V+T
Sbjct: 301 FVLSKNEMYIGKGYLSDGVTT 299

BLAST of Pay0019187 vs. ExPASy TrEMBL
Match: A0A5A7THY2 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001460 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 8.0e-114
Identity = 242/365 (66.30%), Postives = 252/365 (69.04%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLAKFL E A IL EGET+KEKQLA+D WKHA YLCKNY LNGLDNTLYN Y
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILLEGETDKEKQLAVDAWKHAGYLCKNYTLNGLDNTLYNVY 60

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKMEIQVIVHDIHAENMTLSEYFQVA 120
           SSVDS KNLWTSLEKKY+ EV G KKFIVGKFLDYKM           ++ T      VA
Sbjct: 61  SSVDSTKNLWTSLEKKYQIEVAGVKKFIVGKFLDYKM----------VDSKT------VA 120

Query: 121 SIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVEN 180
           SIIEK PPSWKDFKNYLKHKRK+IKLEELVVRLGIEENNRKAEKCIIDS IDPKA IVEN
Sbjct: 121 SIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKAEKCIIDSRIDPKANIVEN 180

Query: 181 KPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDCRKQKNFQ----------- 240
           +PHSNKKRKFFGEGSNK PRFTKK N KCFNCNKMGHQSKD  K KNFQ           
Sbjct: 181 RPHSNKKRKFFGEGSNKKPRFTKKLNDKCFNCNKMGHQSKDYHKPKNFQKKHVQAHITEV 240

Query: 241 -----------------------------------------KNMFKLISQKLMKYQM--- 300
                                                    KNMF          Q+   
Sbjct: 241 DEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGATRHICANKNMFTSYVSVSNGEQLFMG 300

Query: 301 ------VEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDKFVL 305
                 V+ QGKVILKMTSRKELTLNNVLHV DIRKNLVSGSLLSKNGFKLVFVSDKFV 
Sbjct: 301 NSFTSKVKAQGKVILKMTSRKELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVFVSDKFVF 349

BLAST of Pay0019187 vs. ExPASy TrEMBL
Match: A0A5A7SSS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00180 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.6e-106
Identity = 201/230 (87.39%), Postives = 208/230 (90.43%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYL TLNLAKFL E A ILPEGETNKEKQLA+D WKHAEYLCKNYILNGLDNTLYN Y
Sbjct: 35  MLFYLITLNLAKFLKEDAPILPEGETNKEKQLAVDAWKHAEYLCKNYILNGLDNTLYNVY 94

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKM--------EIQVIVHDIHAENMT 120
           SSVDSAKNLWTSLEKKYK+EV GAKKFIVGKFLDYKM        ++QVI+HDIHAENMT
Sbjct: 95  SSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFLDYKMVNSKTVISQVQVILHDIHAENMT 154

Query: 121 LSEYFQVASIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTID 180
           LSE FQVASIIEK PPSWKDFKNYLKHKRK+IKLEELVVRLGIEENNRKAEKCIIDSTID
Sbjct: 155 LSESFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKAEKCIIDSTID 214

Query: 181 PKAIIVENKPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDC 223
            KA IVEN+PHSNKKRKF  EGSNK PRFTKKFNGKCFNCNKMGHQSKDC
Sbjct: 215 HKANIVENRPHSNKKRKFSCEGSNKKPRFTKKFNGKCFNCNKMGHQSKDC 264

BLAST of Pay0019187 vs. ExPASy TrEMBL
Match: A0A1S3CTZ4 (uncharacterized protein LOC103504514 OS=Cucumis melo OX=3656 GN=LOC103504514 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 5.7e-104
Identity = 218/307 (71.01%), Postives = 235/307 (76.55%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLAKFL E A ILPEGET+KEKQLA+D WKHAEYLCKNYILNGLD TLYNEY
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDYTLYNEY 60

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKM-EIQVIVHDIHAENMTLSEYFQV 120
           SSVDSAKNLWTSLE KYK+EV GAKKFIVGKFLDYKM + + ++  +        +  QV
Sbjct: 61  SSVDSAKNLWTSLENKYKTEVAGAKKFIVGKFLDYKMVDSKTVISQV--------QEIQV 120

Query: 121 ASIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVE 180
           ASIIEK PPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTID KAI+VE
Sbjct: 121 ASIIEKLPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDLKAIVVE 180

Query: 181 NKPHSNKKRKFFGEGSNKNPRFTKKFN--GKCFNCNKMGHQSKDCRKQKNFQKNMFKLIS 240
           N+PHSNKKRKF GE  ++        +       CN +G+                    
Sbjct: 181 NRPHSNKKRKFSGEEVDEVSDGVADIDLCAVISECNMVGNS------------------- 240

Query: 241 QKLMKYQMVEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDKF 300
               K   VE QGKVILKMTSRKELTLNNVLHV DIRKNLVSGSLLSKNGFKLVFVSDKF
Sbjct: 241 ----KEWWVERQGKVILKMTSRKELTLNNVLHVSDIRKNLVSGSLLSKNGFKLVFVSDKF 276

Query: 301 VLSKNEI 305
           VLSKNE+
Sbjct: 301 VLSKNEM 276

BLAST of Pay0019187 vs. ExPASy TrEMBL
Match: A5CBN2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 4.5e-101
Identity = 212/388 (54.64%), Postives = 265/388 (68.30%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLA+FL E   IL EGETNKEK   +D WKH+++LC+NY+LNGLDNTLYN Y
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKM-----------EIQVIVHDIHAE 120
            S+ +AK LW SL+KKYK+E  G KKFIVGKFLD+KM           E+QVI+H+IH+E
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345

Query: 121 NMTLSEYFQVASIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDS 180
            M+ S+ FQVA++IEK PP WKDFKNYLKHKRK++ LEEL+VRL IEE+NRK+EK   ++
Sbjct: 346 GMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEK-KGNN 405

Query: 181 TIDPKAIIVENKPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDCRKQKNF- 240
           +++ KA ++E  P +NKKRK   +  N+     KKF GKC+NC K GH+S D R  K + 
Sbjct: 406 SMEAKANVIEQGPKTNKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYRNTKEWW 465

Query: 241 -----------QKNMF---KLISQKLMKY------QMVEGQGKVILKMTSRKELTLNNVL 300
                       K MF   K + Q    +        +EG+GKVILKMTS KELTLN+VL
Sbjct: 466 VDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVL 525

Query: 301 HVRDIRKNLVSGSLLSKNGFKLVFVSDKFVLSKNE-------------------ICTKRY 337
           HV DI KNLVSGSLLSKNGFKLVFVSDKFVL+KNE                   +  K  
Sbjct: 526 HVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMTVVPKSI 585

BLAST of Pay0019187 vs. NCBI nr
Match: TYK02905.1 (pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 455.7 bits (1171), Expect = 3.5e-124
Identity = 251/321 (78.19%), Postives = 266/321 (82.87%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLAKFL E A ILPEGET+KEKQLA+D WKHAEYLCKNYILNGLD TLYNEY
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDYTLYNEY 60

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKMEIQVIVHDIHAENMTLSEYFQVA 120
           SSVDSAKNLWTSLE KYK+EV GAKKFIVGKFLDYKM           ++ T      VA
Sbjct: 61  SSVDSAKNLWTSLENKYKTEVAGAKKFIVGKFLDYKM----------VDSKT------VA 120

Query: 121 SIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVEN 180
           SIIEK PPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTID KAI+VEN
Sbjct: 121 SIIEKLPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDLKAIVVEN 180

Query: 181 KPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDCRKQKNFQKNMFKLISQKL 240
           +PHSNKKRKF GEGSNKNPRFTKKFNGKCFNCNKMGHQSKDC        ++  +IS+  
Sbjct: 181 RPHSNKKRKFSGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDC------HIDLCAVISECN 240

Query: 241 M----KYQMVEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDK 300
           M    K   VE QGKVILKMTSRKELTLNNVLHV DIRKNLVSGSLLSKNGFKLVFVSDK
Sbjct: 241 MVGNSKEWWVERQGKVILKMTSRKELTLNNVLHVSDIRKNLVSGSLLSKNGFKLVFVSDK 299

Query: 301 FVLSKNEI-CTKRYNNNKVST 317
           FVLSKNE+   K Y ++ V+T
Sbjct: 301 FVLSKNEMYIGKGYLSDGVTT 299

BLAST of Pay0019187 vs. NCBI nr
Match: KAA0042920.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 420.2 bits (1079), Expect = 1.6e-113
Identity = 242/365 (66.30%), Postives = 252/365 (69.04%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLAKFL E A IL EGET+KEKQLA+D WKHA YLCKNY LNGLDNTLYN Y
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILLEGETDKEKQLAVDAWKHAGYLCKNYTLNGLDNTLYNVY 60

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKMEIQVIVHDIHAENMTLSEYFQVA 120
           SSVDS KNLWTSLEKKY+ EV G KKFIVGKFLDYKM           ++ T      VA
Sbjct: 61  SSVDSTKNLWTSLEKKYQIEVAGVKKFIVGKFLDYKM----------VDSKT------VA 120

Query: 121 SIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVEN 180
           SIIEK PPSWKDFKNYLKHKRK+IKLEELVVRLGIEENNRKAEKCIIDS IDPKA IVEN
Sbjct: 121 SIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKAEKCIIDSRIDPKANIVEN 180

Query: 181 KPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDCRKQKNFQ----------- 240
           +PHSNKKRKFFGEGSNK PRFTKK N KCFNCNKMGHQSKD  K KNFQ           
Sbjct: 181 RPHSNKKRKFFGEGSNKKPRFTKKLNDKCFNCNKMGHQSKDYHKPKNFQKKHVQAHITEV 240

Query: 241 -----------------------------------------KNMFKLISQKLMKYQM--- 300
                                                    KNMF          Q+   
Sbjct: 241 DEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGATRHICANKNMFTSYVSVSNGEQLFMG 300

Query: 301 ------VEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDKFVL 305
                 V+ QGKVILKMTSRKELTLNNVLHV DIRKNLVSGSLLSKNGFKLVFVSDKFV 
Sbjct: 301 NSFTSKVKAQGKVILKMTSRKELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVFVSDKFVF 349

BLAST of Pay0019187 vs. NCBI nr
Match: KAA0032601.1 (uncharacterized protein E6C27_scaffold43053G00700 [Cucumis melo var. makuwa] >TYK20884.1 uncharacterized protein E5676_scaffold284G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 396.0 bits (1016), Expect = 3.3e-106
Identity = 201/230 (87.39%), Postives = 208/230 (90.43%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYL TLNLAKFL E A ILPEGETNKEKQLA+D WKHAEYLCKNYILNGLDNTLYN Y
Sbjct: 35  MLFYLITLNLAKFLKEDAPILPEGETNKEKQLAVDAWKHAEYLCKNYILNGLDNTLYNVY 94

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKM--------EIQVIVHDIHAENMT 120
           SSVDSAKNLWTSLEKKYK+EV GAKKFIVGKFLDYKM        ++QVI+HDIHAENMT
Sbjct: 95  SSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFLDYKMVNSKTVISQVQVILHDIHAENMT 154

Query: 121 LSEYFQVASIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTID 180
           LSE FQVASIIEK PPSWKDFKNYLKHKRK+IKLEELVVRLGIEENNRKAEKCIIDSTID
Sbjct: 155 LSESFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKAEKCIIDSTID 214

Query: 181 PKAIIVENKPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDC 223
            KA IVEN+PHSNKKRKF  EGSNK PRFTKKFNGKCFNCNKMGHQSKDC
Sbjct: 215 HKANIVENRPHSNKKRKFSCEGSNKKPRFTKKFNGKCFNCNKMGHQSKDC 264

BLAST of Pay0019187 vs. NCBI nr
Match: XP_008467076.1 (PREDICTED: uncharacterized protein LOC103504514, partial [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-103
Identity = 218/307 (71.01%), Postives = 235/307 (76.55%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLAKFL E A ILPEGET+KEKQLA+D WKHAEYLCKNYILNGLD TLYNEY
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDYTLYNEY 60

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKM-EIQVIVHDIHAENMTLSEYFQV 120
           SSVDSAKNLWTSLE KYK+EV GAKKFIVGKFLDYKM + + ++  +        +  QV
Sbjct: 61  SSVDSAKNLWTSLENKYKTEVAGAKKFIVGKFLDYKMVDSKTVISQV--------QEIQV 120

Query: 121 ASIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDPKAIIVE 180
           ASIIEK PPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTID KAI+VE
Sbjct: 121 ASIIEKLPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDLKAIVVE 180

Query: 181 NKPHSNKKRKFFGEGSNKNPRFTKKFN--GKCFNCNKMGHQSKDCRKQKNFQKNMFKLIS 240
           N+PHSNKKRKF GE  ++        +       CN +G+                    
Sbjct: 181 NRPHSNKKRKFSGEEVDEVSDGVADIDLCAVISECNMVGNS------------------- 240

Query: 241 QKLMKYQMVEGQGKVILKMTSRKELTLNNVLHVRDIRKNLVSGSLLSKNGFKLVFVSDKF 300
               K   VE QGKVILKMTSRKELTLNNVLHV DIRKNLVSGSLLSKNGFKLVFVSDKF
Sbjct: 241 ----KEWWVERQGKVILKMTSRKELTLNNVLHVSDIRKNLVSGSLLSKNGFKLVFVSDKF 276

Query: 301 VLSKNEI 305
           VLSKNE+
Sbjct: 301 VLSKNEM 276

BLAST of Pay0019187 vs. NCBI nr
Match: CAN66576.1 (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 377.9 bits (969), Expect = 9.4e-101
Identity = 212/388 (54.64%), Postives = 265/388 (68.30%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIECASILPEGETNKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNEY 60
           MLFYLTTLNLA+FL E   IL EGETNKEK   +D WKH+++LC+NY+LNGLDNTLYN Y
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285

Query: 61  SSVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKM-----------EIQVIVHDIHAE 120
            S+ +AK LW SL+KKYK+E  G KKFIVGKFLD+KM           E+QVI+H+IH+E
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345

Query: 121 NMTLSEYFQVASIIEKFPPSWKDFKNYLKHKRKKIKLEELVVRLGIEENNRKAEKCIIDS 180
            M+ S+ FQVA++IEK PP WKDFKNYLKHKRK++ LEEL+VRL IEE+NRK+EK   ++
Sbjct: 346 GMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEK-KGNN 405

Query: 181 TIDPKAIIVENKPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCNKMGHQSKDCRKQKNF- 240
           +++ KA ++E  P +NKKRK   +  N+     KKF GKC+NC K GH+S D R  K + 
Sbjct: 406 SMEAKANVIEQGPKTNKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYRNTKEWW 465

Query: 241 -----------QKNMF---KLISQKLMKY------QMVEGQGKVILKMTSRKELTLNNVL 300
                       K MF   K + Q    +        +EG+GKVILKMTS KELTLN+VL
Sbjct: 466 VDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVL 525

Query: 301 HVRDIRKNLVSGSLLSKNGFKLVFVSDKFVLSKNE-------------------ICTKRY 337
           HV DI KNLVSGSLLSKNGFKLVFVSDKFVL+KNE                   +  K  
Sbjct: 526 HVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMTVVPKSI 585

BLAST of Pay0019187 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-10
Identity = 70/257 (27.24%), Postives = 111/257 (43.19%), Query Frame = 0

Query: 1   MLFYLTTLNLAKFLIE-CASI-LPEG-ETNKEKQLAIDV----WKHAEYLCKNYILNGLD 60
           M  +L  L L   L E C SI   +G ETN  +    D     W   +YLC  +++N L 
Sbjct: 210 MELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWLRDDYLCYTHLMNSLS 269

Query: 61  NTLYNEYS-SVDSAKNLWTSLEKKYKSEVVGAKKFIVGKFLDYKM--------EIQV--- 120
           + LY  YS     AK LW  L+  Y+ +   +K+  V K+++++M        ++QV   
Sbjct: 270 DHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNK 329

Query: 121 IVHDIHAENMTLSEYFQVASIIEKFPPSWKDFKNYLKHKR--------KKIKLEELVVRL 180
           I   I +  M L E F V++II KFPPSW+ F   L  +         +++K EE ++R 
Sbjct: 330 IADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLPVWMLMERVKAEEELLRN 389

Query: 181 GIEENNRKAEKCIIDSTIDPKAIIVENKPHSNKKRKFFGEGSNKNPRFTKKFNGKCFNCN 231
           G +    +           P          S   ++       K P   ++    C NC 
Sbjct: 390 GAKGVTYRPATGSSQMERTPSLGTTHRGSQSVGWKR-------KEPERDERVIIVCDNCG 449

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109781.1e-0619.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5D3BUY61.7e-12478.19Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold755G0005... [more]
A0A5A7THY28.0e-11466.30Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G0014... [more]
A0A5A7SSS01.6e-10687.39CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3CTZ45.7e-10471.01uncharacterized protein LOC103504514 OS=Cucumis melo OX=3656 GN=LOC103504514 PE=... [more]
A5CBN24.5e-10154.64Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
TYK02905.13.5e-12478.19pol polyprotein [Cucumis melo var. makuwa][more]
KAA0042920.11.6e-11366.30pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis ... [more]
KAA0032601.13.3e-10687.39uncharacterized protein E6C27_scaffold43053G00700 [Cucumis melo var. makuwa] >TY... [more]
XP_008467076.11.2e-10371.01PREDICTED: uncharacterized protein LOC103504514, partial [Cucumis melo][more]
CAN66576.19.4e-10154.64hypothetical protein VITISV_016964 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT4G00980.11.6e-1027.24zinc knuckle (CCHC-type) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 208..224
e-value: 1.2E-4
score: 31.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 207..224
e-value: 6.3E-6
score: 26.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 208..224
score: 10.081271
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 37..162
e-value: 1.1E-11
score: 44.6
NoneNo IPR availableGENE3D4.10.60.10coord: 183..251
e-value: 7.3E-6
score: 27.7
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 241..302
coord: 1..232
NoneNo IPR availablePANTHERPTHR47592:SF11SUBFAMILY NOT NAMEDcoord: 241..302
NoneNo IPR availablePANTHERPTHR47592:SF11SUBFAMILY NOT NAMEDcoord: 1..232
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 199..233

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0019187.1Pay0019187.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding