Pay0018939 (gene) Melon (Payzawat) v1

Overview


Name	Pay0018939
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	High mobility group protein
Location	chr06: 35875498 .. 35878020 (-)
RNA-Seq Expression	Pay0018939
Synteny	Pay0018939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCCGCACTAAGGAAGGGACGAGTTGTAGGAAGGGAGGGGTAAACTGGTGATTTCGCATTCAAACAACGGGCTTTAACTCACGTGTCCGGATCTGTTGAGAGGGAACAATTCACAGCGAGGAAATTGCAAATAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGACGAAGAGTAGCCAATGAGAAAAAAGGACGAGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGGAGTTTCAATTGATATCGCGATTTATCTCTCCCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCTCTCGCTCCCTCTTCACTTCAAAGGGCTTTTCCTTCTTTCCACATAAACACACGCACTCGAAGCCAATCTCAAAACCGCATCACACGAACCAAACTAAGCCTAACCCAATTTTTTCTCCTCATATTTCACTCTCACACTCTTTCCTTATCTTCTTCTTCCCCCAAACCCTAGAGTTTTACAGGTAAACTCCCAATCTCTCCGCCGCTCCCTCGCTCGATTCTCCTTCGTTTCTCCGCCTTTTTTCTTATAATCATTACCTGTTTTCTCCTTCCCTCTATCTGCAGGATTCATCATGAAGGGCGGTAAATCCAAGGGGGCGCCTAAAAAGACCGATACCAAGTGAGTTCATCGATAACTTTTTATGTATATTTTTATCTATATGTGTTAGTATGTTTCGGAGTAGGCAGTTGGATCGGATACGTTCGTTTTGTAATGTTTGATTCTCTTCTCAGTTATTTATTATGTGTTTTGTTATTTGATTATTGTTAGGTTGAAGAGCAAAAGTGCCGGAGCTAGTAAGAAATCAGCGAAGGCTGCAAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGTACATCTCTCTTTCTCAAACCTATCCTGTTTTTTACCTTCGATTTTCAGATCCGTATTTTTTGTGGAATTTTTTCTGGTTTGATTTATTTGTTGATTTTTATATAGGGAGGAGTTCAGGAAGCAATACAAGAAGGAACATCCTAACAACAAATCCGTCGCCGCCGTAAGTAATTTTAGATCTGTTCATTGCTTTTCTTTTTTGTTTTGTAGTAGATTCTTAACTTTTTAAAAGTTCTCTCGTTTGGTCAAATAAACAGGTTGGAAAGGCTGGTGGTGATAAATGGAAGTCAATGTCCGACGCTGTAAGTTATATTACATGGACTTTGAAGCTATTTTATACCATCTCTTGTGAAAATTGCAACAAATTACTTATTGCTCATATGATTACGTTATTTGCAGGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAGTACAACAAGAGCATGCAGGCTTATAATAAGAGAATTGTACGTTCTCGTATGATATTTTCCTAATTGTATTTCTACACATTATTGTTCTCAAGCGTCTTAATCATGTTTCAAATTCTGTTAGGCGGAGGGAGGTAATGGAGCCGAAGAAGAAGAATCAGATAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGTTCGTTAACATTTTATGCCTGAATTTTTTTCCATTTTAGATAAAAAACGAAGCAATGATTGCCTGACAATAGTTTATTCTGAATTGCAGGACGAAGATGATGAGTAAATGTTTAGGAGACGAGGAATGATGTGGTGGAAGAAGAACAAGCGTTTTTAACTCCTTCATAGTTCGGAGCAAAGACTCAGCAATTTAGATTTTTCTTTATTATGTCTTGGATAAATAGCTACTTCTTTTTTCCTTTTTTTTTTTTTGGTAATTAGGATAGAATGGGAGAAAAGAAATCAAAACAAAAAGGAAGGTTCGTGTTTGATGTTAGATTTCTTAAGTTGACATGGATATGTATTCAAGGAAAAATCTGTGTTAGTAATTGCACAATGATTCAGTTTTAGTTCCATTATTCTACTGATCTTGATCTTCATCAACTCTCTTTTCTATTTCTATTCACCAATGAAATGAATGAGTGAGCTTAATATACAACGGAATAGGTTGGTTAGTTGTCATTTTCTTGCTGACAGGATTGGAGTTGGAAAGTTTGTTTGATTCTTCTGCCTTGTTCTAAGCTTTTTCAATTGGTGATTGAAATGATAGTGTTGGTTGACTTTACCTCGTCTTCTTTTTTTCCCATTGACTGTGTTGTTTTTAACTATTGCATCATCATCATCAGCCCCTCTTTTGATTTCTCTCACCAAAATTTAAAAATGACCTATTTTGGATTGTGGTGAGATGGGGAGAAGTCAAACTTAAGGTTCCATCTGGTCTGGTAGTCCTTTGTGTTATCTATCAGTTGTTTTGCACAGATGCTGTTTTGGCATTTTGGATGGAATGATATGTAAAAAAATGATTTCTGACAGTTGCCTTTACAATTCTAGCCGTTATGTAAAAATTATATGTATATCAACACTTTATTATTCTATGTTTTTGCTCATTTCTCTGTAATCATAATCTG

mRNA sequence

GTTCCGCACTAAGGAAGGGACGAGTTGTAGGAAGGGAGGGGTAAACTGGTGATTTCGCATTCAAACAACGGGCTTTAACTCACGTGTCCGGATCTGTTGAGAGGGAACAATTCACAGCGAGGAAATTGCAAATAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGACGAAGAGTAGCCAATGAGAAAAAAGGACGAGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGGAGTTTCAATTGATATCGCGATTTATCTCTCCCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCTCTCGCTCCCTCTTCACTTCAAAGGGCTTTTCCTTCTTTCCACATAAACACACGCACTCGAAGCCAATCTCAAAACCGCATCACACGAACCAAACTAAGCCTAACCCAATTTTTTCTCCTCATATTTCACTCTCACACTCTTTCCTTATCTTCTTCTTCCCCCAAACCCTAGAGTTTTACAGGATTCATCATGAAGGGCGGTAAATCCAAGGGGGCGCCTAAAAAGACCGATACCAAGTTGAAGAGCAAAAGTGCCGGAGCTAGTAAGAAATCAGCGAAGGCTGCAAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAATACAAGAAGGAACATCCTAACAACAAATCCGTCGCCGCCGTTGGAAAGGCTGGTGGTGATAAATGGAAGTCAATGTCCGACGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAGTACAACAAGAGCATGCAGGCTTATAATAAGAGAATTGCGGAGGGAGGTAATGGAGCCGAAGAAGAAGAATCAGATAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGACGAAGATGATGAGTAAATGTTTAGGAGACGAGGAATGATGTGGTGGAAGAAGAACAAGCGTTTTTAACTCCTTCATAGTTCGGAGCAAAGACTCAGCAATTTAGATTTTTCTTTATTATGTCTTGGATAAATAGCTACTTCTTTTTTCCTTTTTTTTTTTTTGGTAATTAGGATAGAATGGGAGAAAAGAAATCAAAACAAAAAGGAAGGTTCGTGTTTGATGTTAGATTTCTTAAGTTGACATGGATATGTATTCAAGGAAAAATCTGTGTTAGTAATTGCACAATGATTCAGTTTTAGTTCCATTATTCTACTGATCTTGATCTTCATCAACTCTCTTTTCTATTTCTATTCACCAATGAAATGAATGAGTGAGCTTAATATACAACGGAATAGGTTGGTTAGTTGTCATTTTCTTGCTGACAGGATTGGAGTTGGAAAGTTTGTTTGATTCTTCTGCCTTGTTCTAAGCTTTTTCAATTGGTGATTGAAATGATAGTGTTGGTTGACTTTACCTCGTCTTCTTTTTTTCCCATTGACTGTGTTGTTTTTAACTATTGCATCATCATCATCAGCCCCTCTTTTGATTTCTCTCACCAAAATTTAAAAATGACCTATTTTGGATTGTGGTGAGATGGGGAGAAGTCAAACTTAAGGTTCCATCTGGTCTGGTAGTCCTTTGTGTTATCTATCAGTTGTTTTGCACAGATGCTGTTTTGGCATTTTGGATGGAATGATATGTAAAAAAATGATTTCTGACAGTTGCCTTTACAATTCTAGCCGTTATGTAAAAATTATATGTATATCAACACTTTATTATTCTATGTTTTTGCTCATTTCTCTGTAATCATAATCTG

Coding sequence (CDS)

ATGAAGGGCGGTAAATCCAAGGGGGCGCCTAAAAAGACCGATACCAAGTTGAAGAGCAAAAGTGCCGGAGCTAGTAAGAAATCAGCGAAGGCTGCAAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAATACAAGAAGGAACATCCTAACAACAAATCCGTCGCCGCCGTTGGAAAGGCTGGTGGTGATAAATGGAAGTCAATGTCCGACGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAGTACAACAAGAGCATGCAGGCTTATAATAAGAGAATTGCGGAGGGAGGTAATGGAGCCGAAGAAGAAGAATCAGATAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGACGAAGATGATGAGTAA

Protein sequence

MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE

Homology

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BLAST of Pay0018939 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.0e-39
Identity = 102/147 (69.39%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLK-SKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSK    K+D KL   K A  +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSVA VGKAGGDKWK ++ AEKAP+I+KAEKRK EY K++QAYNK+ A G   AEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 121 EESDKSKSEVNDDDEDDDESGEDEDDE 147
           EESDKS+SEVNDDDED D SGED+ ++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSED 142

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BLAST of Pay0018939 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-39
Identity = 99/152 (65.13%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK   K+ D KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  QYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGG 120
            + KEHP NK+V+AVGKA G KWK+MSDAEKAPY+ K+EKRK EY K+M+AYNK+ AEG 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 147
            G +EEES+KS SEVND+D+D++ SGE+EDD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

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BLAST of Pay0018939 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-34
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKS SEVND+D+ +D S E+EDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

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BLAST of Pay0018939 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-33
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKS SEVND+D+ +D S E+EDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

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BLAST of Pay0018939 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.4e-33
Identity = 96/153 (62.75%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGAS-----KKSAKA--AKDPNKPKRPASAFFVFMEEFR 60
           MKGGKSKG  KK +TKL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 61  KQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 120
           +QYKK+HPNNKSVAAVGKA G++WKS+S+ EKAPY+++A K+K EY  ++QAYNK++ EG
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 120

Query: 121 GNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 147
            +  +EE SDKSKSEVND+DED+++  EDEDD+
Sbjct: 121 KD--DEEGSDKSKSEVNDEDEDEEDE-EDEDDD 149

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BLAST of Pay0018939 vs. ExPASy TrEMBL
Match: Q4ZH67 (High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGEDEDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

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BLAST of Pay0018939 vs. ExPASy TrEMBL
Match: A0A1S3BJR7 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGEDEDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

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BLAST of Pay0018939 vs. ExPASy TrEMBL
Match: A0A6J1CVX4 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 92  MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 151

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEE
Sbjct: 152 PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 211

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDD++DDESGE+EDDE
Sbjct: 212 ESDKSKSEVNDDDDEDDESGEEEDDE 237

[Close]

BLAST of Pay0018939 vs. ExPASy TrEMBL
Match: A0A6J1KZ83 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.1e-59
Identity = 134/146 (91.78%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVND+DEDDDESGE++DDE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGEEDDDE 146

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BLAST of Pay0018939 vs. ExPASy TrEMBL
Match: A0A6J1E6E0 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.1e-59
Identity = 134/146 (91.78%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVND+DEDDDESGE++DDE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGEEDDDE 146

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BLAST of Pay0018939 vs. NCBI nr
Match: NP_001267705.1 (HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-like protein [Cucumis melo] >AAY26151.1 high mobility group protein [Cucumis sativus] >KAE8649989.1 hypothetical protein Csa_010903 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 2.3e-64
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGEDEDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

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BLAST of Pay0018939 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 7.5e-63
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGE++DDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 146

[Close]

BLAST of Pay0018939 vs. NCBI nr
Match: XP_022145438.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 92  MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 151

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEE
Sbjct: 152 PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 211

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDD++DDESGE+EDDE
Sbjct: 212 ESDKSKSEVNDDDDEDDESGEEEDDE 237

[Close]

BLAST of Pay0018939 vs. NCBI nr
Match: KAG6577813.1 (hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-59
Identity = 134/146 (91.78%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 12  MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 71

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEE
Sbjct: 72  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 131

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVND+DEDDDESGE++DDE
Sbjct: 132 ESDKSKSEVNDEDEDDDESGEEDDDE 157

[Close]

BLAST of Pay0018939 vs. NCBI nr
Match: XP_022923434.1 (HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cucurbita moschata] >XP_023007627.1 HMG1/2-like protein [Cucurbita maxima] >XP_023007628.1 HMG1/2-like protein [Cucurbita maxima] >XP_023552251.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-59
Identity = 134/146 (91.78%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVND+DEDDDESGE++DDE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGEEDDDE 146

[Close]

BLAST of Pay0018939 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKS SEVND+D+ +D S E+EDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Pay0018939 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-35
Identity = 90/141 (63.83%), Postives = 109/141 (77.30%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGE 142
           ESDKS SEVND+D+ +D S E
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of Pay0018939 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 144.1 bits (362), Expect = 9.2e-35
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKS SEVND+D+ +D S E+EDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Pay0018939 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 144.1 bits (362), Expect = 9.2e-35
Identity = 89/144 (61.81%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDED 145
           ESDKS SEVND+D+ +D S ED+D
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEDDD 142

[Close]

BLAST of Pay0018939 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34
Identity = 89/145 (61.38%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDD 146
           ESDKS SEVND+D+ +D S E++DD
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEDDD 143

The following BLAST results are available for this feature:

BLAST of Pay0018939 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40619	6.0e-39	69.39	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	7.8e-39	65.13	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	1.5e-34	63.70	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	1.3e-33	61.64	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40620	8.4e-33	62.75	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of Pay0018939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q4ZH67	1.1e-64	100.00	High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A1S3BJR7	1.1e-64	100.00	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1	[more]
A0A6J1CVX4	1.3e-60	94.52	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1	[more]
A0A6J1KZ83	4.1e-59	91.78	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1	[more]
A0A6J1E6E0	4.1e-59	91.78	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1	[more]

BLAST of Pay0018939 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001267705.1	2.3e-64	100.00	HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-lik...	[more]
XP_038904814.1	7.5e-63	97.95	HMG1/2-like protein [Benincasa hispida]	[more]
XP_022145438.1	2.7e-60	94.52	HMG1/2-like protein [Momordica charantia]	[more]
KAG6577813.1	8.5e-59	91.78	hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923434.1	8.5e-59	91.78	HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cu...	[more]

BLAST of Pay0018939 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	1.1e-35	63.70	high mobility group B3	[more]
AT1G20696.3	4.1e-35	63.83	high mobility group B3	[more]
AT1G20693.1	9.2e-35	61.64	high mobility group B2	[more]
AT1G20693.2	9.2e-35	61.81	high mobility group B2	[more]
AT1G20693.3	1.6e-34	61.38	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..146
None	No IPR available	PANTHER	PTHR46261:SF18	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..144
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 38..104 e-value: 2.89091E-17 score: 69.1937
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 37..108 e-value: 4.4E-27 score: 106.0
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 38..107 e-value: 2.5E-23 score: 82.3
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 38..107 score: 20.542439
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 33..110 e-value: 5.2E-27 score: 96.1
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 30..111
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0018939.1	Pay0018939.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0017111	nucleoside-triphosphatase activity
molecular_function	GO:0030527	structural constituent of chromatin