Pay0018218 (gene) Melon (Payzawat) v1

Overview


Name	Pay0018218
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribosomal protein L10
Location	chr07: 1016488 .. 1016973 (-)
RNA-Seq Expression	Pay0018218
Synteny	Pay0018218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTCGGAATCAGTCTTCTACGGAGGGAAAGCCTGTTACGATTAATCTTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAAGCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTCTTGCTCAACCGGAAAAAAGAAGGGCTTTTTCGCACAGCTTGCTCATAGTGCGGGTCCCACTTTGATATTGTATTTGTCCGAAGAAGGATCGGACAGGTTGGAGTTCTTACCTTCTTCGGACTCTATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCGACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCGGATTTGAATGAATGTTCAAGATCTCTTTTCCATTTCTATTTACCCAGTTCATATCTTTCTTTCGTGTGTTCCCGGGAGGAATTCGATCTCGGGATACCACCTAAATAA

mRNA sequence

ATGCCATTCGGAATCAGTCTTCTACGGAGGGAAAGCCTGTTACGATTAATCTTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAAGCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTCTTGCTCAACCGGAAAAAAGAAGGGCTTTTTCGCACAGCTTGCTCATAGTGCGGGTCCCACTTTGATATTGTATTTGTCCGAAGAAGGATCGGACAGGTTGGAGTTCTTACCTTCTTCGGACTCTATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCGACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCGGATTTGAATGAATGTTCAAGATCTCTTTTCCATTTCTATTTACCCAGTTCATATCTTTCTTTCGTGTGTTCCCGGGAGGAATTCGATCTCGGGATACCACCTAAATAA

Coding sequence (CDS)

ATGCCATTCGGAATCAGTCTTCTACGGAGGGAAAGCCTGTTACGATTAATCTTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAAGCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTCTTGCTCAACCGGAAAAAAGAAGGGCTTTTTCGCACAGCTTGCTCATAGTGCGGGTCCCACTTTGATATTGTATTTGTCCGAAGAAGGATCGGACAGGTTGGAGTTCTTACCTTCTTCGGACTCTATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCGACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCGGATTTGAATGAATGTTCAAGATCTCTTTTCCATTTCTATTTACCCAGTTCATATCTTTCTTTCGTGTGTTCCCGGGAGGAATTCGATCTCGGGATACCACCTAAATAA

Protein sequence

MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSCSTGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK

Homology

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BLAST of Pay0018218 vs. ExPASy Swiss-Prot
Match: P38450 (Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha OX=3197 GN=YMF1 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.8e-16
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 21  EERSPEILISFHSSGSTSKQWRKLKN--PWFPGRTPFRP----SSCSTGKKKGFFAQLAH 80
           +++ P IL+ FH SG TS+QWR++KN      G+T F+P     +     +  + AQLA 
Sbjct: 24  KKQYPYILL-FHCSGLTSRQWRQIKNILCTIKGKTLFKPKEKKQNILPNNQGDWIAQLAS 83

Query: 81  SAGPTLILYLSEEGSDRL--EFLPSSDSMDQDLLSLYGQYRSTLVDHMDVEKASDLNECS 140
           SAGPT ILYL++E  +    + LPS+ S  Q+L+ LYGQ RST+ +HMD++KA+ L   S
Sbjct: 84  SAGPTCILYLAKEAPNNTWSQLLPSA-SYSQNLVLLYGQDRSTVFNHMDIKKATTLETTS 143

Query: 141 --RSLFHF-YLPSSYLSFV 149
             + LF F +LP +   F+
Sbjct: 144 VFQQLFGFMFLPGACFLFL 160

[Close]

BLAST of Pay0018218 vs. ExPASy TrEMBL
Match: A0A5A7UY09 (Ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold47200G00020 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.2e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC
Sbjct: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
           STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 161

[Close]

BLAST of Pay0018218 vs. ExPASy TrEMBL
Match: G3EU29 (Uncharacterized protein ORF2 OS=Cucumis melo subsp. melo OX=412675 GN=ORF2 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.2e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC
Sbjct: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
           STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 161

[Close]

BLAST of Pay0018218 vs. ExPASy TrEMBL
Match: A0A3Q9CRZ2 (Ribosomal protein L10 OS=Cucumis melo var. momordica OX=2034244 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.2e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC
Sbjct: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
           STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 161

[Close]

BLAST of Pay0018218 vs. ExPASy TrEMBL
Match: G3EIX9 (Ribosomal protein L10 OS=Cucumis sativus OX=3659 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.0e-84
Identity = 159/163 (97.55%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPG--RTPFRPS 60
           MPFGISLLRRESL RLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPG  RTPFRPS
Sbjct: 1   MPFGISLLRRESLRRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTRTPFRPS 60

Query: 61  SCSTGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVD 120
           SCSTGKKKGFFAQLAHSAGPT ILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVD
Sbjct: 61  SCSTGKKKGFFAQLAHSAGPTCILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVD 120

Query: 121 HMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           HMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 HMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 163

[Close]

BLAST of Pay0018218 vs. ExPASy TrEMBL
Match: A0A7D5Y0N6 (Ribosomal protein L10 OS=Luffa acutangula OX=56866 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.0e-75
Identity = 145/161 (90.06%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFG SLL+RESLLR  +SGEERSPEILISFHSSGSTS QWRKLKNPWFPGRTPFRPS C
Sbjct: 1   MPFGRSLLQRESLLR--VSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
            TGKKK FFAQLAHSAGPT ILYL+EE SDRLEFLPS DSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  ETGKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           DVEKASDLNE   SLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 DVEKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK 159

[Close]

BLAST of Pay0018218 vs. NCBI nr
Match: AEN56113.1 (hypothetical protein [Cucumis melo subsp. melo] >AZP40279.1 ribosomal protein L10 [Cucumis melo var. momordica] >KAA0059076.1 ribosomal protein L10 [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 2.4e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC
Sbjct: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
           STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 161

[Close]

BLAST of Pay0018218 vs. NCBI nr
Match: YP_004849327.1 (ribosomal protein L10 [Cucumis sativus] >ADZ10754.1 ribosomal protein L10 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-83
Identity = 159/163 (97.55%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPG--RTPFRPS 60
           MPFGISLLRRESL RLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPG  RTPFRPS
Sbjct: 1   MPFGISLLRRESLRRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTRTPFRPS 60

Query: 61  SCSTGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVD 120
           SCSTGKKKGFFAQLAHSAGPT ILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVD
Sbjct: 61  SCSTGKKKGFFAQLAHSAGPTCILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVD 120

Query: 121 HMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           HMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 HMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 163

[Close]

BLAST of Pay0018218 vs. NCBI nr
Match: YP_009913631.1 (ribosomal protein L10 [Luffa acutangula] >QLJ93021.1 ribosomal protein L10 [Luffa acutangula])

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-75
Identity = 145/161 (90.06%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFG SLL+RESLLR  +SGEERSPEILISFHSSGSTS QWRKLKNPWFPGRTPFRPS C
Sbjct: 1   MPFGRSLLQRESLLR--VSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
            TGKKK FFAQLAHSAGPT ILYL+EE SDRLEFLPS DSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  ETGKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK 162
           DVEKASDLNE   SLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 DVEKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK 159

[Close]

BLAST of Pay0018218 vs. NCBI nr
Match: QEX95855.1 (ribosomal protein L10 [Cercis canadensis])

HSP 1 Score: 279.6 bits (714), Expect = 1.7e-71
Identity = 141/164 (85.98%), Postives = 146/164 (89.02%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFG SLL+RESLLR  +SGEERSPEILISFHSSGSTS QWRKLKNPWFPGRTPFRPS C
Sbjct: 1   MPFGRSLLQRESLLR--VSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
            TGKKK FFAQLAHSAGPT ILYL+EE +DRLEFLPS DSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  ETGKKKRFFAQLAHSAGPTCILYLAEEAADRLEFLPSWDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFD---LGIPPK 162
           DVEKASD +E   SLFHFYLPSSYL FVCSREEFD   LGIPPK
Sbjct: 121 DVEKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 162

[Close]

BLAST of Pay0018218 vs. NCBI nr
Match: OVA11595.1 (hypothetical protein BVC80_967g3 [Macleaya cordata])

HSP 1 Score: 278.9 bits (712), Expect = 2.8e-71
Identity = 141/164 (85.98%), Postives = 146/164 (89.02%), Query Frame = 0


Query: 1   MPFGISLLRRESLLRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTPFRPSSC 60
           MPFG SLL+RESLLR  +SGEERSPEILISFHSSGSTS QWRKLKNPWFPGRTPFRPS C
Sbjct: 1   MPFGRSLLQRESLLR--VSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC 60

Query: 61  STGKKKGFFAQLAHSAGPTLILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHM 120
            TGKKK FFAQLAHSAGPT ILYL+EE SDRLEFLPS DSMDQDLLSLYGQYRSTLVDHM
Sbjct: 61  GTGKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHM 120

Query: 121 DVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFD---LGIPPK 162
           DVEKASD +E   SLFHF+LPSSYL FVCSREEFD   LGIPPK
Sbjct: 121 DVEKASDFDELETSLFHFHLPSSYLCFVCSREEFDLFNLGIPPK 162

The following BLAST results are available for this feature:

BLAST of Pay0018218 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38450	7.8e-16	41.73	Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha OX=3197 GN=Y...	[more]

BLAST of Pay0018218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY09	1.2e-86	100.00	Ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold47...	[more]
G3EU29	1.2e-86	100.00	Uncharacterized protein ORF2 OS=Cucumis melo subsp. melo OX=412675 GN=ORF2 PE=4 ...	[more]
A0A3Q9CRZ2	1.2e-86	100.00	Ribosomal protein L10 OS=Cucumis melo var. momordica OX=2034244 GN=rpl10 PE=4 SV...	[more]
G3EIX9	7.0e-84	97.55	Ribosomal protein L10 OS=Cucumis sativus OX=3659 GN=rpl10 PE=4 SV=1	[more]
A0A7D5Y0N6	2.0e-75	90.06	Ribosomal protein L10 OS=Luffa acutangula OX=56866 GN=rpl10 PE=4 SV=1	[more]

BLAST of Pay0018218 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56113.1	2.4e-86	100.00	hypothetical protein [Cucumis melo subsp. melo] >AZP40279.1 ribosomal protein L1...	[more]
YP_004849327.1	1.4e-83	97.55	ribosomal protein L10 [Cucumis sativus] >ADZ10754.1 ribosomal protein L10 [Cucum...	[more]
YP_009913631.1	4.2e-75	90.06	ribosomal protein L10 [Luffa acutangula] >QLJ93021.1 ribosomal protein L10 [Luff...	[more]
QEX95855.1	1.7e-71	85.98	ribosomal protein L10 [Cercis canadensis]	[more]
OVA11595.1	2.8e-71	85.98	hypothetical protein BVC80_967g3 [Macleaya cordata]	[more]

BLAST of Pay0018218 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0018218.1	Pay0018218.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome