Pay0011405 (gene) Melon (Payzawat) v1

Overview
NamePay0011405
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionSWIB domain-containing protein
Locationchr06: 1694998 .. 1697295 (+)
RNA-Seq ExpressionPay0011405
SyntenyPay0011405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGAGTAGTAAAACAAAGCTTCTCAATAATATAGGAAAATATAAAGTTGGTTGATAAATATAAATGTACTTTAGGTGGGTGATCCGAAAAGCATTTAAGGAAGCAGTTCCCTCCCTTAGGGCAAGCAAACGGTCCAAAGGCAGTCCAAATTTCACGTTTGTAGTTTACAACGGAGCCCTTGGTTTTGCGGCGAGTTTTTCCCGATTCATCTCCTCCACTAAACCCTCCGCCGGAAACCGACTGCAAGAACCGAGCGAGTTACAATGTCTTCTGGATTCAACAATGGCTTAAGGGTTTTCAGAGCCTGTAGAACTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCACGAAGCCGAAGACGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATCAAAAAGGGAACGTCTCGACCGTCGGGGATTCTGAAGGTCACCCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCACGCAGATCTGGTCCTACATCAAGCTCCACAACCTTCAGGTTCGTAGCTTATAACCGTTTTGGTTTCTAGGGAATTGGGTGGAAAAATGGACGTGCAAATAGGCTAAAATGCACCTCCAACTTCCAATCCAGGAATTGCATCAACTAGTTAACCTCTAAACTGAAATCTATGGTTTCTCTCCCCGCCGTAATGGGGGTCATTTAGTTTTTCCGATGAGGAAAAGTTTAGTAATCTGAAGGAAAATGGAGTATGGAGGTTTCATCCATAACTGGTGCTCCCAATGCTTATTATTGCTGAGGTCGAGGAACCAGTTTTCTCCATGATCCGGGTAGATGCAAAGCCATCTGAGGAATTATATTTTCGTTCCAAAAAAAGAAAAGTTTACCTCTAAACTGAGATGGAATCTTTTCGGGAAGTACTCGTTACCGTGTTGTTGCTTATCTAAATTGTGCAATGGCCAATTGTGCTTGTACTTAGACTGGTAAATTCCCTGTTGTTCTTTCTTAAACTTTGGGGGATGAAAATCTTTGGAATATCTACACGATGGACTCTTGGAGATATATAGCTGACTTCTGGGCATTGACAATTCCCTCCCTTTTTCGATGAGAATGCTTAACACTTAAAAGGTTGTGATATAGGGATTATCTTATATAGTAGGTTTATTGGTCCTTGCATGGTCATTGATTTGGCTTAGTACCTCAACTCAGCGAAAGTATAGAGACCATAATTGAAAGTATAAAGATCAGAAGGACGGACTCATACTTGAATGTATAGGGACCAAAATGAACCAAAACCAAAAAGTATAAGGCTCAAACTAGTATATAGTAATAGTATTACTCTATAAATGGTTGAAATTGATATTTTACTTAAGAAAGATTTGGTACTGATCCCTGTAATTTATTTGTGAGCTCGACAGTTTAGCCAGAGTTAGCATAACTTGAAGATATTATTCTTTTTGGAATGGAGTTCGTTCATGTAGTTAGTTGTGGATTCCTTCTGTAGGCTTAATTTTTTATCTCTCTAGTTTTGCATTCATTTGTACAATTCTTTCATTCTAAGTTTCTTCCCTATGATTTGTGAAATATTATACGTAAAATTTCTGGGGGAACTTTTTGAGCTGCACGCAATTACTCATAGTTTTCAAAGAAAACACAAACGGCTTAGAGCCAAAGAGCTTTACATTGTTATTTTAGTTGATAATTTGGGAGTTTCTGTGATCCAAGCCATGACATAACGATATATTTCATTGTCGTCGCCTGCAGAATCCTGATAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGGGAAAAGGTTAGTTTCTTAGAGATCGGAAAAATGCTCGCCCGCCATTTTGTAAAGAACTGATGCAGGTGATGAGAGATCAACTTTCACTCCCCACCTTTTCAATCCATTTAGTTAGCAATTGTCTTGTTTAGCTCATATTTTTTTTAGGTAACATTGATGAACTTTCTTCCCGACGGTGCATTTGAAGGTCTTACTCCAATTGTGATGTCTGGTAAGTTTGTTGGGCATTTTGTAAAAAGGATAACCCCAAATTAGATATCTTCCATTTTCTTGACAAGTTGAAGCCTTTTTTTCCCTAATCAGATTGTACATTTTGTTTTGTATAGTGCTTCCTCTTATTTTATTTCACCTCCAAATCATATTGATGGATGAAATACAAGATGTCAATGAATTATTTTT

mRNA sequence

GTAGAGTAGTAAAACAAAGCTTCTCAATAATATAGGAAAATATAAAGTTGGTTGATAAATATAAATGTACTTTAGGTGGGTGATCCGAAAAGCATTTAAGGAAGCAGTTCCCTCCCTTAGGGCAAGCAAACGGTCCAAAGGCAGTCCAAATTTCACGTTTGTAGTTTACAACGGAGCCCTTGGTTTTGCGGCGAGTTTTTCCCGATTCATCTCCTCCACTAAACCCTCCGCCGGAAACCGACTGCAAGAACCGAGCGAGTTACAATGTCTTCTGGATTCAACAATGGCTTAAGGGTTTTCAGAGCCTGTAGAACTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCACGAAGCCGAAGACGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATCAAAAAGGGAACGTCTCGACCGTCGGGGATTCTGAAGGTCACCCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCACGCAGATCTGGTCCTACATCAAGCTCCACAACCTTCAGAATCCTGATAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGGGAAAAGGTTAGTTTCTTAGAGATCGGAAAAATGCTCGCCCGCCATTTTGTAAAGAACTGATGCAGGTAACATTGATGAACTTTCTTCCCGACGGTGCATTTGAAGGTCTTACTCCAATTGTGATGTCTGGTAAGTTTGTTGGGCATTTTGTAAAAAGGATAACCCCAAATTAGATATCTTCCATTTTCTTGACAAGTTGAAGCCTTTTTTTCCCTAATCAGATTGTACATTTTGTTTTGTATAGTGCTTCCTCTTATTTTATTTCACCTCCAAATCATATTGATGGATGAAATACAAGATGTCAATGAATTATTTTT

Coding sequence (CDS)

ATGTCTTCTGGATTCAACAATGGCTTAAGGGTTTTCAGAGCCTGTAGAACTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCACGAAGCCGAAGACGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATCAAAAAGGGAACGTCTCGACCGTCGGGGATTCTGAAGGTCACCCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCACGCAGATCTGGTCCTACATCAAGCTCCACAACCTTCAGAATCCTGATAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGGGAAAAGGTTAGTTTCTTAGAGATCGGAAAAATGCTCGCCCGCCATTTTGTAAAGAACTGA

Protein sequence

MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGVAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN
Homology
BLAST of Pay0011405 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0

Query: 69  KKGT--SRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYC 128
           KKGT    P    KVT +S +L++ LG  E +RT+ V ++W+YIK HNLQNP+NK+EI C
Sbjct: 110 KKGTVSKSPISTRKVT-LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILC 169

Query: 129 DDKLKAIFEGREKVSFLEIGKMLARHFVK 156
           D+KL+ I    +  +  E+ K+LA H  +
Sbjct: 170 DEKLELIL--GKSTNMFEMHKILASHMTE 195

BLAST of Pay0011405 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 67  KIKKGTSRPSGILKVTQV--SPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREI 126
           K KK  S  S  + V +V  S  L  FLG  E  RT  V  IW YIK H+LQNP ++REI
Sbjct: 107 KKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREI 166

Query: 127 YCDDKLKAIFEGREKVSFLEIGKMLARH 153
            CD+K++ IF   +K++   + K+L +H
Sbjct: 167 LCDEKMEPIF--GKKMTMFSMNKLLTKH 192

BLAST of Pay0011405 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 83  QVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREKVSF 142
           ++S A +N LG+ E +R D V+ +W YIK H LQ+ + KR I CD  L+ +FE  +++ F
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYF 266

Query: 143 LEIGKMLAR 152
             I +++ R
Sbjct: 267 PRIPELMNR 274

BLAST of Pay0011405 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 0

Query: 20  APS-KSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGVAATPEPKIKKGTSRPSGI 79
           APS K S    A A K+K     +    + K P               K K+     +  
Sbjct: 57  APSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNP 116

Query: 80  L-KVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFE 136
           L K  ++SP L+ FLG+ + SR   V ++W YIK H+LQ+P++KR I CDDKLK++FE
Sbjct: 117 LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

BLAST of Pay0011405 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 23/70 (32.86%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 83  QVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREKVSF 142
           ++S AL + LG+   +R   +  IW Y+K   LQNP++     CD  L+ +F G EK+ F
Sbjct: 320 KLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKF 379

Query: 143 LEIGKMLARH 153
             + + ++ H
Sbjct: 380 TMVSQKISHH 388

BLAST of Pay0011405 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60
           MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN
Sbjct: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

BLAST of Pay0011405 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.1e-69
Identity = 146/158 (92.41%), Postives = 149/158 (94.30%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTK--PKTKLPKVKTPPSSVAAA 60
           MSSGFNNG+RVFRACR LLAPSKSSATVPATAPKSKTT+K  PK KLPKVKTPPSSV AA
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSV-AA 60

Query: 61  GVAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNP 120
           GVAATPEPKIKK  SRPSGILKVTQVSPALSNFLGVSEASR+DAVTQIWSYIKLHNLQNP
Sbjct: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120

Query: 121 DNKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           DNKREIYCDDKLKAIFEGREKV FLEIGK LARHFVKN
Sbjct: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

BLAST of Pay0011405 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.5e-54
Identity = 120/156 (76.92%), Postives = 131/156 (83.97%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60
           MSSGF+NG+RVFR CR LLAPSKSSATVP  A KS+TT+K  T+ PK KTPP S  AA  
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTE-PKEKTPPRSDVAA-- 60

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           AA P+PK+K+  +R +G LKV QVSPAL NFLGVSEASRTDAV QIWSYIKLHNLQNP N
Sbjct: 61  AAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPAN 120

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           KREIYCDDKLKAIFEGREKV FLEIGK+L RHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

BLAST of Pay0011405 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.6e-53
Identity = 122/157 (77.71%), Postives = 132/157 (84.08%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVP-ATAPKSKTTTKPKTKLPKVKTPPSSVAAAG 60
           MSSG +NG+RVFR CR LLAPSKSSA+VP A A KSK T KPK++  K KT PSS  AA 
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSE-SKEKTAPSSDTAA- 60

Query: 61  VAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPD 120
            AA P+PKIK+  +RP+GILKV QVSPAL NFLGV EASRTDAV QIWSYIKLHNLQNP 
Sbjct: 61  -AAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPA 120

Query: 121 NKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           NKREIYCDDKLKAIFEGREKV FLEIGK+LARHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

BLAST of Pay0011405 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.6e-53
Identity = 118/156 (75.64%), Postives = 130/156 (83.33%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60
           MSSGF+NG+RVFR C +LLAP KSSATVP TA KSKT +K   + PK KTPP S  AA  
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAE-PKEKTPPRSDVAA-- 60

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           AA P+PK ++  +RP+G+LKV QVSPAL NFLGVSEASRTDAV QIWSYIKLHNLQNP N
Sbjct: 61  AAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSN 120

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           KREIYCDDKLKAIFEGREKV FLEIGK+L RHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

BLAST of Pay0011405 vs. NCBI nr
Match: XP_008438197.1 (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_008438198.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-77
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60
           MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN
Sbjct: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

BLAST of Pay0011405 vs. NCBI nr
Match: XP_004133931.1 (upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypothetical protein Csa_011434 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68
Identity = 146/158 (92.41%), Postives = 149/158 (94.30%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTK--PKTKLPKVKTPPSSVAAA 60
           MSSGFNNG+RVFRACR LLAPSKSSATVPATAPKSKTT+K  PK KLPKVKTPPSSV AA
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSV-AA 60

Query: 61  GVAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNP 120
           GVAATPEPKIKK  SRPSGILKVTQVSPALSNFLGVSEASR+DAVTQIWSYIKLHNLQNP
Sbjct: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120

Query: 121 DNKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           DNKREIYCDDKLKAIFEGREKV FLEIGK LARHFVKN
Sbjct: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

BLAST of Pay0011405 vs. NCBI nr
Match: XP_038877222.1 (upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 upstream activation factor subunit UAF30 [Benincasa hispida])

HSP 1 Score: 234.6 bits (597), Expect = 5.9e-58
Identity = 128/156 (82.05%), Postives = 138/156 (88.46%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60
           MSSGF+NG+RVFRACR LLAPSKSSATV ATA KS TT+KPK K  KVKTPP+S   A V
Sbjct: 1   MSSGFSNGIRVFRACRALLAPSKSSATVAATAAKSNTTSKPKPK-SKVKTPPTS-DTADV 60

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           +ATP+PKIK+  +RP+GILKVTQVSPALSNFLGVSEASR DAV QIWSYIKLHNLQNP N
Sbjct: 61  SATPKPKIKREITRPTGILKVTQVSPALSNFLGVSEASRIDAVKQIWSYIKLHNLQNPAN 120

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           KREIYCDDKLKAIFEGREKV FLEIGK+LA HFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVGFLEIGKLLAHHFVKN 154

BLAST of Pay0011405 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima])

HSP 1 Score: 221.5 bits (563), Expect = 5.2e-54
Identity = 120/156 (76.92%), Postives = 131/156 (83.97%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60
           MSSGF+NG+RVFR CR LLAPSKSSATVP  A KS+TT+K  T+ PK KTPP S  AA  
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTE-PKEKTPPRSDVAA-- 60

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           AA P+PK+K+  +R +G LKV QVSPAL NFLGVSEASRTDAV QIWSYIKLHNLQNP N
Sbjct: 61  AAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPAN 120

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           KREIYCDDKLKAIFEGREKV FLEIGK+L RHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

BLAST of Pay0011405 vs. NCBI nr
Match: XP_022924718.1 (upstream activation factor subunit spp27-like [Cucurbita moschata])

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-53
Identity = 118/156 (75.64%), Postives = 130/156 (83.33%), Query Frame = 0

Query: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60
           MSSGF+NG+RVFR C +LLAP KSSATVP TA KSKT +K   + PK KTPP S  AA  
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAE-PKEKTPPRSDVAA-- 60

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           AA P+PK ++  +RP+G+LKV QVSPAL NFLGVSEASRTDAV QIWSYIKLHNLQNP N
Sbjct: 61  AAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSN 120

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           KREIYCDDKLKAIFEGREKV FLEIGK+L RHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

BLAST of Pay0011405 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-29
Identity = 74/151 (49.01%), Postives = 95/151 (62.91%), Query Frame = 0

Query: 11  VFRACRTLLAP-SKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGVAATPEPKIK 70
           VFR  R+LLAP S++++++ +     K   KPK K                 A P+PK K
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAK-----------------AKPKPKAK 67

Query: 71  -----KGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREI 130
                K T R +GI KVT VSP L+ FLG  E SRTDA+  IW+YIK H+LQNP +KREI
Sbjct: 68  SDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREI 127

Query: 131 YCDDKLKAIFEGREKVSFLEIGKMLARHFVK 156
           +CD+ LK IFEG++KV FLEI K+L+ HFVK
Sbjct: 128 FCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141

BLAST of Pay0011405 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-23
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 76  SGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFE 135
           +GILKV  VS  L+NF+G +E SRT AV +IW YIKL+NLQNP NKREI CD++LK IF 
Sbjct: 28  TGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFS 87

Query: 136 GREKVSFLEIGKMLARHFVKN 157
           G++ V FLEI K+L++HF K+
Sbjct: 88  GKDTVGFLEISKLLSQHFPKS 108

BLAST of Pay0011405 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-20
Identity = 57/135 (42.22%), Postives = 82/135 (60.74%), Query Frame = 0

Query: 20  APSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGVAATPEPKIKKGTSRPSGIL 79
           AP +SS   P++    + +    T L  V+   S+ AA+      +P     T  P GI+
Sbjct: 18  APLRSSMLSPSSL---RLSPNHPTNLRMVRAVTSAAAASS-----DPTTTTKTREPRGIM 77

Query: 80  KVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREK 139
           K   VS A+ + +GV E  RT A+ +IW+YIK H+LQ+P NKR+I CD+KLK IFEG+E+
Sbjct: 78  KPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKER 137

Query: 140 VSFLEIGKMLARHFV 155
           V FLEI K++  HF+
Sbjct: 138 VGFLEIAKLIGPHFL 144

BLAST of Pay0011405 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-20
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0

Query: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120
           AAT E     G  +  GI K   VS  L++F G  E +R  A+ ++W Y+KLHNLQNP N
Sbjct: 18  AATVEAVTVAGEGK--GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPAN 77

Query: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 157
           K+EI+CDDKLK IF+G++KV   EI K+L+ HF K+
Sbjct: 78  KKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

BLAST of Pay0011405 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-18
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 0

Query: 17  TLLAPSKSSATVPATAPKS-KTTTKPKTKLPKVKTPPSSVAAAGVAATPEPKIKKGTSRP 76
           T L    +S   P+T   S +  + P  KL  V+   S+  ++   AT           P
Sbjct: 10  TFLCIKTTSFRNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTAT-------NKRVP 69

Query: 77  SGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFE 136
            GI+K   VSP + + + + E +RT A+ +IW+YIK H+LQ+P NKREI CD+KLK IFE
Sbjct: 70  RGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFE 129

Query: 137 GREKVSFLEIGKMLARHFV 155
           GR++V FLEI K++  HF+
Sbjct: 130 GRDRVGFLEIAKLIGPHFL 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q087471.7e-1244.94Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
Q050242.5e-1143.18Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ... [more]
Q9P7S39.9e-0839.13SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ... [more]
O745039.9e-0836.44Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
Q9FMT41.6e-0532.86SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g1... [more]
Match NameE-valueIdentityDescription
A0A1S3AVG61.6e-77100.00upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0L3V06.1e-6992.41SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 S... [more]
A0A6J1IWB12.5e-5476.92protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1[more]
A0A6J1D0R83.6e-5377.71upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1EDA23.6e-5375.64upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L... [more]
Match NameE-valueIdentityDescription
XP_008438197.13.3e-77100.00PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_0084... [more]
XP_004133931.11.3e-6892.41upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypotheti... [more]
XP_038877222.15.9e-5882.05upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 ups... [more]
XP_022980440.15.2e-5476.92protein TRI1-like [Cucurbita maxima][more]
XP_022924718.17.5e-5375.64upstream activation factor subunit spp27-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G03590.11.6e-2949.01SWIB/MDM2 domain superfamily protein [more]
AT2G35605.11.7e-2361.73SWIB/MDM2 domain superfamily protein [more]
AT4G34290.12.3e-2042.22SWIB/MDM2 domain superfamily protein [more]
AT1G31760.13.1e-2050.00SWIB/MDM2 domain superfamily protein [more]
AT2G14880.12.9e-1840.29SWIB/MDM2 domain superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 78..155
e-value: 8.4E-27
score: 105.0
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 71..156
e-value: 3.7E-28
score: 99.4
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 74..155
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 83..153
e-value: 1.1E-28
score: 98.9
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 77..155
score: 23.737585
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..74
NoneNo IPR availablePANTHERPTHR13844:SF67PROTEIN TRI1coord: 1..155
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 1..155
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 83..153
e-value: 1.31382E-33
score: 111.096

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0011405.1Pay0011405.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus