Pay0009290 (gene) Melon (Payzawat) v1

Overview
NamePay0009290
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionSmall nuclear ribonucleoprotein E
Locationchr01: 14047461 .. 14051074 (+)
RNA-Seq ExpressionPay0009290
SyntenyPay0009290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAGAATTCACATCTAAACCAAACCGTATAAGCCTTCTTCGTTGCCCTAATTGAAGTTCCATTCCCGTAGCTGGCGACTGTGAGGGCGTGAGCTGCTGCGACTTCCGAGTGAACTCAGACAGAGTTAGGTCTTCCAATTTCCTTTCTTGAGATATCTATTTGCTTGAATCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAGTACTTTCTCATCTCAACTTATTTTGCTTCATTTCATCCTTCCTTTCCCCTTTTCTCTTACGTGTTTCACTTATGCATTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATTGGATGTTGGTGCACCTTCAGAACTTGATTTTCAGGTTTCTTCAAAGTGTAAGTTCCTTTTCATGATCATTTACTTTATTTTCCATTTTGGGTATCGACGATTTGTTGTTGTTGTTGTTGTTTTTTTTTTCTTAAATAGTGAAATTGGTGTGTTCTTCCTCTGATGTTACTTACTTTTGTCTTCACGTTGGAAATTTGTGCAGAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATTATTGTAAGTTCTTTAGACTTGTGGGCTTTTTCTTCGAGAAAATCATCGTGCAAATATCTAGTTTATCTATTCTTAATGTACATTTGAATGTTAAAAAAGCTTACTAGGATTTTAAGTTTCCAAATATTGATTGTACGTCTGGGGTTTTAAGTTATTTTTTTCGAACTGAGGTGCATAGTTATGCTTTTACTGTTTTCCCACTCAAAAGAGATCATTCCAACATGGATGCAAAAGGAAGATAGTTTAATCCTGTTTGGTAATCATTTGATTTTTTGTTTTTTGGTTTTTGAAAATTAAACTTATAAACCCTACTTTGGTCGTTGGAAATTCTGGGGCATTCTCTGCTCATTTGACCTTCCATAAACTTACCAGTTACCTGAACTAGTCATAAGCTTAAAACCCTGCAGATGAAGTTGATATGATTATATGAAAGTTTTATATTCCAAAGAAGATAAAAGTCTTCCTCTGGAGTCTCACGCATAATAATCTAAATGCTTACAGAATCTTAGAAAGCATTGCTTGTCTCCATCGGTGTGCTTGCTCTGCCTCAAAGGATAGGAATCCAGTAACCACTTATTCCTATTTTTAGCTTCGCTAGAAGGGGTTGGTAGCAACTTTTTAAACTTTTGGTCTAAAACTTTGTATTCTTGAGGAGTAAGTAGTTGGTTTTTAGATGCTCTTTAAGGGTGGCCCTTTGAATGTAAAGCTGAAATCCTATGGGGTTGTACAACTCAAGTTCTTTTATGAGAGCTGTGGAAAGAATTATTTGAACAACGTGTGAAGATAAGTCCTGCTCCTTTGTTGATTTTTGTAACCTTGTACAACTTAATTTTTCTTTGTGGACTCATATGTGGATCCTCGAAGATGTGACTTTATTGTTATTCTTTTTTTTTTTTTTTTGTGATTAATACCTAGTTCTGTATCTTATAGAAAAAGCCAAGATATGAGAGCACATAAATATCTTCTTCCCTTAGTTGATTTGTTTTGGTTACACAGCCCAGATCAACTTGCATTGCAGAAAAAGAGAATCAATTTGTTTGTTTCCTTAATATAGTTGTCCAACATCTAGGTTGGTGGCTATCATTTTTGAAGCCATGGATGCTCAAGCTATTTTTGGAGAAATATTTGGTTCATGAAGGTTAGTAGTAGTTGTACTGCAAGGGATAAAGGATTTGTGTGTCTAGGATCCTGACCTTCTGGACGGCGTCTCCTATAGCTCATTTTTCCATTTGTTGCATCCCCCGCCGTTCAGTGAGTTTATGTTCTTTAACATCTGAAAATTTAAGATTCCTAAGAAAGTAAGGTTCTTTATTTGGCAAGTTGTATATGAATGTGTGAACACATTGGACCGACGCTTGAGCGCGATTCCTTTGCTAGTGGGCCATTTTGCTATATTCTTTGTTGGAAGGCAGAGGAAGATTTGAATCTCATTCTTTGGAGGTGTGAGTTTGTGTTTGCAGTTTGGGACTTGTTTTTCTAGACTTCTGTCTTGATGCTTGCCTGTCCTAGGGGCACTAGAGATATGTTCAGGAAGTTCTTCCACTAATTTAATGCCTCAAGATCTCTTCCATTATTCCACGCCTTTTTGGTGTTCCTTTCCAGGAATGAAATACCATAATCTTTGGTAAAATCTCTTCTAATATTGACATCATCTACAGTACCAAAACATTATTATTGCTGTTATTATTTTGGTAAGAGATTGTGCTTTCATGGAGAGAAATGAAAGAATATACGAGGACACACATAAAAAAAAACCCTAACAAAAAAGGGACTCTAATTGAAAAGAACAAGATTAAACTCATAATTATGAAAATGACTTACGACTTGGTCGTTCTGATGCCCATGGGCTATAATTGTTAGTTGAGGCACCAATTGGAAGTTGGTGTAGTGGATTATTGTAGACCACTCCATGTTTGGTGCACCAACTATAATAATGGTGTGGACAACTATATGCAACCTGTAATTAACTACAGTAAATACTATTTTAAAACCCTTTTCGCTACTATATTTTACTATTTTGTTACATTATTTGATATTTTTCACTCATATGCTCTTTTCTTCTTTGGTACAGTGTTTACTATTTCCTACCTGAACAAAAATATTCTACACCCCAAACAAACTACTATAACTCAAAGTAGTCAGAACCCCAAACGCCAACTATTATAACTCCCTAACTATTGATAACCACCAACTATAATGACCAACTTAGGACTCTAAATGCTCCCCAAGTTTTTTTAATTTGAGGGTTTCTATAAGTTTGTGATGTGTCTTCTGAACATTATTAATTTTCTGGTGACGACTTCTGAGTTTTACTTCCCAGGGATTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGTTTGTCTCTTCATCATTTCCTCTCGAAGTCAACACTTAAAATAGTTTAAGGGCAGATTAAAAACTCGTCTTATCTTTAACTTTTTCAGGGAGGATATTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGTAAGTCCTTTGGAAGCTCTCTCTTTCAAAATTCATCAATACTGATGCATAATTGCTCTTTCTAAAAAAATTCATGAATTGTAAACGAATGCAAAATTGCAGGGGCAAGTGATGACCATTTTTGAACCAATACAAGAGATAGTGAAGTGTAGCCCTTTTCAGTGGTGGAACTTGGAAGTCTTGTGTTGATCATAACATAGATTGTTATTTTTACTGTCAATTGGTTGACTGTTTTTGTACTTGCCTTAAAAAGAAATTAGAATGTCAGCTTATATGAGAGATAGTCATGGCACTCAACTCATCCAGCACTAATGTTGCTTAGATCATTGTATTTATTTTGCATATATCCTCAACCTTATGATACATGCTAGATATTTGCTGAGCTATGGTGGATTAATTGGACAACAAGAAGAAATTGGCTATTTTTATTTTATTTTATTTTAATTTTTAATTTTAAATCTTTATAAGC

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAGAATTCACATCTAAACCAAACCGTATAAGCCTTCTTCGTTGCCCTAATTGAAGTTCCATTCCCGTAGCTGGCGACTGTGAGGGCGTGAGCTGCTGCGACTTCCGAGTGAACTCAGACAGAGTTAGGTCTTCCAATTTCCTTTCTTGAGATATCTATTTGCTTGAATCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATTATTGGATTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGGAGGATATTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGGGCAAGTGATGACCATTTTTGAACCAATACAAGAGATAGTGAAGTGTAGCCCTTTTCAGTGGTGGAACTTGGAAGTCTTGTGTTGATCATAACATAGATTGTTATTTTTACTGTCAATTGGTTGACTGTTTTTGTACTTGCCTTAAAAAGAAATTAGAATGTCAGCTTATATGAGAGATAGTCATGGCACTCAACTCATCCAGCACTAATGTTGCTTAGATCATTGTATTTATTTTGCATATATCCTCAACCTTATGATACATGCTAGATATTTGCTGAGCTATGGTGGATTAATTGGACAACAAGAAGAAATTGGCTATTTTTATTTTATTTTATTTTAATTTTTAATTTTAAATCTTTATAAGC

Coding sequence (CDS)

ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATTATTGGATTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGGAGGATATTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGGGCAAGTGA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK
Homology
[Close]
BLAST of Pay0009290 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Pay0009290 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Pay0009290 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Pay0009290 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Pay0009290 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Pay0009290 vs. ExPASy TrEMBL
Match: A0A0A0K3R1 (Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_7G206940 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.8e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. ExPASy TrEMBL
Match: A0A1S3BIS5 (Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103490154 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.8e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. ExPASy TrEMBL
Match: A0A6J1DT21 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Pay0009290 vs. ExPASy TrEMBL
Match: A0A1U8JTM2 (Small nuclear ribonucleoprotein E OS=Gossypium hirsutum OX=3635 GN=LOC107909182 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRK+LGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKSLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. ExPASy TrEMBL
Match: A0A5D2FR92 (Small nuclear ribonucleoprotein E OS=Gossypium darwinii OX=34276 GN=ES288_A08G279400v1 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRK+LGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKSLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. NCBI nr
Match: XP_004139778.1 (small nuclear ribonucleoprotein E [Cucumis sativus] >XP_008447758.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_038896948.1 small nuclear ribonucleoprotein E-like [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 2.0e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. NCBI nr
Match: XP_039006230.1 (small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039014446.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039018264.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039036978.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039036979.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          N+KKKSRKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. NCBI nr
Match: XP_022156313.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 small nuclear ribonucleoprotein E-like [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Pay0009290 vs. NCBI nr
Match: XP_002531748.2 (small nuclear ribonucleoprotein E [Ricinus communis])

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKK+RKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKTRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. NCBI nr
Match: XP_012477072.1 (PREDICTED: small nuclear ribonucleoprotein E-like [Gossypium raimondii] >XP_016692123.1 small nuclear ribonucleoprotein E [Gossypium hirsutum] >XP_016714938.1 small nuclear ribonucleoprotein E [Gossypium hirsutum] >XP_017624010.1 PREDICTED: small nuclear ribonucleoprotein E-like [Gossypium arboreum] >XP_023910548.1 small nuclear ribonucleoprotein E-like [Quercus suber] >XP_023910556.1 small nuclear ribonucleoprotein E-like [Quercus suber] >XP_030955059.1 small nuclear ribonucleoprotein E-like [Quercus lobata] >KAB2019199.1 hypothetical protein ES319_D08G281600v1 [Gossypium barbadense] >KAF3957351.1 hypothetical protein CMV_017624 [Castanea mollissima] >TYG59331.1 hypothetical protein ES288_D08G293700v1 [Gossypium darwinii] >TYH60443.1 hypothetical protein ES332_D08G292600v1 [Gossypium tomentosum] >TYI71292.1 hypothetical protein E1A91_D08G284400v1 [Gossypium mustelinum])

HSP 1 Score: 170.6 bits (431), Expect = 5.9e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRK+LGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKSLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Pay0009290 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-40
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          ++KKK+RK LGRILLKGDNITLMMN+GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]
BLAST of Pay0009290 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          ++KK +RK LGRILLKGDNITLMMN+GK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Pay0009290 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-30
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLG 72
          ++KK +RK LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]
BLAST of Pay0009290 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.1 bits (113), Expect = 4.1e-06
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 72
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 73 GRILLKGDNITLMMNSG 88
           +ILL G+NI +++  G
Sbjct: 70 DQILLNGNNIAILVPGG 82

[Close]
BLAST of Pay0009290 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 44.3 bits (103), Expect = 6.0e-05
Identity = 25/82 (30.49%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNVKKK 76
          + +F+  + R+ I    Q   ++ G+ + FD +MNLVL D EE           +N +++
Sbjct: 9  MLQFINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEERE 68

Query: 77 SRKTLGRILLKGDNITLMMNSG 88
           R+TLG +LL+G+ +  M   G
Sbjct: 69 DRRTLGLVLLRGEEVISMTVEG 86

The following BLAST results are available for this feature:
BLAST of Pay0009290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FUI22.2e-2872.84Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
P623032.2e-2872.84Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1[more]
P623042.2e-2872.84Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
P623052.2e-2872.84Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1[more]
A1XQR92.2e-2872.84Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1[more]
BLAST of Pay0009290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3R19.8e-40100.00Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_7G206940 PE=... [more]
A0A1S3BIS59.8e-40100.00Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103490154 PE=3 S... [more]
A0A6J1DT212.2e-3998.86Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239... [more]
A0A1U8JTM22.9e-3998.86Small nuclear ribonucleoprotein E OS=Gossypium hirsutum OX=3635 GN=LOC107909182 ... [more]
A0A5D2FR922.9e-3998.86Small nuclear ribonucleoprotein E OS=Gossypium darwinii OX=34276 GN=ES288_A08G27... [more]
BLAST of Pay0009290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139778.12.0e-39100.00small nuclear ribonucleoprotein E [Cucumis sativus] >XP_008447758.1 PREDICTED: s... [more]
XP_039006230.12.7e-3998.86small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039014446.1 small... [more]
XP_022156313.14.5e-3998.86small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 sma... [more]
XP_002531748.24.5e-3998.86small nuclear ribonucleoprotein E [Ricinus communis][more]
XP_012477072.15.9e-3998.86PREDICTED: small nuclear ribonucleoprotein E-like [Gossypium raimondii] >XP_0166... [more]
BLAST of Pay0009290 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30330.12.6e-4092.05Small nuclear ribonucleoprotein family protein [more]
AT2G18740.19.7e-4090.91Small nuclear ribonucleoprotein family protein [more]
AT2G18740.21.8e-3090.14Small nuclear ribonucleoprotein family protein [more]
AT5G48870.14.1e-0636.36Small nuclear ribonucleoprotein family protein [more]
AT4G20440.16.0e-0530.49small nuclear ribonucleoprotein associated protein B [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 19..85
e-value: 1.7E-17
score: 74.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 20..83
e-value: 7.7E-18
score: 64.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..86
e-value: 4.7E-42
score: 143.7
NoneNo IPR availablePANTHERPTHR11193:SF10SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..87
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..87
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 7..85
e-value: 3.54116E-52
score: 155.79
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 12..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0009290.1Pay0009290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding