Pay0008139 (gene) Melon (Payzawat) v1

Overview
NamePay0008139
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptiontRNA pseudouridine(55) synthase
Locationchr02: 8517918 .. 8522681 (+)
RNA-Seq ExpressionPay0008139
SyntenyPay0008139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCAAGTATATCCATCCTTGTTCACTGGAAAATGATGGTGTTACGTTTCAAGTACACGAAATGCTTCACATTGTAGTTTTTAGGCTCTATAGGAAAAGAATGTTGAGAAAGGTGTTATGATTTTGTTGTTGTCTTGACTTTGATCTAGTAACCATAGAGTGATTGTTTTCTATTGGCTTTGCTTGTTGTTGGGATTGATTATTATGCATCTATATATTTGTTGTACGGCAAGGAAGATCAATGAACAATTGTTCATTGATATTAAGTAAACTTTCAAGTAAAACTTTAGAGATACTCGTCGGGTGAGATGTTCTAAACTTTTGAGTTTGTTACTTTGAAGTTCCTTTCCTAGTGGAGGTTGTATTTGAGATTGTTTCTCCGAGATGATCTTTGGTTGATCTCTTTCATGATGTCTTTGAGATGGATTTACTTGTAAATTTGTATTTAATAGATCTTGATTTTTGCTTTGATTACCTTGTTTGTAGTGTGGGACTTTGTTTTCTTTTTATTTCTTGAGTAGTTGATACATCTTCTTAGTTAATGGGTGTTGGATCAAATTGGATGCCTTTAGGTTGAATTATTTCTTCATTTATCTCTTCCACGATTGGCATTTTACATTCGTTGTCATAGCAATGATTATTTTTCCTGTGAGTTGCAACACTTTTAGTTTCTTGTGGTTTTATCTCTAATCCATTTGTAGGATTATATCAATTTGCTGCATTTAAAAAACTTGTTATATCTAGAGATTCACAACTCAAGGGATGGTTAGTGGATTTGTTATCAAAAGTAAGGTAGTTTTCATCAAATATAACATGTCTAGATATGTAAACTTTATTTGTCTTTGGATTTAAATACCTAGCTATATCCCTTGTAAGACATCTTTATTAGTGAGCTATCGTAGACCTTTTTTTCCCGTGTAGTGTTGTTTAAGTTTGTGAATTTTAATGTGTAGGAGTTAGGTCCAAACAAAGCTTACTCAGTATTAGTTTGACTCGTCTATTTTTTTCTGTTTGTGGTTGTTTGATGTTTATAATGAACATATTAGTAGTTTATTTTGTCTTTGGTTGTTTGATGTTTGTAAAAATCCTTTCGGTCGATGTTGATTTTGTCTTTGATTGTTTGATGTTTGTGAAACCTAGAGTTTTCGAGGTAGTGAAAAGAGAATGGGAGAAGCATTTGTTGAGGTAGTGGCCTTTTGCTTTGGTGACTGGTTGTTCTATTATACAACTGTTCATTTTGCAAGAAAAATTAACAGTTTCATGGGTATCTGCAAGAGATTCTAGGCAACAATATTCTTCTCTTTTGTTGAGGTGATAGTTACAAGTTCCATGCTGCTGGTAGAGAGGATGTTGATGTAATATTCTTTCCTTATTTACAATTAGGAAGCTCTCTACTGTTTGTAATATTAAATTTTCTTGCTAGGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACGCATGTCTTCTCCCATCTGAGGTGATAATAAATGAAATACAGTCAGAGATAAATAGCTCGGAGAGTAAATTGGTAAGTTGTTCATATTGTACTGCTTCTTCCATAGATTAAAATTACTGCAAACTTCATATGAATCACATTATTATTTCAGGTTGGCGTAAGAAATCTGAAAGTTGTAAGTAGAGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAGTAGGTTTTCTCTATGAGGAATCTTTTTGTCAATTACAAATACAAGGTTCTATTTAATTCTGCATCTGTGACTCTTTAAATCATGCAGAAGCAATATGCTTCACTTGTGTGGACATCTCGCCCACTCGAGGATGATGATTTTTTATCAATATCATCACTCCAGAACTTGGTGAGAAGTTCAACAAGCTTGATGCTTTGATTTCATAGCTTATTATTGATGCGTTACATTTTAGAACCATGCTTGTGAAATTATTTTTTCTTGTGCACAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCACTGAAGTCCATTAGAACGTGTAAAGAACATCCACTAGTTAGAGCCATTTTCCAATTGTACAGTGATGCTACAAAGTACAATCCACCCATGCTTCCACTTAGGGTCACTGACGATGTTCTCTTATTTCATTTTAGGATGAAGATTGAGAGGGTTGCTGAAAGTTCTCAGTATTATCTCCTACATTTGTGTACCTAGGTACAGTCTTCTAAAATTGAATTAAGGCCACTTTTTAGGAGAATTTTGGTAACATAATTATATCATGAAAATCCAGCTGTATTGTCTTTGAGTGGCTTTGTTTAAATCGTTATTTTTGTCTAGGTTCGTTTTTAGGTTGTCTTTATATATTTATGTTGCTTGAGTATGGTCTTTGTTTTAGTTTTAGTCTGTATTTTCTCTTATTTTCTTTTACTCTTAGTATAATACTCATGTATTTTGAGCTTTATATCACATGAGCTTACTGGGTTTTGTTTTTCTGTTCTACTTCTCTGTTACTCACCACTTCCGTTACATCATTTTACATTGTCGCTATGTCTACTAAATCTAAGTATGTTTTTCTACGGGGATGGGTTTTTTTCTTTTTCTAGTTTTTAAGTGATCGATCTGTTCTGCTAAGTGTAATTTTAATTCCAATTTCCAATTTTCTTGGATCTTTTGTTTTGTTAATGACTGTTGCTTTGTTTATTTAGTGTTATTTTATAAACTTGGAGTTTCTGATGCAGATTAAATGGATATGTCTAATAGCATTTTAAGTGATTATACTACTTTAACTTCTATTTCTTTTGCCTCTGCCATTGATCGTTAGTATATTTTGCGGTAATCTTTATTCTTTCCTAAGTTAAGCTTGGTGTAGGAGGGTCCAATATGGGAGCGGCTACAATACTTTACTTCTTTGTGCTTCTTTTATGTTTACATGAAAATCTAAAGAAGCATGAATATATTCATTACCTATGCATTTCTTTTGCATCTGGTCATGCGATTCTGTTTTGGTATTCGATTAAGTTGAAGAATTGTGATTGATCTAGTTAATTTTTATTTTTTAGATAGTTGAGTTTTGATATAATATTGGTTGGTTGAATTCAAATAGAAAGTGTAATTCAAAAACACTATACGTGTTGCATTGAACACTATACATGTAATTCAAATAGAAAGTTGTCGTCCGCTAGTATGTTATTAGAAAGGTGTGCCACTTGTTTTTCTTTCTATTTCCTAGTGCAGCTAGCCAATCTTGTTATCAATATGTGATACCAATCCTTTGAAGTGTTTCCTCAGAGGGGGCTTGAATGAAAGTGTGTGGAGCAATATAAGTTGTTTTGAGATTCAATACTTCTCTTACGCACTTTTCATTCGTTTCAAGGGTTAAAGTGTTACTCACACACTTTTTGAAAACTTTTGGTTGGTTGAGAATCAAAGTGAGTATAGGATCTTCCTGGGATTGTTACGAGACTCGAAGTGACATTTAAACATTTTTTTTGTTGTTTCAAGTGTTCAAGTGTTGCTTTGAAACTTTTTAGAAACTTTTTACGTTGGTTTTAAGAGCTTTATATTGATACTGTCATCACTGCTTTATATTCTAAGTGGTATCACTACTTTATATTCTAAGTGGTTTGATCATGCTGTGGTTGCCTAATGTGTTGGTACTTTAAATAGCTAGGTTGTTAGATGGATTTGGGATAGGTCTTGTTGTCACTCTTGTTCATGTTTATATTTCAGAGACTGCCACATCAGAAATAAGAGGCTTCAGGCCAAAAAGGTTCCCCAGAGACTCCGTGACATAAAGGATGTTTCAGGTTCATATTTTATTCTTTTTTTAATTTTAGTTCTGATTTTCTATGGTCTTTTAGTTGTGCGCCTTCTAATAGTGACAATGAGATTGATGCAATCAATGATAGATTTTTCCATAATTATCTTAATCTTTAGCGTTTTAATTTGTCTTCGTTTTTACTCTGGTTATGTGATTCTAGTTTGGTATTCGATTGAGTTAAAGAATTGGGATTGATATAGTTTATTTTGTTCTTTAGATAGTTTACTTTTGATCCAATATTGATTGGTTGAATTCAAATAGAAAGTGTGTAATCCAAAAACACTATACGTGTTGCATAGAACACTAACACACAACAAATTCAATTTATTTTAGTGCAATTGATTATCAACATACTGGCAATTAATATTGAAACCTTAGAGTTTCTTGTTGTTTAGGATACTAGTCAAGTTATCCATGGATCAGATTGTTTGTTGCTTGTTCTGAATTCTGACCTAACGTTATGATTTTGTTTTTGTTTATCATTTATATGCTTTGTCATTGAAGGACTTGATGGTGAACACTAATGGAATCCTTAACTCGTGGATGTAGTTGAAATTTCTCCAAAGAAAAATCCAAAGCTAGAGAATGGAGCTTCGACTTTAATCCATTAGGATGAAGGAAAAGAATCGTACCAAAAGTTTTGAAATTTACAACTACTAATTCAAAAAAAGATGCACTAGTATCACAAAGAAATTTTCTTTTCACTTTTTATTTCGTTAGGTATACAAAATTTTGGTGTTATTCTATTAGTCACTTATGATAATGGGTTGGAACATACATAGGGATTGCTAAGTAAGCTCATTAAATCTACTTTGTTTTTTAGTTCTTTAGGTATGCTTATATTGTCTAGGTCATTAGTTACATGTGAAGTTGTTTTTCTAATTTTGTCTAGATCATGATGTTTCTTTTCAAACTTTTATTAGGCGATTGGTATGGGGACAAACGACTTGTGGTTTCATGA

mRNA sequence

ATGCTTGCAAGTATATCCATCCTTGTTCACTGGAAAATGATGGTGTTACGTTTCAAGTACACGAAATGCTTCACATTTTACAAGTTCCATGCTGCTGGTAGAGAGGATGTTGATGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACGCATGTCTTCTCCCATCTGAGGTGATAATAAATGAAATACAGTCAGAGATAAATAGCTCGGAGAGTAAATTGGTTGGCGTAAGAAATCTGAAAGTTGTAAGTAGAGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAAGACTGCCACATCAGAAATAAGAGGCTTCAGGCCAAAAAGGTTCCCCAGAGACTCCGTGACATAAAGGATGTTTCAGGCGATTGGTATGGGGACAAACGACTTGTGGTTTCATGA

Coding sequence (CDS)

ATGCTTGCAAGTATATCCATCCTTGTTCACTGGAAAATGATGGTGTTACGTTTCAAGTACACGAAATGCTTCACATTTTACAAGTTCCATGCTGCTGGTAGAGAGGATGTTGATGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACGCATGTCTTCTCCCATCTGAGGTGATAATAAATGAAATACAGTCAGAGATAAATAGCTCGGAGAGTAAATTGGTTGGCGTAAGAAATCTGAAAGTTGTAAGTAGAGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAAGACTGCCACATCAGAAATAAGAGGCTTCAGGCCAAAAAGGTTCCCCAGAGACTCCGTGACATAAAGGATGTTTCAGGCGATTGGTATGGGGACAAACGACTTGTGGTTTCATGA

Protein sequence

MLASISILVHWKMMVLRFKYTKCFTFYKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKVVSREGWALVQEGEAEKDCHIRNKRLQAKKVPQRLRDIKDVSGDWYGDKRLVVS
Homology
[Close]
BLAST of Pay0008139 vs. ExPASy Swiss-Prot
Match: Q3MIT2 (tRNA pseudouridine synthase Pus10 OS=Homo sapiens OX=9606 GN=PUS10 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-11
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLP-SEVIINEIQSEINSSESKLVGVRNLK 86
           + F ++GREDVDVR LG+GRPF +E+ N   +  +   I E+Q +IN+S +K + VR+L+
Sbjct: 335 FNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQ 394

Query: 87  VVSREGWALVQEGEAEKDCHI-----RNKRLQAKKVPQRLRDIKDVSGD 130
           +V+RE    ++EGE EK          NK +Q K + + L DIKD+  D
Sbjct: 395 LVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI-EFLNDIKDLKID 441

[Close]
BLAST of Pay0008139 vs. ExPASy Swiss-Prot
Match: Q9D3U0 (tRNA pseudouridine synthase Pus10 OS=Mus musculus OX=10090 GN=Pus10 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLP-SEVIINEIQSEINSSESKLVGVRNLK 86
           + F ++GREDVDVR LG+GRPF VE+ N   +  +   + E+Q  IN S  K + VR+L+
Sbjct: 333 FNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQEMKELQQTINKSSDK-IQVRDLQ 392

Query: 87  VVSREGWALVQEGEAEK----DCHIRNKRLQAKKVPQRLRDIKDVSGD 130
           +V+RE    ++EGE EK       I   R   KK    L D+KD+  D
Sbjct: 393 LVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIGFLDDLKDLKID 439

[Close]
BLAST of Pay0008139 vs. ExPASy Swiss-Prot
Match: Q6ING2 (tRNA pseudouridine synthase Pus10 OS=Xenopus laevis OX=8355 GN=pus10 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-09
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEV-----IINEIQSEINSSESKLVGV 86
           + F ++GREDVDVR LG GRPF +E+ N    P +V      I  +Q +IN+S+   + V
Sbjct: 322 FNFSSSGREDVDVRTLGKGRPFAIELLN----PHKVQFTGQEIKALQQKINTSDK--IKV 381

Query: 87  RNLKVVSREGWALVQEGEAEK 103
           R+L++VSRE  A ++EGE EK
Sbjct: 382 RDLQIVSREAVAHMKEGEEEK 396

[Close]
BLAST of Pay0008139 vs. ExPASy Swiss-Prot
Match: B1L7A7 (tRNA pseudouridine synthase Pus10 OS=Korarchaeum cryptofilum (strain OPF8) OX=374847 GN=pus10 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           Y  H AGREDVD RMLG GRPF++E+ +     ++  + E++SEIN   + L+ V+NL+ 
Sbjct: 188 YVLHGAGREDVDARMLGEGRPFVMELLSPKRRSAD--LREVESEINRRAAGLIEVKNLEF 247

Query: 87  VSREGWALVQE 98
             RE   +++E
Sbjct: 248 SRREKIRILKE 256

[Close]
BLAST of Pay0008139 vs. ExPASy Swiss-Prot
Match: D9PYH9 (tRNA pseudouridine synthase Pus10 OS=Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) OX=79929 GN=pus10 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 28  KFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKVV 87
           KFH +GREDVDVRMLG+GRPF++EI+   +   +  +  ++ EIN     +V V +L+  
Sbjct: 220 KFHGSGREDVDVRMLGTGRPFVLEIKEPAIRTPD--LRALEDEINRRARGMVEVADLRFS 279

Query: 88  SREGWALVQEGEAEK 103
           SR     ++E   +K
Sbjct: 280 SRNRKVELKESSRKK 292

[Close]
BLAST of Pay0008139 vs. ExPASy TrEMBL
Match: A0A0A0L378 (tRNA pseudouridine(55) synthase OS=Cucumis sativus OX=3659 GN=Csa_4G653400 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INSSE+KL+GVRNLKV
Sbjct: 327 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKV 386

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 387 VGSEGWALVQEGEAEK 402

[Close]
BLAST of Pay0008139 vs. ExPASy TrEMBL
Match: A0A5A7V921 (tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003460 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INS E+KLVGVRNLKV
Sbjct: 329 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKV 388

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 389 VGSEGWALVQEGEAEK 404

[Close]
BLAST of Pay0008139 vs. ExPASy TrEMBL
Match: A0A5D3D906 (tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00830 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INS E+KLVGVRNLKV
Sbjct: 343 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKV 402

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 403 VGSEGWALVQEGEAEK 418

[Close]
BLAST of Pay0008139 vs. ExPASy TrEMBL
Match: A0A1S3BUF4 (tRNA pseudouridine(55) synthase OS=Cucumis melo OX=3656 GN=LOC103493791 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INS E+KLVGVRNLKV
Sbjct: 329 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKV 388

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 389 VGSEGWALVQEGEAEK 404

[Close]
BLAST of Pay0008139 vs. ExPASy TrEMBL
Match: A0A6J1FB31 (tRNA pseudouridine(55) synthase OS=Cucurbita moschata OX=3662 GN=LOC111443704 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEI+S+IN S++KL+GVRNLKV
Sbjct: 341 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIESKINGSKNKLIGVRNLKV 400

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWA VQEGEAEK
Sbjct: 401 VGSEGWAFVQEGEAEK 416

[Close]
BLAST of Pay0008139 vs. NCBI nr
Match: XP_038897427.1 (tRNA pseudouridine synthase Pus10 [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-29
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INSSE+KLVGVRNLKV
Sbjct: 335 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLVGVRNLKV 394

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 395 VGSEGWALVQEGEAEK 410

[Close]
BLAST of Pay0008139 vs. NCBI nr
Match: XP_011654255.1 (putative tRNA pseudouridine synthase Pus10 [Cucumis sativus] >KGN55479.1 hypothetical protein Csa_012687 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 8.8e-29
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INSSE+KL+GVRNLKV
Sbjct: 327 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKV 386

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 387 VGSEGWALVQEGEAEK 402

[Close]
BLAST of Pay0008139 vs. NCBI nr
Match: XP_008452922.1 (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-28
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INS E+KLVGVRNLKV
Sbjct: 329 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKV 388

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 389 VGSEGWALVQEGEAEK 404

[Close]
BLAST of Pay0008139 vs. NCBI nr
Match: TYK19969.1 (putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-28
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INS E+KLVGVRNLKV
Sbjct: 343 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKV 402

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 403 VGSEGWALVQEGEAEK 418

[Close]
BLAST of Pay0008139 vs. NCBI nr
Match: KAA0064623.1 (putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-28
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFLVEIQNA LLPSE+IINEIQS+INS E+KLVGVRNLKV
Sbjct: 329 YKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKV 388

Query: 87  VSREGWALVQEGEAEK 103
           V  EGWALVQEGEAEK
Sbjct: 389 VGSEGWALVQEGEAEK 404

[Close]
BLAST of Pay0008139 vs. TAIR 10
Match: AT1G20410.1 (Pseudouridine synthase family protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-24
Identity = 49/76 (64.47%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 27  YKFHAAGREDVDVRMLGSGRPFLVEIQNACLLPSEVIINEIQSEINSSESKLVGVRNLKV 86
           YKFHAAGRED+DVRMLGSGRPFL+E+QN+  LPSE  + E++ +IN SE KLVGV++LK 
Sbjct: 313 YKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQSLKEVEEKINKSEKKLVGVKDLKC 372

Query: 87  VSREGWALVQEGEAEK 103
           +  + WA+++EGEAEK
Sbjct: 373 IGSQCWAMMREGEAEK 388

The following BLAST results are available for this feature:
BLAST of Pay0008139 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3MIT23.8e-1141.28tRNA pseudouridine synthase Pus10 OS=Homo sapiens OX=9606 GN=PUS10 PE=1 SV=1[more]
Q9D3U01.6e-0940.74tRNA pseudouridine synthase Pus10 OS=Mus musculus OX=10090 GN=Pus10 PE=1 SV=1[more]
Q6ING23.6e-0945.68tRNA pseudouridine synthase Pus10 OS=Xenopus laevis OX=8355 GN=pus10 PE=2 SV=1[more]
B1L7A74.0e-0842.25tRNA pseudouridine synthase Pus10 OS=Korarchaeum cryptofilum (strain OPF8) OX=37... [more]
D9PYH91.2e-0740.00tRNA pseudouridine synthase Pus10 OS=Methanothermobacter marburgensis (strain AT... [more]
BLAST of Pay0008139 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3784.2e-2989.47tRNA pseudouridine(55) synthase OS=Cucumis sativus OX=3659 GN=Csa_4G653400 PE=3 ... [more]
A0A5A7V9211.2e-2889.47tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3D9061.2e-2889.47tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3BUF41.2e-2889.47tRNA pseudouridine(55) synthase OS=Cucumis melo OX=3656 GN=LOC103493791 PE=3 SV=... [more]
A0A6J1FB312.3e-2784.21tRNA pseudouridine(55) synthase OS=Cucurbita moschata OX=3662 GN=LOC111443704 PE... [more]
BLAST of Pay0008139 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897427.16.7e-2990.79tRNA pseudouridine synthase Pus10 [Benincasa hispida][more]
XP_011654255.18.8e-2989.47putative tRNA pseudouridine synthase Pus10 [Cucumis sativus] >KGN55479.1 hypothe... [more]
XP_008452922.12.5e-2889.47PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis melo][more]
TYK19969.12.5e-2889.47putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa][more]
KAA0064623.12.5e-2889.47putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa][more]
BLAST of Pay0008139 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G20410.12.4e-2464.47Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.2510coord: 4..103
e-value: 5.8E-22
score: 80.1
NoneNo IPR availablePANTHERPTHR21568:SF1BNAC07G15400D PROTEINcoord: 26..104
IPR039894tRNA pseudouridine synthase Pus10-likePANTHERPTHR21568UNCHARACTERIZEDcoord: 26..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0008139.1Pay0008139.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031119 tRNA pseudouridine synthesis
molecular_function GO:0003723 RNA binding
molecular_function GO:0106029 tRNA pseudouridine synthase activity