Pay0007380 (gene) Melon (Payzawat) v1

Overview


Name	Pay0007380
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr02: 18375361 .. 18375722 (+)
RNA-Seq Expression	Pay0007380
Synteny	Pay0007380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACCCAGGAAAAATGCATTGGGAAGCAGCCAAATGGGTACTTAGGTACCTAAAGGGATCTATGAATGCTCAATTAATGTATAAATGTTGTCCTAAAGATTTGTTTAAGCTCTATGATTTTGTAGACTCTGACTACGCAGGGGATTTGGATAAGAGAAGGTCACTAACAGGATACTGTTTCCTAATTGGAGGTAATGTCCTAAGCTAGAAAGTTTCTTTACAATCAGTGGTGGTCCTATCATCTACTGAAGCTGAATATATAGCTCTTGCAGAAGCTATCAAAGAAACTATTTGGTTAAAAGGACTCCTGAAGGACTTTGGCATATCACAAAAATCTGTAAAGATTTTATGTGCTAA

mRNA sequence

ATGGCTAACCCAGGAAAAATGCATTGGGAAGCAGCCAAATGGGTACTTAGGTACCTAAAGGGATCTATGAATGCTCAATTAATGTATAAATGTTGTCCTAAAGATTTGTTTAAGCTCTATGATTTTGTAGACTCTGACTACGCAGGGGATTTGGATAAGAGAAGGTCACTAACAGGATACTGTTTCCTAATTGGAGGACTTTGGCATATCACAAAAATCTGTAAAGATTTTATGTGCTAA

Coding sequence (CDS)

ATGGCTAACCCAGGAAAAATGCATTGGGAAGCAGCCAAATGGGTACTTAGGTACCTAAAGGGATCTATGAATGCTCAATTAATGTATAAATGTTGTCCTAAAGATTTGTTTAAGCTCTATGATTTTGTAGACTCTGACTACGCAGGGGATTTGGATAAGAGAAGGTCACTAACAGGATACTGTTTCCTAATTGGAGGACTTTGGCATATCACAAAAATCTGTAAAGATTTTATGTGCTAA

Protein sequence

MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGYCFLIGGLWHITKICKDFMC

Homology

[Close]

BLAST of Pay0007380 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-10
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 1    MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
            + NPGK HWEA KW+LRYL+G+    L   C       L  + D+D AGD+D R+S TGY
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCL---CFGGSDPILKGYTDADMAGDIDNRKSSTGY 1199

Query: 61   CFLIGG 67
             F   G
Sbjct: 1200 LFTFSG 1202

[Close]

BLAST of Pay0007380 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.7e-06
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 2  ANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGYC 61
          ++P   HW+A K VLRYL+ +    L +        KL  + D+D+AGD++ RRS +GY 
Sbjct: 36 SDPCPTHWQALKRVLRYLQSTQTYGLEF--TRAGTAKLVGYSDADWAGDVESRRSTSGYL 95

Query: 62 FLIGG 67
          F + G
Sbjct: 96 FKLNG 98

[Close]

BLAST of Pay0007380 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-05
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 9    WEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGYCF 63
            W+  K VLRYLKG+++ +L++K       K+  +VDSD+AG    R+S TGY F
Sbjct: 1218 WQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLF 1271

[Close]

BLAST of Pay0007380 vs. ExPASy Swiss-Prot
Match: P93290 (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-04
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 10 EAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGYCFLIGGLWH 69
          +A   VL Y+KG++   L Y     DL +L  F DSD+A   D RRS+TG+C L+  LW 
Sbjct: 30 QAVYKVLHYVKGTVGQGLFYS-ATSDL-QLKAFADSDWASCPDTRRSVTGFCSLV-PLWF 89

Query: 70 ITKICKDFM 79
          +  + K  +
Sbjct: 90 LGALRKSIL 95

[Close]

BLAST of Pay0007380 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.5e-04
Identity = 24/65 (36.92%), Postives = 33/65 (50.77%), Query Frame = 0


Query: 1    MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
            M  P   HW A K VLRYL G+ +  +  K    +   L+ + D+D+AGD D   S  GY
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLK--KGNTLSLHAYSDADWAGDTDDYVSTNGY 1315

Query: 61   CFLIG 66
               +G
Sbjct: 1316 IVYLG 1318

[Close]

BLAST of Pay0007380 vs. ExPASy TrEMBL
Match: A0A5D3BYG1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00390 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.4e-15
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           M NPG+ HWEA KWV  YLKG  N  L+YK        LY +VDSDYAGDLDKRRSL G+
Sbjct: 66  MGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGF 125

Query: 61  CFLIGG 67
            F++GG
Sbjct: 126 TFVLGG 131

[Close]

BLAST of Pay0007380 vs. ExPASy TrEMBL
Match: A0A5A7TY71 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00940 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.4e-15
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           M NPG+ HWEA KWV  YLKG  N  L+YK        LY +VDSDYAGDLDKRRSL G+
Sbjct: 66  MGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGF 125

Query: 61  CFLIGG 67
            F++GG
Sbjct: 126 TFVLGG 131

[Close]

BLAST of Pay0007380 vs. ExPASy TrEMBL
Match: A0A803M3W2 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.5e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           MANPGK+HWEA KW+LRYLKG+++ +L   C   D  ++  FVDSDYAGDLD+RRS TGY
Sbjct: 121 MANPGKIHWEAVKWILRYLKGTIDTRL---CFGGDNCQISGFVDSDYAGDLDRRRSTTGY 180

Query: 61  CFLIGG 67
            F I G
Sbjct: 181 AFTIFG 183

[Close]

BLAST of Pay0007380 vs. ExPASy TrEMBL
Match: A0A176W7N9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Marchantia polymorpha subsp. ruderalis OX=1480154 GN=AXG93_1626s1040 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.8e-15
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDL-FKLYDFVDSDYAGDLDKRRSLTG 60
           M+NPGK HW+A KWVLRY++GS +  ++Y C  +   F++  FVDSDYAG LD RRSLTG
Sbjct: 95  MSNPGKAHWQAVKWVLRYIRGSHDTGIIYGCNNRSSEFQVEGFVDSDYAGSLDTRRSLTG 154

Query: 61  YCFLIGG 67
           Y F IGG
Sbjct: 155 YLFTIGG 161

[Close]

BLAST of Pay0007380 vs. ExPASy TrEMBL
Match: A0A2K3KT95 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g056750 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.7e-14
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 1  MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
          MANPGK HWEA KW+LRYLKG+++  L   C   D   +  FVDSDYAGDLD+RRS TGY
Sbjct: 35 MANPGKTHWEAVKWILRYLKGTIDTCL---CFGGDACHINGFVDSDYAGDLDRRRSTTGY 94

Query: 61 CFLIGGL 68
           F I G+
Sbjct: 95 VFQIHGV 98

[Close]

BLAST of Pay0007380 vs. NCBI nr
Match: XP_038895984.1 (secreted RxLR effector protein 161-like [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           MANPGK HWEA KW++RYLKG+ +A+LMY+  P    KL  +VDSDYAGDLDKRRSL+GY
Sbjct: 68  MANPGKRHWEATKWIMRYLKGTTSAKLMYQQLPNREPKLIGYVDSDYAGDLDKRRSLSGY 127

Query: 61  CFLIG 66
            FL G
Sbjct: 128 IFLYG 132

[Close]

BLAST of Pay0007380 vs. NCBI nr
Match: KAA0046926.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-15
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           M NPG+ HWEA KWV  YLKG  N  L+YK        LY +VDSDYAGDLDKRRSL G+
Sbjct: 66  MGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGF 125

Query: 61  CFLIGG 67
            F++GG
Sbjct: 126 TFVLGG 131

[Close]

BLAST of Pay0007380 vs. NCBI nr
Match: TYK03226.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-15
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           M NPG+ HWEA KWV  YLKG  N  L+YK        LY +VDSDYAGDLDKRRSL G+
Sbjct: 66  MGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGF 125

Query: 61  CFLIGG 67
            F++GG
Sbjct: 126 TFVLGG 131

[Close]

BLAST of Pay0007380 vs. NCBI nr
Match: KAG9447272.1 (hypothetical protein H6P81_013400 [Aristolochia fimbriata])

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           M+NPG+ HW+A KW+LRYL+G+ +  L +K   KD F L+ +VDSDYAGDLD+RRS+TGY
Sbjct: 916 MSNPGREHWQAVKWILRYLRGTSSTCLAFK---KDDFSLFGYVDSDYAGDLDRRRSITGY 975

Query: 61  CFLIGG 67
            F + G
Sbjct: 976 VFTLAG 978

[Close]

BLAST of Pay0007380 vs. NCBI nr
Match: XP_038895810.1 (secreted RxLR effector protein 161-like [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           M+NP K HWEA+KW+LRYL  S N++L+Y+   +   +LY +VD DYAGDLDK RSLTGY
Sbjct: 60  MSNPSKRHWEASKWILRYLVWSKNSKLVYQRSAEPKLELYGYVDVDYAGDLDKMRSLTGY 119

Query: 61  CFLIG 66
            FL G
Sbjct: 120 LFLFG 124

[Close]

BLAST of Pay0007380 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.4e-05
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 10 EAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGYCFLIGGLWH 69
          +A   VL Y+KG++   L Y     DL +L  F DSD+A   D RRS+TG+C L+  LW 
Sbjct: 30 QAVYKVLHYVKGTVGQGLFYS-ATSDL-QLKAFADSDWASCPDTRRSVTGFCSLV-PLWF 89

Query: 70 ITKICKDFM 79
          +  + K  +
Sbjct: 90 LGALRKSIL 95

[Close]

BLAST of Pay0007380 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 7.7e-04
Identity = 24/65 (36.92%), Postives = 33/65 (50.77%), Query Frame = 0


Query: 1   MANPGKMHWEAAKWVLRYLKGSMNAQLMYKCCPKDLFKLYDFVDSDYAGDLDKRRSLTGY 60
           M  P    ++  K VLRY+KG++   L      K    +  F DSD+AG    RRS TG+
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK--LNVQAFCDSDWAGCTSTRRSTTGF 187

Query: 61  CFLIG 66
           C  +G
Sbjct: 188 CTFLG 190

The following BLAST results are available for this feature:

BLAST of Pay0007380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.2e-10	46.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	4.7e-06	38.46	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	4.0e-05	44.44	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P93290	3.4e-04	39.13	Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	7.5e-04	36.92	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Pay0007380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYG1	4.4e-15	60.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TY71	4.4e-15	60.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A803M3W2	7.5e-15	62.12	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A176W7N9	9.8e-15	59.70	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Marchantia pol...	[more]
A0A2K3KT95	3.7e-14	61.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens...	[more]

BLAST of Pay0007380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895984.1	2.6e-17	67.69	secreted RxLR effector protein 161-like [Benincasa hispida]	[more]
KAA0046926.1	9.1e-15	60.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK03226.1	9.1e-15	60.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAG9447272.1	1.6e-14	57.58	hypothetical protein H6P81_013400 [Aristolochia fimbriata]	[more]
XP_038895810.1	1.6e-14	60.00	secreted RxLR effector protein 161-like [Benincasa hispida]	[more]

BLAST of Pay0007380 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00240.1	2.4e-05	39.13	Gag-Pol-related retrotransposon family protein	[more]
ATMG00810.1	7.7e-04	36.92	DNA/RNA polymerases superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0007380.1	Pay0007380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016779	nucleotidyltransferase activity