Pay0006060 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006060
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	E3 ubiquitin-protein ligase RHA2B-like
Location	chr08: 4161401 .. 4162951 (+)
RNA-Seq Expression	Pay0006060
Synteny	Pay0006060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCACTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTTTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACGCCGACAAGCGCGTAATCACGACGGCTCAGTTTTTGAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGTCTCGATAATTGGTTGAAACTCTGTTTCGCTACATGTCCGCTTTGCCGGAGTAAGGTTTTGCCCGACGATATCGTCGCCGGCTACCATAGGCTTCGTGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAGGGCGAAACACCAATTTTATTTTGTTTTTAATCACAGAATAGAATTAAATAACATAGAATGTTGATTGTCTGTAGATTAACTAGGGAAATATTGTTTTTCTCCCCTTCATTGACGAGCAATAACGTTAAGAGAACGGCTCGTTTCTGGTTCGATTGATCTCTGTAGCGAGATCGAGATAAATCTAAATCGTGTATGTTTCTCTTTACTTGCAATTATGCAACCCATCTGTTTGATGTGTTGTTTGCATGATTGCTTCCTACTCTTCTTGGTCATTCGTCAACGAATCATTAATTTTGGAGACACCCAATTTACATCTTGACGGAGACCTTTTTCTTTTTAACCCAATAACGCACTGAAATCCTCACTAAAATCATCCAAATCACAACAACTTTTTTTCCATCAGATAGTTTACTTTGGCTATCCAAAGGATCTATTGAGATTTTAAAGATATTAGTTAGTTAGATGATCGTCTATTAGTCTCTTTTGATGTGGGCTTAGTTCTCTCCGTAGGACCAGGAGTGATGGTGCAAACTGAATTTTTATAATTTTAGTGGATGCGAGTTGGTGATCTAATTTATGGTTCTCTTACAATATAACTAGAACATGGTATGTGATGGCATTTATTAAGAACATTGAGTGAAAGGAGAAGCATTCAAAATTTGATGGATTTTCCCTTGATATTTTCATGGGGATTTAGGTGGAGATGGTAGGAGAAGGACTTAATGCTCTGTTTGTGTTCTGTATCTAAATGCACAACAAACTGATTGAGCTCGTTTTCTCTATAGTTAAACCTCAATAGCAAAAGTGAAACAAATGGATTTTGTTTAGCTCACCATTTTCATAAGTTTGCACATTTATCAAAAAATTTCTTTTTACAACACTGCAACCCATAGACAAGCTTACTAAACACAAGATATTAACTCTATACTTAAACAAACTTAAAATGTTTCTCGTTGGGATGATCTGAAACTAAAGCTACAAGGCCTTTTTTTTGTAGTGTTTGAATCTCGTTACTTCCTCGTACCTTTTGGAACAGTTGGAGTTTTTGTTTTCTTCTACTTTTGA

mRNA sequence

ATGGGAGCACTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTTTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACGCCGACAAGCGCGTAATCACGACGGCTCAGTTTTTGAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGTCTCGATAATTGGTTGAAACTCTGTTTCGCTACATGTCCGCTTTGCCGGAGTAAGGTTTTGCCCGACGATATCGTCGCCGGCTACCATAGGCTTCGTGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGTGTTTGAATCTCGTTACTTCCTCGTACCTTTTGGAACAGTTGGAGTTTTTGTTTTCTTCTACTTTTGA

Coding sequence (CDS)

ATGGGAGCACTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTTTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTAAGACCTAACGCCGACAAGCGCGTAATCACGACGGCTCAGTTTTTGAAACTCATCGAAGACAAGAATCCCACCATCCGTTTCTCAAATAAGGTCACCCCAAGTATCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGAGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGTCTCGATAATTGGTTGAAACTCTGTTTCGCTACATGTCCGCTTTGCCGGAGTAAGGTTTTGCCCGACGATATCGTCGCCGGCTACCATAGGCTTCGTGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGTGTTTGAATCTCGTTACTTCCTCGTACCTTTTGGAACAGTTGGAGTTTTTGTTTTCTTCTACTTTTGA

Protein sequence

MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVPFGTVGVFVFFYF

Homology

[Close]

BLAST of Pay0006060 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-14
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 22  LLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPTIRFSNKVTPSIADQCAVCLSE 81
           LL  F   +R++  L P++   V+ T+    L +  N    FS + + + A  C VCLS+
Sbjct: 22  LLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVCLSK 81

Query: 82  FEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
            + GE+VRKL C H FHK CL+ WL+     CPLCRS +LP
Sbjct: 82  LKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Pay0006060 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of Pay0006060 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-12
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 56  DKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPL 115
           D  PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+
Sbjct: 197 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPV 256

Query: 116 CRSKVLPDD 125
           CR ++  DD
Sbjct: 257 CRFELPTDD 264

[Close]

BLAST of Pay0006060 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 59  PTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCR 118
           P  R++ K      + C +CLS+FEEGE V+ +  C H FH DC+D WL   + TCPLCR
Sbjct: 125 PVYRYT-KAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLS-SYVTCPLCR 184

Query: 119 SKVLPDDIVAGYHRLRDRVEYDGSDE 144
           S  L  D   G   +++  + D ++E
Sbjct: 185 SNQLFSDKDLG---MQEPPDQDSAEE 205

[Close]

BLAST of Pay0006060 vs. ExPASy Swiss-Prot
Match: Q0VD51 (E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 73  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
           D CA+CL E+E+G+K+R L C+H +H  C+D WL     TCP+C+ KV+P
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287

[Close]

BLAST of Pay0006060 vs. ExPASy TrEMBL
Match: A0A1S3B160 (probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC103485001 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.6e-94
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVPFGTVGVFVFFYF 176
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVPFGTVGVFVFFYF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVPFGTVGVFVFFYF 175

[Close]

BLAST of Pay0006060 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.4e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Pay0006060 vs. ExPASy TrEMBL
Match: A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.5e-81
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKRVITTAQF KLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Pay0006060 vs. ExPASy TrEMBL
Match: A0A6J1HG49 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 144/153 (94.12%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Pay0006060 vs. ExPASy TrEMBL
Match: A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.2e-76
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKRVITT Q+ KLIE++NPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Pay0006060 vs. NCBI nr
Match: XP_008440648.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 7.5e-94
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVPFGTVGVFVFFYF 176
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVPFGTVGVFVFFYF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVPFGTVGVFVFFYF 175

[Close]

BLAST of Pay0006060 vs. NCBI nr
Match: KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Pay0006060 vs. NCBI nr
Match: XP_038883588.1 (E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida])

HSP 1 Score: 307.4 bits (786), Expect = 8.0e-80
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRV+TTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVVTTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T SIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKLTSSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFE 157
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  E
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGVE 156

[Close]

BLAST of Pay0006060 vs. NCBI nr
Match: XP_022963436.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_023517189.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7026818.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.5 bits (763), Expect = 3.7e-77
Identity = 144/153 (94.12%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Pay0006060 vs. NCBI nr
Match: XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia])

HSP 1 Score: 295.8 bits (756), Expect = 2.4e-76
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKRVITT Q+ KLIE++NPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60

Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Pay0006060 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 22  LLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPTIRFSNKVTPSIADQCAVCLSE 81
           LL  F   +R++  L P++   V+ T+    L +  N    FS + + + A  C VCLS+
Sbjct: 22  LLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVCLSK 81

Query: 82  FEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
            + GE+VRKL C H FHK CL+ WL+     CPLCRS +LP
Sbjct: 82  LKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Pay0006060 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of Pay0006060 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-13
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 56  DKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPL 115
           D  PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+
Sbjct: 197 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPV 256

Query: 116 CRSKVLPDD 125
           CR ++  DD
Sbjct: 257 CRFELPTDD 264

[Close]

BLAST of Pay0006060 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-12
Identity = 28/70 (40.00%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           I+   K       QC +CL E+EE + +R L C+H FHK C+D WLK     CPLCR  +
Sbjct: 476 IKLYTKSQSEDPSQCYICLVEYEEADSIRTLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 535

Query: 121 LPDDIVAGYH 131
              D  +  H
Sbjct: 536 CRHDPSSEQH 545

[Close]

BLAST of Pay0006060 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-12
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 59  PTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCR 118
           P  R++ K      + C +CLS+FEEGE V+ +  C H FH DC+D WL   + TCPLCR
Sbjct: 125 PVYRYT-KAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLS-SYVTCPLCR 184

Query: 119 SKVLPDDIVAGYHRLRDRVEYDGSDE 144
           S  L  D   G   +++  + D ++E
Sbjct: 185 SNQLFSDKDLG---MQEPPDQDSAEE 205

The following BLAST results are available for this feature:

BLAST of Pay0006060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU51	2.7e-14	40.59	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	2.3e-13	56.14	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q8LPN7	5.7e-12	43.48	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9SJJ7	1.1e-10	39.53	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q0VD51	1.1e-10	50.00	E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1	[more]

BLAST of Pay0006060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B160	3.6e-94	100.00	probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC1034850...	[more]
A0A5A7SYH1	5.4e-82	100.00	Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KM08	3.5e-81	98.69	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 P...	[more]
A0A6J1HG49	1.8e-77	94.12	E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1BWI1	1.2e-76	92.81	E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Pay0006060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440648.1	7.5e-94	100.00	PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]	[more]
KAA0036272.1	1.1e-81	100.00	putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666....	[more]
XP_038883588.1	8.0e-80	96.15	E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]	[more]
XP_022963436.1	3.7e-77	94.12	E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_02351...	[more]
XP_022132528.1	2.4e-76	92.81	E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]	[more]

BLAST of Pay0006060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01150.1	1.9e-15	40.59	RING-H2 finger protein 2B	[more]
AT1G15100.1	1.6e-14	56.14	RING-H2 finger A2A	[more]
AT3G19950.1	4.1e-13	43.48	RING/U-box superfamily protein	[more]
AT5G45290.1	5.9e-12	40.00	RING/U-box superfamily protein	[more]
AT2G27940.1	7.7e-12	39.53	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 75..116 e-value: 1.5E-6 score: 37.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 73..117 e-value: 7.3E-13 score: 48.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 75..117 score: 12.725326
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..124 e-value: 2.8E-20 score: 73.3
None	No IPR available	PANTHER	PTHR47662	FAMILY NOT NAMED	coord: 1..157
None	No IPR available	PANTHER	PTHR47662:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..157
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 74..117 e-value: 1.98403E-19 score: 74.9557
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 74..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006060.1	Pay0006060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane