Pay0005484 (gene) Melon (Payzawat) v1

Overview


Name	Pay0005484
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	CCHC-type domain-containing protein
Location	chr08: 8531516 .. 8532043 (-)
RNA-Seq Expression	Pay0005484
Synteny	Pay0005484

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTCTTACCAAATTAGAATTTCTAGCTCTTGATATCAATGGTGATAATTATTTATCATGGGTACTTGATGCTGAAATTCATTTGGATGCCATGAATTTTGGAGAAACGATTAAAGAAGGAAACACGACTTCAAGTCAAGAAAAGGCGACAGCCATGATTTTCCTTCGACATCATCTTCATGAGGGACTAAAGATTGAATATCTTACGATAAAAGATCCCTATGAACTATGGCAAAGTTTAAAAGAATTGTATGATCATCAAAAAAGTGTGATTCTTCCTAAAGCTCGATATGATTGGATGCACTTAAGGTTGCAAGATTTTAAATCAGTAAGTGATTATAATTCCACATTATTTAAAACTTGTTCAAAATTATTATTATGTGGAGAAAAAGTTACTGATGAAGATATGTTAGAGAAAACTTTTTCAACATTTCATGTCTCGAATATGCTCCTGCAGCAATATCGAGAAAGAAGTTTTAAAAAGTATTCCGAACTCATATCATGTCTTCTTGTGGCTGAATAA

mRNA sequence

ATGTCAAGTCTTACCAAATTAGAATTTCTAGCTCTTGATATCAATGGTGATAATTATTTATCATGGGTACTTGATGCTGAAATTCATTTGGATGCCATGAATTTTGGAGAAACGATTAAAGAAGGAAACACGACTTCAAGTCAAGAAAAGGCGACAGCCATGATTTTCCTTCGACATCATCTTCATGAGGGACTAAAGATTGAATATCTTACGATAAAAGATCCCTATGAACTATGGCAAAGTTTAAAAGAATTGTATGATCATCAAAAAAGTGTGATTCTTCCTAAAGCTCGATATGATTGGATGCACTTAAGGTTGCAAGATTTTAAATCAGTAAGTGATTATAATTCCACATTATTTAAAACTTGTTCAAAATTATTATTATGTGGAGAAAAAGTTACTGATGAAGATATGTTAGAGAAAACTTTTTCAACATTTCATGTCTCGAATATGCTCCTGCAGCAATATCGAGAAAGAAGTTTTAAAAAGTATTCCGAACTCATATCATGTCTTCTTGTGGCTGAATAA

Coding sequence (CDS)

ATGTCAAGTCTTACCAAATTAGAATTTCTAGCTCTTGATATCAATGGTGATAATTATTTATCATGGGTACTTGATGCTGAAATTCATTTGGATGCCATGAATTTTGGAGAAACGATTAAAGAAGGAAACACGACTTCAAGTCAAGAAAAGGCGACAGCCATGATTTTCCTTCGACATCATCTTCATGAGGGACTAAAGATTGAATATCTTACGATAAAAGATCCCTATGAACTATGGCAAAGTTTAAAAGAATTGTATGATCATCAAAAAAGTGTGATTCTTCCTAAAGCTCGATATGATTGGATGCACTTAAGGTTGCAAGATTTTAAATCAGTAAGTGATTATAATTCCACATTATTTAAAACTTGTTCAAAATTATTATTATGTGGAGAAAAAGTTACTGATGAAGATATGTTAGAGAAAACTTTTTCAACATTTCATGTCTCGAATATGCTCCTGCAGCAATATCGAGAAAGAAGTTTTAAAAAGTATTCCGAACTCATATCATGTCTTCTTGTGGCTGAATAA

Protein sequence

MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHHLHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLFKTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLLQQYRERSFKKYSELISCLLVAE

Homology

[Close]

BLAST of Pay0005484 vs. ExPASy TrEMBL
Match: A0A6J1CSH6 (uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013806 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 147/176 (83.52%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           M++LTKLEF+ALDING+NYLSWVLDAEIHLDAMN GETIKE NTT+SQE A AMIFLRHH
Sbjct: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTTSQENAKAMIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLK+EYLTIKD   LWQ+LKE YDHQK+VILPKARY+WMHLRLQDFKSVSDYNS LF
Sbjct: 61  LHEGLKMEYLTIKDLLALWQNLKERYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSALF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           K  SKL LCGEK+TD DMLEKT+STFHVSN+LL QQYRE+ FKKYSELISCLLVA+
Sbjct: 121 KISSKLKLCGEKITDSDMLEKTYSTFHVSNILLQQQYREKGFKKYSELISCLLVAK 176

[Close]

BLAST of Pay0005484 vs. ExPASy TrEMBL
Match: A0A438ID00 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1841 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 136/176 (77.27%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS++TKLEF+ALDI+G NYLSW+LDAE+HLDAMN G TIK+GN  S Q++A A+IFLRHH
Sbjct: 1   MSNITKLEFVALDISGKNYLSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLK EYLT+KDP+ LW +LKE YDHQK+VILPKARYDWMHLRLQDFK+VS+YNS LF
Sbjct: 61  LHEGLKNEYLTVKDPFTLWSNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           K  S+L LCGEK+T+EDMLEKTF+TFH SN+LL QQYRER F KYSELISCLLVAE
Sbjct: 121 KISSQLKLCGEKITEEDMLEKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAE 176

[Close]

BLAST of Pay0005484 vs. ExPASy TrEMBL
Match: A5B4M9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015758 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 136/176 (77.27%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS++TKLEF+ALDI+G NYLSW+LDAE+HLDAMN G TIK+GN  S Q++A A+IFLRHH
Sbjct: 1   MSNITKLEFVALDISGKNYLSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLK EYLT+KDP+ LW +LKE YDHQK+VILPKARYDWMHLRLQDFK+VS+YNS LF
Sbjct: 61  LHEGLKNEYLTVKDPFTLWSNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           K  S+L LCGEK+T+EDMLEKTF+TFH SN+LL QQYRER F KYSELISCLLVAE
Sbjct: 121 KISSQLKLCGEKITEEDMLEKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAE 176

[Close]

BLAST of Pay0005484 vs. ExPASy TrEMBL
Match: A0A286QJ35 (Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 136/176 (77.27%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS++TKLEF+ALDI+G NYLSW+LDAE+HLDAMN G TIK+GN  S Q++A A+IFLRHH
Sbjct: 1   MSNITKLEFVALDISGKNYLSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLK EYLT+KDP+ LW +LKE YDHQK+VILPKARYDWMHLRLQDFK+VS+YNS LF
Sbjct: 61  LHEGLKNEYLTVKDPFTLWSNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           K  S+L LCGEK+T+EDMLEKTF+TFH SN+LL QQYRER F KYSELISCLLVAE
Sbjct: 121 KISSQLKLCGEKITEEDMLEKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAE 176

[Close]

BLAST of Pay0005484 vs. ExPASy TrEMBL
Match: A5AJ43 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.6e-73
Identity = 135/176 (76.70%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS++TKLEF+ALDI+G NYLSW+LDAE+HLDAMN G TIK+GN  S Q++A A+IFLRHH
Sbjct: 1   MSNITKLEFVALDISGKNYLSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLK EY T+KDP+ LW +LKE YDHQK+VILPKARYDWMHLRLQDFK+VS+YNS LF
Sbjct: 61  LHEGLKNEYFTVKDPFTLWSNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           K  S+L LCGEK+T+EDMLEKTF+TFH SN+LL QQYRER F KYSELISCLLVAE
Sbjct: 121 KISSQLKLCGEKITEEDMLEKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAE 176

[Close]

BLAST of Pay0005484 vs. NCBI nr
Match: XP_022144017.1 (uncharacterized protein LOC111013806 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 3.7e-77
Identity = 147/176 (83.52%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           M++LTKLEF+ALDING+NYLSWVLDAEIHLDAMN GETIKE NTT+SQE A AMIFLRHH
Sbjct: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTTSQENAKAMIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLK+EYLTIKD   LWQ+LKE YDHQK+VILPKARY+WMHLRLQDFKSVSDYNS LF
Sbjct: 61  LHEGLKMEYLTIKDLLALWQNLKERYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSALF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           K  SKL LCGEK+TD DMLEKT+STFHVSN+LL QQYRE+ FKKYSELISCLLVA+
Sbjct: 121 KISSKLKLCGEKITDSDMLEKTYSTFHVSNILLQQQYREKGFKKYSELISCLLVAK 176

[Close]

BLAST of Pay0005484 vs. NCBI nr
Match: XP_028787995.1 (uncharacterized protein LOC114743980 [Prosopis alba])

HSP 1 Score: 287.7 bits (735), Expect = 6.6e-74
Identity = 140/176 (79.55%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS+LTKLEF+ALDI G NYLSW+LDAEIHL+A   G+TIKEGN  S+Q+KA AMIFLRHH
Sbjct: 1   MSNLTKLEFVALDITGKNYLSWILDAEIHLNANGLGDTIKEGNQASNQDKAKAMIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLKIEYLTIKDP  LW +LKE YDHQK+VILPKARYDWMHLRLQDFKSV +YNS +F
Sbjct: 61  LHEGLKIEYLTIKDPLVLWNNLKERYDHQKTVILPKARYDWMHLRLQDFKSVIEYNSAMF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           +  S+L LCGEK+TDEDMLEKTFSTFH SN+LL QQYRE+ FKKYSELISCLLVAE
Sbjct: 121 RISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQQQYREKGFKKYSELISCLLVAE 176

[Close]

BLAST of Pay0005484 vs. NCBI nr
Match: XP_028760969.1 (uncharacterized protein LOC114719625 [Prosopis alba])

HSP 1 Score: 287.3 bits (734), Expect = 8.6e-74
Identity = 139/176 (78.98%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS+LTKLEF+ALDI G NYLSW+LDAEIHL+A   G+TIKEGN  S+Q+KA AMIFLRHH
Sbjct: 1   MSNLTKLEFVALDITGKNYLSWILDAEIHLNANGLGDTIKEGNQASNQDKAKAMIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLKIEYLT+KDP  LW +LKE YDHQK+VILPKARYDWMHLRLQDFKSV +YNS +F
Sbjct: 61  LHEGLKIEYLTVKDPLVLWNNLKERYDHQKTVILPKARYDWMHLRLQDFKSVIEYNSAMF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           +  S+L LCGEK+TDEDMLEKTFSTFH SN+LL QQYRE+ FKKYSELISCLLVAE
Sbjct: 121 RISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQQQYREKGFKKYSELISCLLVAE 176

[Close]

BLAST of Pay0005484 vs. NCBI nr
Match: XP_028755102.1 (uncharacterized protein LOC114714527 [Prosopis alba])

HSP 1 Score: 287.3 bits (734), Expect = 8.6e-74
Identity = 139/176 (78.98%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS+LTKLEF+ALDI G NYLSW+LDAEIHL+A   G+TIKEGN  S+Q+KA AMIFLRHH
Sbjct: 1   MSNLTKLEFVALDITGKNYLSWILDAEIHLNANGLGDTIKEGNQASNQDKAKAMIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLKIEYLT+KDP  LW +LKE YDHQK+VILPKARYDWMHLRLQDFKSV +YNS +F
Sbjct: 61  LHEGLKIEYLTVKDPLVLWNNLKERYDHQKTVILPKARYDWMHLRLQDFKSVIEYNSAMF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           +  S+L LCGEK+TDEDMLEKTFSTFH SN+LL QQYRE+ FKKYSELISCLLVAE
Sbjct: 121 RISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQQQYREKGFKKYSELISCLLVAE 176

[Close]

BLAST of Pay0005484 vs. NCBI nr
Match: XP_028767563.1 (uncharacterized protein LOC114725246 [Prosopis alba] >XP_028771288.1 uncharacterized protein LOC114728545 [Prosopis alba] >XP_028771292.1 uncharacterized protein LOC114728549 [Prosopis alba])

HSP 1 Score: 287.3 bits (734), Expect = 8.6e-74
Identity = 139/176 (78.98%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MSSLTKLEFLALDINGDNYLSWVLDAEIHLDAMNFGETIKEGNTTSSQEKATAMIFLRHH 60
           MS+LTKLEF+ALDI G NYLSW+LDAEIHL+A   G+TIKEGN  S+Q+KA AMIFLRHH
Sbjct: 1   MSNLTKLEFVALDITGKNYLSWILDAEIHLNANGLGDTIKEGNQASNQDKAKAMIFLRHH 60

Query: 61  LHEGLKIEYLTIKDPYELWQSLKELYDHQKSVILPKARYDWMHLRLQDFKSVSDYNSTLF 120
           LHEGLKIEYLT+KDP  LW +LKE YDHQK+VILPKARYDWMHLRLQDFKSV +YNS +F
Sbjct: 61  LHEGLKIEYLTVKDPLVLWNNLKERYDHQKTVILPKARYDWMHLRLQDFKSVIEYNSAMF 120

Query: 121 KTCSKLLLCGEKVTDEDMLEKTFSTFHVSNMLL-QQYRERSFKKYSELISCLLVAE 176
           +  S+L LCGEK+TDEDMLEKTFSTFH SN+LL QQYRE+ FKKYSELISCLLVAE
Sbjct: 121 RISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQQQYREKGFKKYSELISCLLVAE 176

The following BLAST results are available for this feature:

BLAST of Pay0005484 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0005484 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSH6	1.8e-77	83.52	uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A438ID00	1.6e-73	77.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5B4M9	1.6e-73	77.27	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015758 PE=4 SV=1	[more]
A0A286QJ35	1.6e-73	77.27	Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1	[more]
A5AJ43	4.6e-73	76.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1	[more]

BLAST of Pay0005484 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144017.1	3.7e-77	83.52	uncharacterized protein LOC111013806 [Momordica charantia]	[more]
XP_028787995.1	6.6e-74	79.55	uncharacterized protein LOC114743980 [Prosopis alba]	[more]
XP_028760969.1	8.6e-74	78.98	uncharacterized protein LOC114719625 [Prosopis alba]	[more]
XP_028755102.1	8.6e-74	78.98	uncharacterized protein LOC114714527 [Prosopis alba]	[more]
XP_028767563.1	8.6e-74	78.98	uncharacterized protein LOC114725246 [Prosopis alba] >XP_028771288.1 uncharacter...	[more]

BLAST of Pay0005484 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 47..141 e-value: 1.5E-7 score: 31.2
None	No IPR available	PANTHER	PTHR33325	ZINC FINGER, CCHC-TYPE-RELATED	coord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0005484.1	Pay0005484.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding