Pay0003073 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003073
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr01: 16451597 .. 16452136 (-)
RNA-Seq Expression	Pay0003073
Synteny	Pay0003073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGATGAACAGGGTGTTTAAGGATTTCTCAGACGCGTTTGTTATAGTTTTTATTGACGATATCTTGGTTTGCTTCAAGACAAAGGCCGAGCATGAGGAGCATTTGCATCAAGTTTTAGGGACTCTCCGAACTAATAAGTTGTATGCCAAGTATTCCAAGTGTGAGTTCTGCCTGAAGAAGGTATCCTTTCTTAGACATGTAGTGTCCAGTGAGGGAGTTTCTGTAGACTCAACAAAGATTGAGGCTGTTACTAGTTGGCCTCAACCGTCTACAGTCAGTGAGGTTCGTAGTTTTCTGGATCTAGCAGGTTATTACAGAAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGATTCAGTTGACCTGGAAAGGCACTCCCTTTGTTTGGAGCCCAGCATGTGAGAGTAGTTTCCAGGAGCTTAAGAAGAAGCTTGTATCTGCACTAGTTCTTACAGTGCCAAATGGATCTAGAAGTTTCGTGATCTACAGTGATGCCTCAAAGAAAGGATTGGGTTGTGTCTTAATGTAG

mRNA sequence

ATGGATTTGATGAACAGGGTGTTTAAGGATTTCTCAGACGCGTTTGTTATAGTTTTTATTGACGATATCTTGGTTTGCTTCAAGACAAAGGCCGAGCATGAGGAGCATTTGCATCAAGTTTTAGGGACTCTCCGAACTAATAAGTTGTATGCCAAGTATTCCAAGTGTGAGTTCTGCCTGAAGAAGGTATCCTTTCTTAGACATGTAGTGTCCAGTGAGGGAGTTTCTGTAGACTCAACAAAGATTGAGGCTGTTACTAGTTGGCCTCAACCGTCTACAGTCAGTGAGGTTCGTAGTTTTCTGGATCTAGCAGGTTATTACAGAAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGATTCAGTTGACCTGGAAAGGCACTCCCTTTGTTTGGAGCCCAGCATGTGAGAGTAGTTTCCAGGAGCTTAAGAAGAAGCTTGTATCTGCACTAGTTCTTACAGTGCCAAATGGATCTAGAAGTTTCGTGATCTACAGTGATGCCTCAAAGAAAGGATTGGGTTGTGTCTTAATGTAG

Coding sequence (CDS)

ATGGATTTGATGAACAGGGTGTTTAAGGATTTCTCAGACGCGTTTGTTATAGTTTTTATTGACGATATCTTGGTTTGCTTCAAGACAAAGGCCGAGCATGAGGAGCATTTGCATCAAGTTTTAGGGACTCTCCGAACTAATAAGTTGTATGCCAAGTATTCCAAGTGTGAGTTCTGCCTGAAGAAGGTATCCTTTCTTAGACATGTAGTGTCCAGTGAGGGAGTTTCTGTAGACTCAACAAAGATTGAGGCTGTTACTAGTTGGCCTCAACCGTCTACAGTCAGTGAGGTTCGTAGTTTTCTGGATCTAGCAGGTTATTACAGAAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGATTCAGTTGACCTGGAAAGGCACTCCCTTTGTTTGGAGCCCAGCATGTGAGAGTAGTTTCCAGGAGCTTAAGAAGAAGCTTGTATCTGCACTAGTTCTTACAGTGCCAAATGGATCTAGAAGTTTCGTGATCTACAGTGATGCCTCAAAGAAAGGATTGGGTTGTGTCTTAATGTAG

Protein sequence

MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCLKKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASPLIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM

Homology

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BLAST of Pay0003073 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 58/176 (32.95%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 4   MNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCLKKV 63
           MN + +   +   +V++DDI+V   +  EH + L  V   L    L  +  KCEF  ++ 
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 64  SFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASPLIQ 123
           +FL HV++ +G+  +  KIEA+  +P P+   E+++FL L GYYR+F+ +F+ IA P+ +
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 124 LTWKGTPF-VWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVL 179
              K       +P  +S+F++LK  +    +L VP+ ++ F + +DAS   LG VL
Sbjct: 469 CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVL 524

[Close]

BLAST of Pay0003073 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.4e-23
Identity = 55/176 (31.25%), Postives = 97/176 (55.11%), Query Frame = 0


Query: 4   MNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCLKKV 63
           MN + +   +   +V++DDI++   +  EH   +  V   L    L  +  KCEF  K+ 
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 64  SFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASPLIQ 123
           +FL H+V+ +G+  +  K++A+ S+P P+   E+R+FL L GYYR+F+ +++ IA P+  
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 124 LTWKGTPF-VWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVL 179
              K T           +F++LK  ++   +L +P+  + FV+ +DAS   LG VL
Sbjct: 468 CLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVL 523

[Close]

BLAST of Pay0003073 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-22
Identity = 52/176 (29.55%), Postives = 93/176 (52.84%), Query Frame = 0


Query: 3   LMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCLKK 62
           +M   F     +   +++DD++V   ++    ++L +V G  R   L     KC F + +
Sbjct: 456 MMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHE 515

Query: 63  VSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASPLI 122
           V+FL H  + +G+  D  K + + ++P P      R F+    YYRRF+++F+  +  + 
Sbjct: 516 VTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHIT 575

Query: 123 QLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVL 179
           +L  K  PF W+  C+ +F  LK +L++  +L  P+ S+ F I +DASK+  G VL
Sbjct: 576 RLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVL 631

[Close]

BLAST of Pay0003073 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-21
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 0


Query: 4   MNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCLKKV 63
           +N +  +  ++ V+ ++DDIL+  K+++EH +H+  VL  L+   L    +KCEF   +V
Sbjct: 549 INTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608

Query: 64  SFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASPLIQ 123
            F+ + +S +G +     I+ V  W QP    E+R FL    Y R+F+   S++  PL  
Sbjct: 609 KFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNN 668

Query: 124 LTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVL 179
           L  K   + W+P    + + +K+ LVS  VL   + S+  ++ +DAS   +G VL
Sbjct: 669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVL 723

[Close]

BLAST of Pay0003073 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-21
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 0


Query: 4   MNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCLKKV 63
           +N +  +  ++ V+ ++DDIL+  K+++EH +H+  VL  L+   L    +KCEF   +V
Sbjct: 549 INTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608

Query: 64  SFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASPLIQ 123
            F+ + +S +G +     I+ V  W QP    E+R FL    Y R+F+   S++  PL  
Sbjct: 609 KFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNN 668

Query: 124 LTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVL 179
           L  K   + W+P    + + +K+ LVS  VL   + S+  ++ +DAS   +G VL
Sbjct: 669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVL 723

[Close]

BLAST of Pay0003073 vs. ExPASy TrEMBL
Match: A0A1S4DXL7 (uncharacterized mitochondrial protein AtMg00860-like OS=Cucumis melo OX=3656 GN=LOC107990914 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.9e-92
Identity = 174/179 (97.21%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDF DAFVIVFIDDILVC KTKAEHEEHLHQVLGTLRTNKLYA YSKCEFCL
Sbjct: 1   MDLMNRVFKDFLDAFVIVFIDDILVCSKTKAEHEEHLHQVLGTLRTNKLYAMYSKCEFCL 60

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP
Sbjct: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 180
           LIQLT KGTPFVWSP CESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM
Sbjct: 121 LIQLTCKGTPFVWSPTCESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 179

[Close]

BLAST of Pay0003073 vs. ExPASy TrEMBL
Match: A0A5A7TDZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold460G00060 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.5e-87
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL
Sbjct: 180 MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 239

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP
Sbjct: 240 KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 299

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFV 165
           LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSF+
Sbjct: 300 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFL 343

[Close]

BLAST of Pay0003073 vs. ExPASy TrEMBL
Match: A0A5D3DJJ1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004660 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.5e-87
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL
Sbjct: 180 MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 239

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP
Sbjct: 240 KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 299

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFV 165
           LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSF+
Sbjct: 300 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFL 343

[Close]

BLAST of Pay0003073 vs. ExPASy TrEMBL
Match: A0A5D3BZN1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00670 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.9e-80
Identity = 153/179 (85.47%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDF D+FVIVFIDDIL+  KT+AEHEEHLHQVL TLR NKLYAK+SKCEF L
Sbjct: 768 MDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL 827

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           +KV+FL HVVSSEGVSVD TKIEAVT+WP+PSTVSE+RSFL LAGYYRRFVEDFSRIASP
Sbjct: 828 RKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASP 887

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 180
           L QLT KGTPFVWSPACESSFQELK+KLV+A VLTVP+GS +FVIYSDASKKGLGCVLM
Sbjct: 888 LTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLM 946

[Close]

BLAST of Pay0003073 vs. ExPASy TrEMBL
Match: A0A5A7TAT0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00960 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 152/179 (84.92%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDF D+FVIVFIDDIL+  KT+AEHEEHLHQVL TLR NKLYAK+SKCEF L
Sbjct: 495 MDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL 554

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           +KV+FL HVVSSEGVSVD  KIEAVT+WP+PSTVSE+RSFL LAGYYRRFVEDFSRIASP
Sbjct: 555 RKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASP 614

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 180
           L QLT KGTPFVWSPACESSFQELK+KLV+A VLT+P+GSR+FVIYSDASKKGLGCVLM
Sbjct: 615 LTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTLPDGSRNFVIYSDASKKGLGCVLM 673

[Close]

BLAST of Pay0003073 vs. NCBI nr
Match: XP_016900460.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00860-like [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 174/179 (97.21%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDF DAFVIVFIDDILVC KTKAEHEEHLHQVLGTLRTNKLYA YSKCEFCL
Sbjct: 1   MDLMNRVFKDFLDAFVIVFIDDILVCSKTKAEHEEHLHQVLGTLRTNKLYAMYSKCEFCL 60

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP
Sbjct: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 180
           LIQLT KGTPFVWSP CESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM
Sbjct: 121 LIQLTCKGTPFVWSPTCESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 179

[Close]

BLAST of Pay0003073 vs. NCBI nr
Match: TYK23399.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL
Sbjct: 180 MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 239

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP
Sbjct: 240 KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 299

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFV 165
           LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSF+
Sbjct: 300 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFL 343

[Close]

BLAST of Pay0003073 vs. NCBI nr
Match: KAA0040306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL
Sbjct: 180 MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 239

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP
Sbjct: 240 KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 299

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFV 165
           LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSF+
Sbjct: 300 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFL 343

[Close]

BLAST of Pay0003073 vs. NCBI nr
Match: TYK05193.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 153/179 (85.47%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDF D+FVIVFIDDIL+  KT+AEHEEHLHQVL TLR NKLYAK+SKCEF L
Sbjct: 768 MDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL 827

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           +KV+FL HVVSSEGVSVD TKIEAVT+WP+PSTVSE+RSFL LAGYYRRFVEDFSRIASP
Sbjct: 828 RKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASP 887

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 180
           L QLT KGTPFVWSPACESSFQELK+KLV+A VLTVP+GS +FVIYSDASKKGLGCVLM
Sbjct: 888 LTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLM 946

[Close]

BLAST of Pay0003073 vs. NCBI nr
Match: KAA0040542.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 2.4e-79
Identity = 152/179 (84.92%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MDLMNRVFKDFSDAFVIVFIDDILVCFKTKAEHEEHLHQVLGTLRTNKLYAKYSKCEFCL 60
           MDLMNRVFKDF D+FVIVFIDDIL+  KT+AEHEEHLHQVL TLR NKLYAK+SKCEF L
Sbjct: 495 MDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL 554

Query: 61  KKVSFLRHVVSSEGVSVDSTKIEAVTSWPQPSTVSEVRSFLDLAGYYRRFVEDFSRIASP 120
           +KV+FL HVVSSEGVSVD  KIEAVT+WP+PSTVSE+RSFL LAGYYRRFVEDFSRIASP
Sbjct: 555 RKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASP 614

Query: 121 LIQLTWKGTPFVWSPACESSFQELKKKLVSALVLTVPNGSRSFVIYSDASKKGLGCVLM 180
           L QLT KGTPFVWSPACESSFQELK+KLV+A VLT+P+GSR+FVIYSDASKKGLGCVLM
Sbjct: 615 LTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTLPDGSRNFVIYSDASKKGLGCVLM 673

[Close]

BLAST of Pay0003073 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-21
Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 36  HLHQVLGTLRTNKLYAKYSKCEFCLKKVSFL--RHVVSSEGVSVDSTKIEAVTSWPQPST 95
           HL  VL     ++ YA   KC F   ++++L  RH++S EGVS D  K+EA+  WP+P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 96  VSEVRSFLDLAGYYRRFVEDFSRIASPLIQLTWKGTPFVWSPACESSFQELKKKLVSALV 155
            +E+R FL L GYYRRFV+++ +I  PL +L  K +   W+     +F+ LK  + +  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 156 LTVPNGSRSFV 165
           L +P+    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Pay0003073 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.5e-23	32.95	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	7.4e-23	31.25	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10394	2.1e-22	29.55	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P0CT41	2.4e-21	30.86	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.4e-21	30.86	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Pay0003073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXL7	5.9e-92	97.21	uncharacterized mitochondrial protein AtMg00860-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7TDZ4	7.5e-87	99.39	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold460G00060 PE...	[more]
A0A5D3DJJ1	7.5e-87	99.39	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004660 P...	[more]
A0A5D3BZN1	8.9e-80	85.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5A7TAT0	1.2e-79	84.92	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Pay0003073 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900460.1	1.2e-91	97.21	PREDICTED: uncharacterized mitochondrial protein AtMg00860-like [Cucumis melo]	[more]
TYK23399.1	1.5e-86	99.39	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040306.1	1.5e-86	99.39	pol protein [Cucumis melo var. makuwa]	[more]
TYK05193.1	1.8e-79	85.47	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040542.1	2.4e-79	84.92	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0003073 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.1e-21	38.17	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 133..179 e-value: 1.1E-11 score: 44.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..76 e-value: 1.2E-23 score: 85.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 79..170 e-value: 4.1E-29 score: 102.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..66 e-value: 7.7E-9 score: 35.4
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 10..158
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 10..158
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003073.1	Pay0003073.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding