Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGGTGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGGAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGAGATCGAACTTGTATATGAAATTAATTAAGGATTATCGTCATCTTTTCCTTTTGCAAATAGATGAATAAAAGCTATAGATGATGAAT
mRNA sequence
ATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGGTGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGGAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGAGATCGAACTTGTATATGAAATTAATTAAGGATTATCGTCATCTTTTCCTTTTGCAAATAGATGAATAAAAGCTATAGATGATGAAT
Coding sequence (CDS)
ATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGGTGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGGAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGA
Protein sequence
MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGYGEGHGYGEGHGYGNGGEN
Homology
BLAST of Pay0001977 vs. ExPASy TrEMBL
Match:
A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 3.3e-50
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL GSGSGFGSGP
Sbjct: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60
Query: 61 GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120
GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY
Sbjct: 61 GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120
Query: 121 GEGHGYGEGHGYGNGGEN 139
GEGHGYGEGHGYGNGGEN
Sbjct: 121 GEGHGYGEGHGYGNGGEN 138
BLAST of Pay0001977 vs. ExPASy TrEMBL
Match:
A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 6.9e-32
Identity = 114/151 (75.50%), Postives = 122/151 (80.79%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSGS 60
MASIR V+++ LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLG GSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
G GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSY AGSGSGRNRNGGSGSGSG+G
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----AGSGSGRNRNGGSGSGSGSG 120
Query: 121 NG-------GEGYGEGHGYGEGHGYGNGGEN 139
+G G G G G GYGEGHGYGN GEN
Sbjct: 121 SGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of Pay0001977 vs. ExPASy TrEMBL
Match:
A0A1S3B9N0 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1)
HSP 1 Score: 137.9 bits (346), Expect = 3.2e-29
Identity = 108/151 (71.52%), Postives = 119/151 (78.81%), Query Frame = 0
Query: 1 MASIRGVA-VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSG 60
MASI+ +A VV LL SV +SE RVARKDLG+DLGG+G+G+G G+GLG+G GSG
Sbjct: 1 MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60
Query: 61 SGFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGT 120
SG GSG GSSS+SSS+SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NRNGGSG GSG
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120
Query: 121 GNG---------GEGYGEGHGYGEGHGYGNG 136
G G GEGYGEGHGYGEGHGYG G
Sbjct: 121 GGGSGRGGSNGNGEGYGEGHGYGEGHGYGGG 151
BLAST of Pay0001977 vs. ExPASy TrEMBL
Match:
A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29
Identity = 109/152 (71.71%), Postives = 119/152 (78.29%), Query Frame = 0
Query: 1 MASIRGVA-VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSG 60
MASI+ +A VV LL S I+SE RVARKDLG+DLGGVG+G+GTG+GLG+G GSG
Sbjct: 1 MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60
Query: 61 SGFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGT 120
SG GSG GSSS+SSS+SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NRNGGSG GSG
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120
Query: 121 GNG----------GEGYGEGHGYGEGHGYGNG 136
G G GEGYGEGHGYGEG GYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152
BLAST of Pay0001977 vs. ExPASy TrEMBL
Match:
A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29
Identity = 107/144 (74.31%), Postives = 120/144 (83.33%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVS-VIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG-----GSGS 60
MA+IR AVV F+LG+S IVSE+RVARKDLG+DLGGVG+G+G G+GLG G G+G+
Sbjct: 1 MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60
Query: 61 GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
G GSG GSSS+SSS+SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NR GSGSG G G
Sbjct: 61 GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGG 120
Query: 121 NG---GEGYGEGHGYGEGHGYGNG 136
+G GEGYGEGHGYGEGHGYG G
Sbjct: 121 SGRGSGEGYGEGHGYGEGHGYGGG 144
BLAST of Pay0001977 vs. NCBI nr
Match:
XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])
HSP 1 Score: 207.6 bits (527), Expect = 6.8e-50
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL GSGSGFGSGP
Sbjct: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60
Query: 61 GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120
GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY
Sbjct: 61 GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120
Query: 121 GEGHGYGEGHGYGNGGEN 139
GEGHGYGEGHGYGNGGEN
Sbjct: 121 GEGHGYGEGHGYGNGGEN 138
BLAST of Pay0001977 vs. NCBI nr
Match:
XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])
HSP 1 Score: 174.1 bits (440), Expect = 8.4e-40
Identity = 126/151 (83.44%), Postives = 130/151 (86.09%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSGS 60
MASIR V ++ FLLGVSVIVSE RVAR +LGLDLGGVGLGVGTGVGLGLG GSGS
Sbjct: 1 MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
Query: 61 GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
G GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSG+G
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
Query: 121 NG-------GEGYGEGHGYGEGHGYGNGGEN 139
G GEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 YGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151
BLAST of Pay0001977 vs. NCBI nr
Match:
XP_023515818.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 147.9 bits (372), Expect = 6.4e-32
Identity = 116/164 (70.73%), Postives = 123/164 (75.00%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
MASIR V+++ LL +SVIVSESR+AR DLGLDLGGVG+G+GTGVGLGLGGSGS GSG
Sbjct: 1 MASIRAVSILALLLALSVIVSESRIARMDLGLDLGGVGVGIGTGVGLGLGGSGS--GSGS 60
Query: 61 GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSG--------------------SG 120
GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSG SG
Sbjct: 61 GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSASG 120
Query: 121 RNRNGGSGSGSGTG---------NGGEGYGEGHGYGEGHGYGNG 136
RNRNGGSGSGSG G GGEGYGEGHGYGEG GYG G
Sbjct: 121 RNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 162
BLAST of Pay0001977 vs. NCBI nr
Match:
XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 114/151 (75.50%), Postives = 122/151 (80.79%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSGS 60
MASIR V+++ LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLG GSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
G GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSY AGSGSGRNRNGGSGSGSG+G
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----AGSGSGRNRNGGSGSGSGSG 120
Query: 121 NG-------GEGYGEGHGYGEGHGYGNGGEN 139
+G G G G G GYGEGHGYGN GEN
Sbjct: 121 SGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of Pay0001977 vs. NCBI nr
Match:
KAG6589745.1 (hypothetical protein SDJN03_15168, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 139.0 bits (349), Expect = 3.0e-29
Identity = 112/164 (68.29%), Postives = 121/164 (73.78%), Query Frame = 0
Query: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
MASI + VV FLL SVIVS++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSG GSG
Sbjct: 1 MASINSLIVVCFLLSFSVIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 G----SSSASSSHSSSSSSGSDAGSEAGSY----------------AGSYAGSRAGSGSG 120
G SSS+SSS+SSSS SGS AGSEAGSY AGSYAGSRAGSGSG
Sbjct: 61 GSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSGSG 120
Query: 121 RNRNGGSGSGSGTG---------NGGEGYGEGHGYGEGHGYGNG 136
RNRNGGSGSGSG G GGEGYGEGHGYGEG GYG G
Sbjct: 121 RNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 164
BLAST of Pay0001977 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 98.6 bits (244), Expect = 4.2e-21
Identity = 90/145 (62.07%), Postives = 102/145 (70.34%), Query Frame = 0
Query: 9 VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGPG------S 68
++T +L SV+VSESRVARKDLGLDLGG+G G+G G+G+G GGSGSG G+G G S
Sbjct: 12 LITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGSS 71
Query: 69 SSASSSHSSSSSS---GSDAGSEAGSYAGSYAGS----RAGSGSGRNRNGGSGSGSGTG- 128
SS+SSS SSSSSS G DAGSEAGSYAGS+AGS R+GSG GR GG G G G G
Sbjct: 72 SSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGGGG 131
Query: 129 ----NGGEGYGEGHGYGEGHGYGNG 136
GG G G G GYGEG GYG G
Sbjct: 132 GGGRGGGGGSGNGEGYGEGGGYGGG 156
BLAST of Pay0001977 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 79.7 bits (195), Expect = 2.0e-15
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 0
Query: 12 FLLGVSVI-----VSESRVARKDLGLDLGGVGLGVGTGVGLGLG-----GSGSGFGSGPG 71
FLLG+ VI ++ESR+ARKDLG+DLGG+G+G+G G+G+GLG G+G+G GSG G
Sbjct: 8 FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67
Query: 72 SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSG 101
S S+SSS SSSSSS S +G AGS AGS+AGSRAGSGSG
Sbjct: 68 SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3B8Y8 | 3.3e-50 | 98.55 | putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... | [more] |
A0A6J1E1T0 | 6.9e-32 | 75.50 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
A0A1S3B9N0 | 3.2e-29 | 71.52 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
A0A0A0LTK9 | 4.2e-29 | 71.71 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1 | [more] |
A0A6J1C497 | 4.2e-29 | 74.31 | putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... | [more] |
Match Name | E-value | Identity | Description | |
XP_008443812.1 | 6.8e-50 | 98.55 | PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo] | [more] |
XP_038879815.1 | 8.4e-40 | 83.44 | putative per-hexamer repeat protein 5 [Benincasa hispida] | [more] |
XP_023515818.1 | 6.4e-32 | 70.73 | putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo ... | [more] |
XP_022921884.1 | 1.4e-31 | 75.50 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... | [more] |
KAG6589745.1 | 3.0e-29 | 68.29 | hypothetical protein SDJN03_15168, partial [Cucurbita argyrosperma subsp. sorori... | [more] |