Pay0001977 (gene) Melon (Payzawat) v1

Overview
NamePay0001977
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr02: 12911115 .. 12911617 (+)
RNA-Seq ExpressionPay0001977
SyntenyPay0001977
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGGTGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGGAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGAGATCGAACTTGTATATGAAATTAATTAAGGATTATCGTCATCTTTTCCTTTTGCAAATAGATGAATAAAAGCTATAGATGATGAAT

mRNA sequence

ATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGGTGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGGAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGAGATCGAACTTGTATATGAAATTAATTAAGGATTATCGTCATCTTTTCCTTTTGCAAATAGATGAATAAAAGCTATAGATGATGAAT

Coding sequence (CDS)

ATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGGTGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGGAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGA

Protein sequence

MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGYGEGHGYGEGHGYGNGGEN
Homology
BLAST of Pay0001977 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.3e-50
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
           MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL GSGSGFGSGP
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60

Query: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120
           GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY
Sbjct: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120

Query: 121 GEGHGYGEGHGYGNGGEN 139
           GEGHGYGEGHGYGNGGEN
Sbjct: 121 GEGHGYGEGHGYGNGGEN 138

BLAST of Pay0001977 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.9e-32
Identity = 114/151 (75.50%), Postives = 122/151 (80.79%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSGS 60
           MASIR V+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLG      GSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
           G GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSY    AGSGSGRNRNGGSGSGSG+G
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----AGSGSGRNRNGGSGSGSGSG 120

Query: 121 NG-------GEGYGEGHGYGEGHGYGNGGEN 139
           +G       G G G G GYGEGHGYGN GEN
Sbjct: 121 SGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN 147

BLAST of Pay0001977 vs. ExPASy TrEMBL
Match: A0A1S3B9N0 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.2e-29
Identity = 108/151 (71.52%), Postives = 119/151 (78.81%), Query Frame = 0

Query: 1   MASIRGVA-VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSG 60
           MASI+ +A VV  LL  SV +SE RVARKDLG+DLGG+G+G+G G+GLG+G      GSG
Sbjct: 1   MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60

Query: 61  SGFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGT 120
           SG GSG GSSS+SSS+SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NRNGGSG GSG 
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GNG---------GEGYGEGHGYGEGHGYGNG 136
           G G         GEGYGEGHGYGEGHGYG G
Sbjct: 121 GGGSGRGGSNGNGEGYGEGHGYGEGHGYGGG 151

BLAST of Pay0001977 vs. ExPASy TrEMBL
Match: A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29
Identity = 109/152 (71.71%), Postives = 119/152 (78.29%), Query Frame = 0

Query: 1   MASIRGVA-VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSG 60
           MASI+ +A VV  LL  S I+SE RVARKDLG+DLGGVG+G+GTG+GLG+G      GSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGT 120
           SG GSG GSSS+SSS+SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NRNGGSG GSG 
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GNG----------GEGYGEGHGYGEGHGYGNG 136
           G G          GEGYGEGHGYGEG GYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152

BLAST of Pay0001977 vs. ExPASy TrEMBL
Match: A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29
Identity = 107/144 (74.31%), Postives = 120/144 (83.33%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVS-VIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG-----GSGS 60
           MA+IR  AVV F+LG+S  IVSE+RVARKDLG+DLGGVG+G+G G+GLG G     G+G+
Sbjct: 1   MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60

Query: 61  GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
           G GSG GSSS+SSS+SSSSSSGS AGSEAGSYAGSYAGSRAGSGSG NR  GSGSG G G
Sbjct: 61  GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGG 120

Query: 121 NG---GEGYGEGHGYGEGHGYGNG 136
           +G   GEGYGEGHGYGEGHGYG G
Sbjct: 121 SGRGSGEGYGEGHGYGEGHGYGGG 144

BLAST of Pay0001977 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 6.8e-50
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
           MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL GSGSGFGSGP
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60

Query: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120
           GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY
Sbjct: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120

Query: 121 GEGHGYGEGHGYGNGGEN 139
           GEGHGYGEGHGYGNGGEN
Sbjct: 121 GEGHGYGEGHGYGNGGEN 138

BLAST of Pay0001977 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-40
Identity = 126/151 (83.44%), Postives = 130/151 (86.09%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSGS 60
           MASIR V ++ FLLGVSVIVSE RVAR +LGLDLGGVGLGVGTGVGLGLG      GSGS
Sbjct: 1   MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60

Query: 61  GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
           G GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSG+G
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120

Query: 121 NG-------GEGYGEGHGYGEGHGYGNGGEN 139
            G       GEGYGEGHGYGEGHGYGNGGEN
Sbjct: 121 YGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151

BLAST of Pay0001977 vs. NCBI nr
Match: XP_023515818.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 6.4e-32
Identity = 116/164 (70.73%), Postives = 123/164 (75.00%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
           MASIR V+++  LL +SVIVSESR+AR DLGLDLGGVG+G+GTGVGLGLGGSGS  GSG 
Sbjct: 1   MASIRAVSILALLLALSVIVSESRIARMDLGLDLGGVGVGIGTGVGLGLGGSGS--GSGS 60

Query: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSG--------------------SG 120
           GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSG                    SG
Sbjct: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSASG 120

Query: 121 RNRNGGSGSGSGTG---------NGGEGYGEGHGYGEGHGYGNG 136
           RNRNGGSGSGSG G          GGEGYGEGHGYGEG GYG G
Sbjct: 121 RNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 162

BLAST of Pay0001977 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 114/151 (75.50%), Postives = 122/151 (80.79%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLG------GSGS 60
           MASIR V+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLG      GSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
           G GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSY    AGSGSGRNRNGGSGSGSG+G
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----AGSGSGRNRNGGSGSGSGSG 120

Query: 121 NG-------GEGYGEGHGYGEGHGYGNGGEN 139
           +G       G G G G GYGEGHGYGN GEN
Sbjct: 121 SGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN 147

BLAST of Pay0001977 vs. NCBI nr
Match: KAG6589745.1 (hypothetical protein SDJN03_15168, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-29
Identity = 112/164 (68.29%), Postives = 121/164 (73.78%), Query Frame = 0

Query: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGP 60
           MASI  + VV FLL  SVIVS++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSG GSG 
Sbjct: 1   MASINSLIVVCFLLSFSVIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  G----SSSASSSHSSSSSSGSDAGSEAGSY----------------AGSYAGSRAGSGSG 120
           G    SSS+SSS+SSSS SGS AGSEAGSY                AGSYAGSRAGSGSG
Sbjct: 61  GSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSGSG 120

Query: 121 RNRNGGSGSGSGTG---------NGGEGYGEGHGYGEGHGYGNG 136
           RNRNGGSGSGSG G          GGEGYGEGHGYGEG GYG G
Sbjct: 121 RNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 164

BLAST of Pay0001977 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.2e-21
Identity = 90/145 (62.07%), Postives = 102/145 (70.34%), Query Frame = 0

Query: 9   VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGFGSGPG------S 68
           ++T +L  SV+VSESRVARKDLGLDLGG+G G+G G+G+G GGSGSG G+G G      S
Sbjct: 12  LITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGSS 71

Query: 69  SSASSSHSSSSSS---GSDAGSEAGSYAGSYAGS----RAGSGSGRNRNGGSGSGSGTG- 128
           SS+SSS SSSSSS   G DAGSEAGSYAGS+AGS    R+GSG GR   GG G G G G 
Sbjct: 72  SSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGGGG 131

Query: 129 ----NGGEGYGEGHGYGEGHGYGNG 136
                GG G G G GYGEG GYG G
Sbjct: 132 GGGRGGGGGSGNGEGYGEGGGYGGG 156

BLAST of Pay0001977 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-15
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 0

Query: 12  FLLGVSVI-----VSESRVARKDLGLDLGGVGLGVGTGVGLGLG-----GSGSGFGSGPG 71
           FLLG+ VI     ++ESR+ARKDLG+DLGG+G+G+G G+G+GLG     G+G+G GSG G
Sbjct: 8   FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67

Query: 72  SSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSG 101
           S S+SSS SSSSSS S +G  AGS AGS+AGSRAGSGSG
Sbjct: 68  SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B8Y83.3e-5098.55putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1E1T06.9e-3275.50glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A1S3B9N03.2e-2971.52glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0LTK94.2e-2971.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1[more]
A0A6J1C4974.2e-2974.31putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... [more]
Match NameE-valueIdentityDescription
XP_008443812.16.8e-5098.55PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
XP_038879815.18.4e-4083.44putative per-hexamer repeat protein 5 [Benincasa hispida][more]
XP_023515818.16.4e-3270.73putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo ... [more]
XP_022921884.11.4e-3175.50glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... [more]
KAG6589745.13.0e-2968.29hypothetical protein SDJN03_15168, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT4G30460.14.2e-2162.07glycine-rich protein [more]
AT4G30450.12.0e-1563.64glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..82
NoneNo IPR availablePANTHERPTHR38934HYPHALLY REGULATED CELL WALL PROTEIN 1coord: 1..135
NoneNo IPR availablePANTHERPTHR38934:SF13GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATEDcoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0001977.1Pay0001977.1mRNA