Pay0000188 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000188
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	calsequestrin-1-like
Location	chr04: 9470124 .. 9470501 (-)
RNA-Seq Expression	Pay0000188
Synteny	Pay0000188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATTTTCATCTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGTATTGAAGACGAGGATGAAAATAATCCTCTCGATTGCAACACATCAGAGATGA

mRNA sequence

ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATTTTCATCTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGTATTGAAGACGAGGATGAAAATAATCCTCTCGATTGCAACACATCAGAGATGA

Coding sequence (CDS)

ATGGAAGATGAGGATGATGATCCTATCAGCTGCGGCCACATTGAAGATAAAAATTTTCATCTCGGTTGCGACCACATTGAAGATGAAGATGATGATCCTTTCGACTACGATCATATTGAAGACGAAAATGAAGATGATGATCCTCTTCGTTGCGATCGCATTAAAGATGAAGATGATAATCCTCTCCGCTGCTGCATTGAAGACGATGATGAAGATGATGATCCTCTGGATTGCGGTGCATTGAAGACAAAGATGAAAATGATGATCCTCTTGGTTGCGGCTATATTGAAGATGAAGATGAACATGATCCTCTCGGTTGCGGTCGTATTGAAGACGAGGATGAAAATAATCCTCTCGATTGCAACACATCAGAGATGA

Protein sequence

MEDEDDDPISCGHIEDKNFHLGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDNPLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVVLKTRMKIILSIATHQR

Homology

[Close]

BLAST of Pay0000188 vs. ExPASy TrEMBL
Match: A0A5D3BA49 (Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00130 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.8e-56
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNFHLGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
           MEDEDDDPISCGHIEDKN H GCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60

Query: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVVLKTRMKIILSI 120
           PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAV LKT+MKIILS 
Sbjct: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120

Query: 121 ATHQR 126
           A HQR
Sbjct: 121 AKHQR 125

[Close]

BLAST of Pay0000188 vs. ExPASy TrEMBL
Match: A0A1S4E042 (calsequestrin-1-like OS=Cucumis melo OX=3656 GN=LOC107991299 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.8e-56
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNFHLGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
           MEDEDDDPISCGHIEDKN H GCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60

Query: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVVLKTRMKIILSI 120
           PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAV LKT+MKIILS 
Sbjct: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120

Query: 121 ATHQR 126
           A HQR
Sbjct: 121 AKHQR 125

[Close]

BLAST of Pay0000188 vs. ExPASy TrEMBL
Match: A0A5D3DSX1 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00120 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 77/161 (47.83%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNFH--------------LGCDHIEDEDDDPFDYDHIED----- 60
           +E E+DDP+ CGHIED+N                L C+  +DEDDDP +  +IED     
Sbjct: 64  IEGENDDPLGCGHIEDENGDPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDED 123

Query: 61  ---------ENEDDDPLRCDRIKDEDDNPLRCC-IEDD---------DEDDDPLDCGALK 120
                    E+EDDDPL CD I+DED+N L C  I+DD         DEDDDP    ALK
Sbjct: 124 DDLISCVHIEDEDDDPLGCDHIEDEDNNSLDCSRIKDDDSIDYERIKDEDDDPSAVVALK 183

Query: 121 TKMKMMILLVAAILKMKMNMILSVAVVLKTRMKIILSIATH 124
            KMKMM+L VA  LKMKM MILS +VVLK     ILS  TH
Sbjct: 184 -KMKMMVLSVAIALKMKM-MILSTSVVLKKMKMKILSTVTH 222

[Close]

BLAST of Pay0000188 vs. ExPASy TrEMBL
Match: A0A5A7SX67 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001230 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 57/108 (52.78%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 3   DEDDDPISCGHIED--KNFHLGCDHIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
           +++DDP  CG+IED  K+  L    IEDED DDP  YD IEDENED DP  C  I+DED 
Sbjct: 10  EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 69

Query: 63  DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 94
           D+PL C             C   +DEDDDPL C  LK KM MMILL A
Sbjct: 70  DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 117

[Close]

BLAST of Pay0000188 vs. ExPASy TrEMBL
Match: A0A1S3CK92 (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 57/108 (52.78%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 3   DEDDDPISCGHIED--KNFHLGCDHIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
           +++DDP  CG+IED  K+  L    IEDED DDP  YD IEDENED DP  C  I+DED 
Sbjct: 97  EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 156

Query: 63  DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 94
           D+PL C             C   +DEDDDPL C  LK KM MMILL A
Sbjct: 157 DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 204

[Close]

BLAST of Pay0000188 vs. NCBI nr
Match: XP_016901598.1 (PREDICTED: calsequestrin-1-like [Cucumis melo] >KAA0063470.1 calsequestrin-1-like [Cucumis melo var. makuwa] >TYJ95756.1 calsequestrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 9.9e-56
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNFHLGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60
           MEDEDDDPISCGHIEDKN H GCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN
Sbjct: 1   MEDEDDDPISCGHIEDKNVHFGCDHIEDEDDDPFDYDHIEDENEDDDPLRCDRIKDEDDN 60

Query: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVVLKTRMKIILSI 120
           PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAV LKT+MKIILS 
Sbjct: 61  PLRCCIEDDDEDDDPLDCGALKTKMKMMILLVAAILKMKMNMILSVAVALKTKMKIILST 120

Query: 121 ATHQR 126
           A HQR
Sbjct: 121 AKHQR 125

[Close]

BLAST of Pay0000188 vs. NCBI nr
Match: KAA0047489.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-14
Identity = 77/161 (47.83%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 1   MEDEDDDPISCGHIEDKNFH--------------LGCDHIEDEDDDPFDYDHIED----- 60
           +E E+DDP+ CGHIED+N                L C+  +DEDDDP +  +IED     
Sbjct: 64  IEGENDDPLGCGHIEDENGDPLDCKCIKYEDDDPLDCECFKDEDDDPLNCRYIEDEDDED 123

Query: 61  ---------ENEDDDPLRCDRIKDEDDNPLRCC-IEDD---------DEDDDPLDCGALK 120
                    E+EDDDPL CD I+DED+N L C  I+DD         DEDDDP    ALK
Sbjct: 124 DDLISCVHIEDEDDDPLGCDHIEDEDNNSLDCSRIKDDDSIDYERIKDEDDDPSAVVALK 183

Query: 121 TKMKMMILLVAAILKMKMNMILSVAVVLKTRMKIILSIATH 124
            KMKMM+L VA  LKMKM MILS +VVLK     ILS  TH
Sbjct: 184 -KMKMMVLSVAIALKMKM-MILSTSVVLKKMKMKILSTVTH 222

[Close]

BLAST of Pay0000188 vs. NCBI nr
Match: XP_008463661.1 (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-11
Identity = 57/108 (52.78%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 3   DEDDDPISCGHIED--KNFHLGCDHIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
           +++DDP  CG+IED  K+  L    IEDED DDP  YD IEDENED DP  C  I+DED 
Sbjct: 97  EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 156

Query: 63  DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 94
           D+PL C             C   +DEDDDPL C  LK KM MMILL A
Sbjct: 157 DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 204

[Close]

BLAST of Pay0000188 vs. NCBI nr
Match: KAA0035630.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-11
Identity = 57/108 (52.78%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 3   DEDDDPISCGHIED--KNFHLGCDHIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED- 62
           +++DDP  CG+IED  K+  L    IEDED DDP  YD IEDENED DP  C  I+DED 
Sbjct: 10  EDEDDPFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDK 69

Query: 63  DNPLRC-------------CIEDDDEDDDPLDCGALKTKMKMMILLVA 94
           D+PL C             C   +DEDDDPL C  LK KM MMILL A
Sbjct: 70  DDPLDCGYIEDEDEDDPLDCNSIEDEDDDPLSCNTLKMKMMMMILLAA 117

[Close]

BLAST of Pay0000188 vs. NCBI nr
Match: KAA0041112.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 3   DEDDDPISCGHIEDKNFHLGCDHIEDED-DDPFDYDHIEDENEDDDPLRCDRIKDED--- 62
           +++DDP++C HI+D+N  LGC  IEDE+  DP   D I+D++E  DPL C +IKD+D   
Sbjct: 388 EDEDDPLNCSHIKDENDPLGCGRIEDENKHDPLGCDRIKDKDE-GDPLDCGQIKDKDDPL 447

Query: 63  ----DNPLRCCIEDDDEDDDPLDCGAL--------------------------KTKMKMM 122
               D+P  C   +D+E+ DPL C  +                          KTK KM+
Sbjct: 448 GEDEDDPFGCNRIEDEEEVDPLSCNRIEHKDDYDLLSVAVLKMKIIHLAAVISKTKTKMI 507

The following BLAST results are available for this feature:

BLAST of Pay0000188 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0000188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA49	4.8e-56	95.20	Calsequestrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110...	[more]
A0A1S4E042	4.8e-56	95.20	calsequestrin-1-like OS=Cucumis melo OX=3656 GN=LOC107991299 PE=4 SV=1	[more]
A0A5D3DSX1	2.7e-14	47.83	Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SX67	1.6e-11	52.78	Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CK92	1.6e-11	52.78	prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 ...	[more]

BLAST of Pay0000188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901598.1	9.9e-56	95.20	PREDICTED: calsequestrin-1-like [Cucumis melo] >KAA0063470.1 calsequestrin-1-lik...	[more]
KAA0047489.1	5.5e-14	47.83	prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK26455.1 p...	[more]
XP_008463661.1	3.3e-11	52.78	PREDICTED: prostatic spermine-binding protein-like [Cucumis melo]	[more]
KAA0035630.1	3.3e-11	52.78	prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 p...	[more]
KAA0041112.1	2.0e-08	38.31	prostatic spermine-binding protein-like [Cucumis melo var. makuwa]	[more]

BLAST of Pay0000188 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000188.1	Pay0000188.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane