PI0028803 (gene) Melon (PI 482460) v1

Overview


Name	PI0028803
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr08: 5504293 .. 5504778 (+)
RNA-Seq Expression	PI0028803
Synteny	PI0028803

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATGTCCTTCTTCCACTTCTCAAAATGCATCCCAGACTGTCAGGGATGCATATGATCGCTGGACAAAGGCCAATGACAAGGCTCGTGTCTACATCTTGGCTAGTATGTTTGACGTACTGATCAAGAAACATGAGACCATGGTAACTGCACGTCAGATCATGGACTCTCTCCGAGAGATGTTTGGACAACCGTCCACTCAGATCTGGCAAGAGTTAATTAAACACGTTTATGATGCCCATTTGAATGAGGACCAATCTGTTAGAGAACATGTTCTCGACATGATAGTCCATTTCAACGTAGCAGAAATGAACAGAGTGGTCTTTAATGAGAAGAGTCAAGTGTCCTTTATCTTGAAATCTCTTCCGAAGAGCTTTCTTCAATTCTGTAGCAATGCGGTTATGAACAAGATAGAGTACAATATGACTACCCTCTTTAATGAGTTGCAGATTTTTCAGTCTCTTATGAATAATGAAGGATAG

mRNA sequence

ATGGAGGAATGTCCTTCTTCCACTTCTCAAAATGCATCCCAGACTGTCAGGGATGCATATGATCGCTGGACAAAGGCCAATGACAAGGCTCGTGTCTACATCTTGGCTAGTATGTTTGACGTACTGATCAAGAAACATGAGACCATGGTAACTGCACGTCAGATCATGGACTCTCTCCGAGAGATGTTTGGACAACCGTCCACTCAGATCTGGCAAGAGTTAATTAAACACGTTTATGATGCCCATTTGAATGAGGACCAATCTGTTAGAGAACATGTTCTCGACATGATAGTCCATTTCAACGTAGCAGAAATGAACAGAGTGGTCTTTAATGAGAAGAGTCAAGTGTCCTTTATCTTGAAATCTCTTCCGAAGAGCTTTCTTCAATTCTGTAGCAATGCGGTTATGAACAAGATAGAGTACAATATGACTACCCTCTTTAATGAGTTGCAGATTTTTCAGTCTCTTATGAATAATGAAGGATAG

Coding sequence (CDS)

ATGGAGGAATGTCCTTCTTCCACTTCTCAAAATGCATCCCAGACTGTCAGGGATGCATATGATCGCTGGACAAAGGCCAATGACAAGGCTCGTGTCTACATCTTGGCTAGTATGTTTGACGTACTGATCAAGAAACATGAGACCATGGTAACTGCACGTCAGATCATGGACTCTCTCCGAGAGATGTTTGGACAACCGTCCACTCAGATCTGGCAAGAGTTAATTAAACACGTTTATGATGCCCATTTGAATGAGGACCAATCTGTTAGAGAACATGTTCTCGACATGATAGTCCATTTCAACGTAGCAGAAATGAACAGAGTGGTCTTTAATGAGAAGAGTCAAGTGTCCTTTATCTTGAAATCTCTTCCGAAGAGCTTTCTTCAATTCTGTAGCAATGCGGTTATGAACAAGATAGAGTACAATATGACTACCCTCTTTAATGAGTTGCAGATTTTTCAGTCTCTTATGAATAATGAAGGATAG

Protein sequence

MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSLMNNEG

Homology

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BLAST of PI0028803 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 119/156 (76.28%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLR
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+FNVAEMN+ +F+EKSQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Sbjct: 160 KSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTFQSL 195

[Close]

BLAST of PI0028803 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 119/156 (76.28%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLR
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+FNVAEMN+ +F+EKSQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Sbjct: 160 KSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTFQSL 195

[Close]

BLAST of PI0028803 vs. ExPASy TrEMBL
Match: A0A5D3DDU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00010 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57
Identity = 120/156 (76.92%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           M+ECP   +QNASQ+V+D YDRWTKANDKARVYILASM D+L KKHE MVTA QIMDSLR
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQ S QI Q+ IK+VY+AH+ E QSVR+HV+DMIVHFNVAEMN VVF+EKSQ+SFIL
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFIL 169

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSLPKSFLQF SNA MNKI YNMTT   EL  FQSL
Sbjct: 170 KSLPKSFLQFPSNAEMNKINYNMTTFLKELHTFQSL 205

[Close]

BLAST of PI0028803 vs. ExPASy TrEMBL
Match: A0A5A7UJZ3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00200 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.4e-53
Identity = 115/156 (73.72%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           ME+C     QNASQ+V+D YDRWTKANDKA +YILASM D+L KKHE MV ARQIMDS R
Sbjct: 13  MEDCLPFLIQNASQSVKDTYDRWTKANDKACIYILASMSDILSKKHEIMVIARQIMDSFR 72

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           E+FGQPS QI QE IK+VY+A + +DQSV+E+VLDMIV FNVAEMN VVF+EKSQVS+IL
Sbjct: 73  EIFGQPSIQIKQEAIKYVYNARMKKDQSVKENVLDMIVKFNVAEMNGVVFDEKSQVSYIL 132

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSL KSFLQF  N  MNKIEYNMTTL  ELQ FQSL
Sbjct: 133 KSLSKSFLQFRCNTEMNKIEYNMTTLLKELQTFQSL 168

[Close]

BLAST of PI0028803 vs. ExPASy TrEMBL
Match: A0A5D3CLL2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001530 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 110/150 (73.33%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           MEE P  ++QNAS++V DAYD WTK NDKAR+YILASM D+L KKHE MVT  QI+D LR
Sbjct: 1   MEEYPPFSTQNASRSVWDAYDHWTKTNDKARLYILASMSDILSKKHEIMVTTHQIIDFLR 60

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQPS QI QE IK++Y+AH+ E QS+REHVLDMI  FNVAEMN  VF+EKSQVS+IL
Sbjct: 61  EMFGQPSIQIIQETIKYIYNAHMKEGQSIREHVLDMIFKFNVAEMNGAVFDEKSQVSYIL 120

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNEL 151
           KSLPKSFLQF SNA +NKIEYNMTTL  EL
Sbjct: 121 KSLPKSFLQFRSNAKINKIEYNMTTLLKEL 150

[Close]

BLAST of PI0028803 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-57
Identity = 119/156 (76.28%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLR
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+FNVAEMN+ +F+EKSQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Sbjct: 160 KSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTFQSL 195

[Close]

BLAST of PI0028803 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-57
Identity = 119/156 (76.28%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLR
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+FNVAEMN+ +F+EKSQVS+IL
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYIL 159

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Sbjct: 160 KSLSKSFLQFCSNVKMNKIEYNMTTLLKELQTFQSL 195

[Close]

BLAST of PI0028803 vs. NCBI nr
Match: TYK21841.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 4.0e-57
Identity = 120/156 (76.92%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           M+ECP   +QNASQ+V+D YDRWTKANDKARVYILASM D+L KKHE MVTA QIMDSLR
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQ S QI Q+ IK+VY+AH+ E QSVR+HV+DMIVHFNVAEMN VVF+EKSQ+SFIL
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFIL 169

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSLPKSFLQF SNA MNKI YNMTT   EL  FQSL
Sbjct: 170 KSLPKSFLQFPSNAEMNKINYNMTTFLKELHTFQSL 205

[Close]

BLAST of PI0028803 vs. NCBI nr
Match: KAA0054556.1 (hypothetical protein E6C27_scaffold24G003420 [Cucumis melo var. makuwa] >TYK20395.1 hypothetical protein E5676_scaffold519G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-52
Identity = 115/156 (73.72%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           ME+C     QNASQ+V+D YDRWTKANDKA +YILASM D+L KKHE MV ARQIMDS R
Sbjct: 13  MEDCLPFLIQNASQSVKDTYDRWTKANDKACIYILASMSDILSKKHEIMVIARQIMDSFR 72

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           E+FGQPS QI QE IK+VY+A + +DQSV+E+VLDMIV FNVAEMN VVF+EKSQVS+IL
Sbjct: 73  EIFGQPSIQIKQEAIKYVYNARMKKDQSVKENVLDMIVKFNVAEMNGVVFDEKSQVSYIL 132

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL 157
           KSL KSFLQF  N  MNKIEYNMTTL  ELQ FQSL
Sbjct: 133 KSLSKSFLQFRCNTEMNKIEYNMTTLLKELQTFQSL 168

[Close]

BLAST of PI0028803 vs. NCBI nr
Match: KAA0049670.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK12202.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-51
Identity = 110/150 (73.33%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLR 60
           MEE P  ++QNAS++V DAYD WTK NDKAR+YILASM D+L KKHE MVT  QI+D LR
Sbjct: 1   MEEYPPFSTQNASRSVWDAYDHWTKTNDKARLYILASMSDILSKKHEIMVTTHQIIDFLR 60

Query: 61  EMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVFNEKSQVSFIL 120
           EMFGQPS QI QE IK++Y+AH+ E QS+REHVLDMI  FNVAEMN  VF+EKSQVS+IL
Sbjct: 61  EMFGQPSIQIIQETIKYIYNAHMKEGQSIREHVLDMIFKFNVAEMNGAVFDEKSQVSYIL 120

Query: 121 KSLPKSFLQFCSNAVMNKIEYNMTTLFNEL 151
           KSLPKSFLQF SNA +NKIEYNMTTL  EL
Sbjct: 121 KSLPKSFLQFRSNAKINKIEYNMTTLLKEL 150

The following BLAST results are available for this feature:

BLAST of PI0028803 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028803 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	1.1e-57	76.28	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	1.1e-57	76.28	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3DDU7	1.9e-57	76.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G000...	[more]
A0A5A7UJZ3	6.4e-53	73.72	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3CLL2	1.2e-51	73.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G0015...	[more]

BLAST of PI0028803 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	2.3e-57	76.28	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	2.3e-57	76.28	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK21841.1	4.0e-57	76.92	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054556.1	1.3e-52	73.72	hypothetical protein E6C27_scaffold24G003420 [Cucumis melo var. makuwa] >TYK2039...	[more]
KAA0049670.1	2.5e-51	73.33	gag/pol protein [Cucumis melo var. makuwa] >TYK12202.1 gag/pol protein [Cucumis ...	[more]

BLAST of PI0028803 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 23..152 e-value: 9.3E-16 score: 57.8
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 11..158
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 11..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028803.1	PI0028803.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding