PI0028423 (gene) Melon (PI 482460) v1

Overview
NamePI0028423
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionSWIM-type domain-containing protein
Locationchr11: 12932746 .. 12933351 (-)
RNA-Seq ExpressionPI0028423
SyntenyPI0028423
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTCATTTGACTTCTTGGGCTGAGAACGTTTTGCCTTTAGAACATGAAAAGTCAAAAAGTTTATTGGTAATTTTTTTTTATGTTTGTATCTTGGATAGATACAGATAGATATCTATCTATGTCTGTCTTAAATAGATACATATATATATCTATCTTTGTCTATCTGTGCCTATTTGTATATATTTTCTCATTTTTTAATTTTCCTTTATTTATTTTATTTATTAGGTCGATCCAATTAGTTTCACTAAATACAAAGTAATGGATGGAAATCAACAGTTCATTGTCAAGTTAAACTTGGGATCTTGTAGCTGTCGACTATGGGATGTTGAGGAAATTCCATGTTCACATGCACTTGTTGTTCTACGAATGCTTAATTTAGATACGTATTCTTATGTATTTGAGTTTTATTATAGAGAAACACTATCAGCAACATACAATGATTGTATTCAACCTGTTGGGACTCATTTGGATTGGAGAGTTGAAGATGATGTCATAAAAACATTACCTCCAATCTTTAAACGTCAAGCTGGAAGACCAAGAAAACAAAGAATTCCATTTGTAGGTGAATTTAATAGTTCATCAAGATGTTCCAAAGTTTGA

mRNA sequence

ATGAAGAGTCATTTGACTTCTTGGGCTGAGAACGTTTTGCCTTTAGAACATGAAAAGTCAAAAAGTTTATTGGTCGATCCAATTAGTTTCACTAAATACAAAGTAATGGATGGAAATCAACAGTTCATTGTCAAGTTAAACTTGGGATCTTGTAGCTGTCGACTATGGGATGTTGAGGAAATTCCATGTTCACATGCACTTGTTGTTCTACGAATGCTTAATTTAGATACGTATTCTTATGTATTTGAGTTTTATTATAGAGAAACACTATCAGCAACATACAATGATTGTATTCAACCTGTTGGGACTCATTTGGATTGGAGAGTTGAAGATGATGTCATAAAAACATTACCTCCAATCTTTAAACGTCAAGCTGGAAGACCAAGAAAACAAAGAATTCCATTTGTAGGTGAATTTAATAGTTCATCAAGATGTTCCAAAGTTTGA

Coding sequence (CDS)

ATGAAGAGTCATTTGACTTCTTGGGCTGAGAACGTTTTGCCTTTAGAACATGAAAAGTCAAAAAGTTTATTGGTCGATCCAATTAGTTTCACTAAATACAAAGTAATGGATGGAAATCAACAGTTCATTGTCAAGTTAAACTTGGGATCTTGTAGCTGTCGACTATGGGATGTTGAGGAAATTCCATGTTCACATGCACTTGTTGTTCTACGAATGCTTAATTTAGATACGTATTCTTATGTATTTGAGTTTTATTATAGAGAAACACTATCAGCAACATACAATGATTGTATTCAACCTGTTGGGACTCATTTGGATTGGAGAGTTGAAGATGATGTCATAAAAACATTACCTCCAATCTTTAAACGTCAAGCTGGAAGACCAAGAAAACAAAGAATTCCATTTGTAGGTGAATTTAATAGTTCATCAAGATGTTCCAAAGTTTGA

Protein sequence

MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSKV
Homology
BLAST of PI0028423 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.2e-51
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 25  VDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEF 84
           VDPIS T+Y+V +GNQQFIVKLN+  CSCR+WDVEEIPC+HALVVLRMLNLDTYSYV EF
Sbjct: 190 VDPISTTEYQVTNGNQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEF 249

Query: 85  YYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSR 144
           YYRETLS TYN CIQPVG+H DWRV D V+K LPP+FKRQAGRP KQRIP V EFNSS++
Sbjct: 250 YYRETLSETYNGCIQPVGSHFDWRVVDSVMKILPPVFKRQAGRPGKQRIPSVEEFNSSTK 309

Query: 145 CS 147
           CS
Sbjct: 310 CS 311

BLAST of PI0028423 vs. ExPASy TrEMBL
Match: A0A5A7V9D5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003560 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.1e-46
Identity = 91/115 (79.13%), Postives = 102/115 (88.70%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           MKSHLTSWAEN+L LE EKS+ LLVDPIS T+Y+V DGNQQFIVKLN+G CSCR+WD+EE
Sbjct: 149 MKSHLTSWAENILRLEDEKSRRLLVDPISTTEYQVTDGNQQFIVKLNVGCCSCRVWDIEE 208

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIK 116
           IPC+HAL VLRMLNLDTYSYV +FYYRETLSATYN C QPVG+H DWRV D V+K
Sbjct: 209 IPCAHALAVLRMLNLDTYSYVSKFYYRETLSATYNGC-QPVGSHFDWRVVDFVMK 262

BLAST of PI0028423 vs. ExPASy TrEMBL
Match: A0A5D3BVP4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00470 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.7e-40
Identity = 74/147 (50.34%), Postives = 110/147 (74.83%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           +KS L+SWAE ++    ++S+S +V+P+S  +++V+DG + F+VKLN  SCSC  WD+EE
Sbjct: 46  LKSVLSSWAEGLIRKLVDESRSFIVNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLEE 105

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPI 120
           IPC+HAL+V+R LNL+ Y++V ++YY   LSATY   ++P+G H DW V +     LPP+
Sbjct: 106 IPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYGGLVRPIGNHTDWSVVEVNDNILPPV 165

Query: 121 FKRQAGRPRKQRIPFVGEFNSSSRCSK 148
           F+R AGRPRK+RIP +GE + SS+CS+
Sbjct: 166 FRRPAGRPRKRRIPSIGEVSKSSKCSR 192

BLAST of PI0028423 vs. ExPASy TrEMBL
Match: A0A5D3BD68 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00090 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.3e-39
Identity = 74/147 (50.34%), Postives = 109/147 (74.15%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           +KS L+SWAE ++    ++S+S +V+P+S  +++V+DG + F+VKLN  SCSC  WD+EE
Sbjct: 445 LKSVLSSWAEGLIRKLVDESRSFIVNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLEE 504

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPI 120
           IPC+HAL+V+R LNL+ Y++V ++YY   LSATY   ++P+G H DW V       LPP+
Sbjct: 505 IPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYGGLVRPIGNHTDWSVVGVNDNILPPV 564

Query: 121 FKRQAGRPRKQRIPFVGEFNSSSRCSK 148
           F+R AGRPRK+RIP +GE + SS+CS+
Sbjct: 565 FRRPAGRPRKRRIPSIGEVSKSSKCSR 591

BLAST of PI0028423 vs. ExPASy TrEMBL
Match: A0A5D3BEQ2 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00400 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.1e-38
Identity = 71/147 (48.30%), Postives = 109/147 (74.15%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           +KS L+SWAE ++    ++S+S +V+P+S  +++V+DG + F+VKLN  SCSC  WD+EE
Sbjct: 46  LKSVLSSWAEGLIRKLVDESRSFIVNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLEE 105

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPI 120
           I C+HAL+V+R LNL+ Y++V ++YY   LSATY   ++P+G H DW V +     LPP+
Sbjct: 106 ISCAHALIVIRSLNLNPYAFVSQYYYTTVLSATYGGLVRPIGNHTDWSVVEVNDNILPPV 165

Query: 121 FKRQAGRPRKQRIPFVGEFNSSSRCSK 148
           F+R AGRPRK++IP +G+ + SS+CS+
Sbjct: 166 FRRPAGRPRKRKIPSIGKVSKSSKCSR 192

BLAST of PI0028423 vs. NCBI nr
Match: TYK07957.1 (hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 8.7e-51
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 25  VDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEF 84
           VDPIS T+Y+V +GNQQFIVKLN+  CSCR+WDVEEIPC+HALVVLRMLNLDTYSYV EF
Sbjct: 190 VDPISTTEYQVTNGNQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEF 249

Query: 85  YYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSR 144
           YYRETLS TYN CIQPVG+H DWRV D V+K LPP+FKRQAGRP KQRIP V EFNSS++
Sbjct: 250 YYRETLSETYNGCIQPVGSHFDWRVVDSVMKILPPVFKRQAGRPGKQRIPSVEEFNSSTK 309

Query: 145 CS 147
           CS
Sbjct: 310 CS 311

BLAST of PI0028423 vs. NCBI nr
Match: XP_038904248.1 (uncharacterized protein LOC120090597 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 2.2e-46
Identity = 91/148 (61.49%), Postives = 113/148 (76.35%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           M + LT WAEN+L  +HE+S+S +V PI   +Y VMDG++QF+VKLNLGSCSCR+WD EE
Sbjct: 189 MTTILTPWAENILCSQHEQSRSFMVHPIDNVQYSVMDGDKQFLVKLNLGSCSCRVWDFEE 248

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPI 120
           I CSHALV+L +LN+D YSYV  +YY  TLS TY  C++P+G H +WRV DD I+ LPPI
Sbjct: 249 ISCSHALVILELLNMDIYSYVSNYYYSSTLSWTYLGCVRPIGVHSNWRVLDDDIRALPPI 308

Query: 121 FKRQAGRPRKQRIPFVGEFNSSS-RCSK 148
           FKR AG P+KQRIP   E  SSS RCS+
Sbjct: 309 FKRSAGGPKKQRIPSKSEAKSSSLRCSR 336

BLAST of PI0028423 vs. NCBI nr
Match: KAA0062291.1 (hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK26695.1 hypothetical protein E5676_scaffold313G003560 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 6.4e-46
Identity = 91/115 (79.13%), Postives = 102/115 (88.70%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           MKSHLTSWAEN+L LE EKS+ LLVDPIS T+Y+V DGNQQFIVKLN+G CSCR+WD+EE
Sbjct: 149 MKSHLTSWAENILRLEDEKSRRLLVDPISTTEYQVTDGNQQFIVKLNVGCCSCRVWDIEE 208

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIK 116
           IPC+HAL VLRMLNLDTYSYV +FYYRETLSATYN C QPVG+H DWRV D V+K
Sbjct: 209 IPCAHALAVLRMLNLDTYSYVSKFYYRETLSATYNGC-QPVGSHFDWRVVDFVMK 262

BLAST of PI0028423 vs. NCBI nr
Match: XP_038896605.1 (uncharacterized protein LOC120084863 [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 5.4e-45
Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           M + LT WAEN+L  +HE+S+S ++ PI   +Y VMDG++QF+VKLN  SCS ++WD EE
Sbjct: 539 MTTILTPWAENILHNQHEQSRSFMIHPIEIVEYSVMDGDKQFLVKLNFESCSLQVWDFEE 598

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPI 120
           IPCSH LVVLR+LN+D YSY+  +YY   LS TY  C++PVG H +WRV DD I+ LPPI
Sbjct: 599 IPCSHVLVVLRLLNMDIYSYISNYYYSSALSWTYMGCVRPVGVHSNWRVLDDGIRALPPI 658

Query: 121 FKRQAGRPRKQRIPFVGEFNSSS-RCSK 148
           FK  A RP+KQRIP VGE  SSS RCS+
Sbjct: 659 FKHSARRPKKQRIPSVGEAKSSSLRCSR 686

BLAST of PI0028423 vs. NCBI nr
Match: XP_011654398.1 (uncharacterized protein LOC105435382 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-43
Identity = 87/147 (59.18%), Postives = 113/147 (76.87%), Query Frame = 0

Query: 1   MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEE 60
           MK+ LTSWAE++L  +HE+S+S  V PI+  +Y VM G++Q IVKLNLGSCSCR+WD  E
Sbjct: 78  MKTILTSWAESILRKQHEESRSFWVHPINNIEYNVMVGDKQLIVKLNLGSCSCRVWDFHE 137

Query: 61  IPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPI 120
           IPCSHALVVL MLNL++YSYV ++Y+ +TL +TY   + P+G H +WR+ +D I  LPPI
Sbjct: 138 IPCSHALVVLWMLNLNSYSYVSDYYHSQTLLSTYLGHVLPIGVHSNWRLVNDDIGALPPI 197

Query: 121 FKRQAGRPRKQRIPFVGEFNSSS-RCS 147
           FKR  GRP+  R+P +GE NSSS RCS
Sbjct: 198 FKRSVGRPKNLRVPSIGEVNSSSTRCS 224

BLAST of PI0028423 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-08
Identity = 32/111 (28.83%), Postives = 51/111 (45.95%), Query Frame = 0

Query: 18  EKSKSLLVDPISFT-------KYKVMDGN--QQFIVKLNLGSCSCRLWDVEEIPCSHALV 77
           +K +  + D I +         +KV + +  +++IV+LN+ +C+CR +   + PC HAL 
Sbjct: 601 DKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALA 660

Query: 78  VLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPP 120
           V   L ++   YV E Y  E    TY     PV     W  +  V    PP
Sbjct: 661 VFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAWPEDCRVPTLFPP 711

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C7L74.2e-5179.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V9D53.1e-4679.13SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BVP45.7e-4050.34SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BD681.3e-3950.34SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BEQ23.1e-3848.30SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
TYK07957.18.7e-5179.51hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa][more]
XP_038904248.12.2e-4661.49uncharacterized protein LOC120090597 [Benincasa hispida][more]
KAA0062291.16.4e-4679.13hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK2669... [more]
XP_038896605.15.4e-4559.46uncharacterized protein LOC120084863 [Benincasa hispida][more]
XP_011654398.15.1e-4359.18uncharacterized protein LOC105435382 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT1G64260.15.7e-0828.83MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 49..76
e-value: 1.6E-8
score: 44.3
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 40..74
e-value: 1.3E-7
score: 31.1
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 42..74
score: 10.58333
NoneNo IPR availablePANTHERPTHR31973POLYPROTEIN, PUTATIVE-RELATEDcoord: 4..147
NoneNo IPR availablePANTHERPTHR31973:SF141FAMILY TRANSPOSASE, PUTATIVE ISOFORM 1-RELATEDcoord: 4..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028423.1PI0028423.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding